BO02565.complete Sequence
1525 bp (1525 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629564
> BO02565.complete
GAAGTTATCAGTCGACATGGCTTCCAAATCTGCGTACGAAAAAACTTTGG
TAGTAAACATTGCCAATTTTGAAAAAATTCAGAACTTTTTAAATGACAAG
GAAAAGTACAAGGAGATTCTAGAAAACAGCGAGAATTTCAACACTCGTCT
ATGCATTGAACGTCGACTTCGCATGCCATTCCTCGATCCCCAGACAGGTG
TCGCACAGACACATTGCTCCCTCTTTATGAAAAAAAAACAGCGAATGCCA
GGTCTTCGACATGGTCAGATATACACTTATCCATCGTCTCGGTGGCGCAA
ACCAAAACGTCAGTACTTACTTAACCCGAATCAAAGTTTCCGAGCCTATC
AGTATCGCGAGCACAACCTTCAGCACTCCCACCATCAAACGCATCAGCAT
CACCATCATATACCTTCGTCTGGCGTTGCTGTACCACAAAATCCTCACTT
AGCTGAAAGCGCAGCCATTGCTGCTACGGATGGCAACTCCATGGGAGCAT
CAGGAGATAATGATAGTAAGGACTCACATGCAAACGTCGAAAAAGAATGG
TTCCACGATGAAATGGACACATCACATTTTCATCATGGCGATGAATTTGA
GGATGACTTTGATTCAGATAACGATTTTGATGAGTCTTACACCAGCCGGG
GCAAACGCAAAAAGTGTTCGCGTCCTAGACGAACAAATGCAAACGTAGAG
GGTACTCCCAAACGGGGACGTAAAGGTGGTGGCAATCGTCGAAAGAACGC
CGTTGAGGGAGAATCTGATCGAAAACGTAGAGCCGGTGGAAATAGTGCAA
ATACATCCGCAGCCGCAGCGGCAGCTGCCGCCGCTGTCGCACATGCAGCA
TGTACTGCAGCTGCTGTCGCTAGCACTGGGCTCTATGCATCTCATTCCAA
CTCAGCTTCGCCTATTCCCATAAATGACGACAATTCACAGTCAGGACTCA
TACTGCCAACAAACATATCGTCGTCGTACGATAAGACTTCAAGCGATGCT
GGAGCTTCCAATGACTCAATTCCCCTAGCAACAATGGTTGCCATAAACGC
GGGCCTGACAACCTCAAATGTTTGCAATGCGCATCCGGTGCAAACAGGAA
CAAATCAAACGGTGTTTGCTACTGGTAATAAGGTCAAACAACGTGTAGAA
CGTGACATAGCGCAACCATCACCTTATTGTGACTTTTGTCTGGGAGATCA
ACGAGAAAATAAAAAAACCAATATGCCCGAAGAGCTAGTATCGTGCTCGG
ACTGTGGTCGTTCCGGTCATCCATCGTGTCTGCAGTTCACGGCAAATATG
ATTATATCGGTAAAACGTTATCGTTGGCAATGCATTGAATGCAAGTACTG
CTCCATCTGTGGGACCTCTGATAATGACGATCAACTTTTATTTTGTGACG
ATTGTGACCGGGGATACCATATGTACTGCCTGTCACCACCGCTTGTGACT
CCACCAGAGGGTTCTTGGAGCTGCAAGCTATGCATGGAGGAGTTCCACAA
GATTAAAGCAAGCTTTCTAGACCAT
BO02565.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:32:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| d4-RA | 1494 | CG2682-PA | 1..1491 | 17..1507 | 7455 | 100 | Plus |
| d4-RD | 1491 | CG2682-PD | 1..1488 | 17..1507 | 7375 | 99.8 | Plus |
| d4-RC | 1488 | CG2682-PC | 1..1485 | 17..1507 | 7330 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:32:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| d4-RA | 1767 | CG2682-RA | 201..1693 | 15..1507 | 7465 | 100 | Plus |
| d4-RD | 1764 | CG2682-RD | 201..1690 | 15..1507 | 7385 | 99.8 | Plus |
| d4-RC | 1761 | CG2682-RC | 201..1687 | 15..1507 | 7340 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:32:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5295115..5295891 | 731..1507 | 3885 | 100 | Plus |
| 2R | 25286936 | 2R | 5294263..5294712 | 15..464 | 2250 | 100 | Plus |
| 2R | 25286936 | 2R | 5294794..5295064 | 462..732 | 1355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:32:27 has no hits.
BO02565.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:03 Download gff for
BO02565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| d4-RA | 1..1494 | 17..1511 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:15:39 Download gff for
BO02565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| d4-RA | 176..1683 | 9..1519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:32 Download gff for
BO02565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| d4-RA | 203..1693 | 17..1509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:03 Download gff for
BO02565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| d4-RA | 176..1683 | 9..1519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:50 Download gff for
BO02565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| d4-RA | 203..1693 | 17..1509 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:50 Download gff for
BO02565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5295116..5295891 | 732..1509 | 99 | | Plus |
| 2R | 5294265..5294712 | 17..464 | 100 | -> | Plus |
| 2R | 5294797..5295063 | 465..731 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:32 Download gff for
BO02565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1181770..1182217 | 17..464 | 100 | -> | Plus |
| arm_2R | 1182302..1182568 | 465..731 | 100 | -> | Plus |
| arm_2R | 1182621..1183396 | 732..1509 | 99 | | Plus |
BO02565.pep Sequence
Translation from 16 to 1525
> BO02565.pep
MASKSAYEKTLVVNIANFEKIQNFLNDKEKYKEILENSENFNTRLCIERR
LRMPFLDPQTGVAQTHCSLFMKKKQRMPGLRHGQIYTYPSSRWRKPKRQY
LLNPNQSFRAYQYREHNLQHSHHQTHQHHHHIPSSGVAVPQNPHLAESAA
IAATDGNSMGASGDNDSKDSHANVEKEWFHDEMDTSHFHHGDEFEDDFDS
DNDFDESYTSRGKRKKCSRPRRTNANVEGTPKRGRKGGGNRRKNAVEGES
DRKRRAGGNSANTSAAAAAAAAAVAHAACTAAAVASTGLYASHSNSASPI
PINDDNSQSGLILPTNISSSYDKTSSDAGASNDSIPLATMVAINAGLTTS
NVCNAHPVQTGTNQTVFATGNKVKQRVERDIAQPSPYCDFCLGDQRENKK
TNMPEELVSCSDCGRSGHPSCLQFTANMIISVKRYRWQCIECKYCSICGT
SDNDDQLLFCDDCDRGYHMYCLSPPLVTPPEGSWSCKLCMEEFHKIKASF
LDH
BO02565.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:17:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| d4-PA | 497 | CG2682-PA | 1..497 | 1..497 | 2687 | 100 | Plus |
| d4-PD | 496 | CG2682-PD | 1..496 | 1..497 | 2669 | 99.8 | Plus |
| d4-PC | 495 | CG2682-PC | 1..495 | 1..497 | 2662 | 99.6 | Plus |
| d4-PB | 339 | CG2682-PB | 1..339 | 159..497 | 1836 | 100 | Plus |
| tth-PC | 428 | CG12175-PC | 9..317 | 12..275 | 398 | 34.9 | Plus |
