BO02567.complete Sequence
1531 bp (1531 high quality bases) assembled on 2005-06-24
GenBank Submission: FJ629565
> BO02567.complete
GAAGTTATCAGTCGACATGGCCGACACGAAATCCGGTAGTGGTCGGCATT
CGGCTGCCGGGGGAAGTGGAAACGCCGTCCTGTCGCCCTTGGGGCAGGGT
CCTGCGAACTTGGAGTGTAAGGACTTTCAGGAGTATCTGCGCACCCGCCA
AACGCCAGAGTCGCTGGAGAAGCTGTACAACTATCCGCCCATTTGTTTGG
CCGTTTTTCGGGAGCTTCCAGAGATAGCCCGGCAGTTTATCATAAGGATA
CTGTTCGTGGATCAGCCTGTGCCACAAGCGGTGGTCACATCATGGGGTGC
CCAACGTTGTGCCAAGGAGCAAGCCGAGGCAACCAGCTGCCTGACGGCTT
TGAACGTCTGGCGGGTCACAGCCATTCCGGGTGGCCTTTCTGCGTGGGAG
CTCTCGCCCACCTTCAAGAAAAGCGTACGCCAGGTGCTGCTGGGCGGCGG
AAAACCTTGGCCTATGACCAACACGCTGGATAAGGACTCGAAGCCCAGGG
ACATTGCTTTTCTGGATACATACGCCATGTCCCGCTGGCGTTGCGTGTTG
CACTACATGGTCGGCACCGGAAATCGCAATGGCACCGATGCGGAGGCCAT
TAGTCCGGACGCCGTTCGGATTCTGCTGCACGCCAATCTCATGAAACGTG
ATGAACGAGACGGTATCACAATAACCCGGCAGGGCTTTCAGTTCCTGCTG
CTGGACACGCGAGCTCAGGTGTGGCATTTTATGCTACAGTACCTGGACAC
GTGCGAAGAAAGAGGAATCAGCCTGCCGGAATGCTTGTCCATGTTGTTCC
AGCTCAGTTTTTCAACGCTGGGCAGGGATTACAGTTCCGAGGGCATGAAC
AGTCAGATGCTGACATTCCTGCAGCATCTACGGGAGTTTGGACTGGTCTT
CCAACGTAAGCGTAAGGAGGGACGCTTCTATCCCACACGTTTGGCTCTGA
ATGTGACAAGCAAGGAGGCGGCTGCGACTGCATCTGTGGCCATGGATGAG
GAGGCCACTCAGGACTGTGGCTACATTGTGGTGGAGACGAACTACCGAGT
GTATGCCTACACTGATTCTCCGCTCCAGGTAGCCGTGTTAGGTCTGTTCA
CGGAGCTTCTCTACCGCTTTCCCAATCTCGTCGTGGGCGTGCTAACCCGC
GATTCAGTGCGCCAGGCGTTGCGTGGCGGTATCACGGCAGAGCAGATTGT
CTCGTATCTGGAGCAGTATGCGCATCCCAATATGCGCATGGTCGAGTCAG
CCATTCACTCTAAATCCTGCCTGCCACCCACAGTCGTTGATCAAATTAAG
CTGTGGGAATTAGAGCGAAATCGCTTCACCTACACCGAAGGCGTGCTGTA
CAATCAGTTCCTCTCGCATACAGATTTCGTAACGCTACGAGACTACGCCC
AGTCGATCCACATGCTGGTGTGGCAAAATGAGCGAACTCGCACAATGGTG
GTGCAAAAGAATGGCCACGACGATGTCAAGCGTTACTGGAAGAAGTACTC
TAAGAGTGGTGTTGCAAGCTTTCTAGACCAT
BO02567.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mrn-RA | 1500 | CG7764-PA | 1..1497 | 17..1513 | 7485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:37:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mrn-RA | 1714 | CG7764-RA | 27..1528 | 12..1513 | 7495 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:36:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15578955..15580152 | 1513..316 | 5990 | 100 | Minus |
| 3L | 28110227 | 3L | 15580207..15580511 | 316..12 | 1510 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:36:59 has no hits.
BO02567.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:43:10 Download gff for
BO02567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tfb2-RA | 1..1500 | 17..1514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:13:14 Download gff for
BO02567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tfb2-RA | 165..1670 | 12..1519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:23 Download gff for
BO02567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrn-RA | 32..1528 | 17..1515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:43:10 Download gff for
BO02567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tfb2-RA | 165..1670 | 12..1519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:33 Download gff for
BO02567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mrn-RA | 32..1528 | 17..1515 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:33 Download gff for
BO02567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15578951..15580152 | 316..1515 | 99 | <- | Minus |
| 3L | 15580208..15580506 | 17..315 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:23 Download gff for
BO02567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15572051..15573252 | 316..1515 | 99 | <- | Minus |
| arm_3L | 15573308..15573606 | 17..315 | 100 | | Minus |
BO02567.pep Sequence
Translation from 16 to 1531
> BO02567.pep
MADTKSGSGRHSAAGGSGNAVLSPLGQGPANLECKDFQEYLRTRQTPESL
EKLYNYPPICLAVFRELPEIARQFIIRILFVDQPVPQAVVTSWGAQRCAK
EQAEATSCLTALNVWRVTAIPGGLSAWELSPTFKKSVRQVLLGGGKPWPM
TNTLDKDSKPRDIAFLDTYAMSRWRCVLHYMVGTGNRNGTDAEAISPDAV
RILLHANLMKRDERDGITITRQGFQFLLLDTRAQVWHFMLQYLDTCEERG
ISLPECLSMLFQLSFSTLGRDYSSEGMNSQMLTFLQHLREFGLVFQRKRK
EGRFYPTRLALNVTSKEAAATASVAMDEEATQDCGYIVVETNYRVYAYTD
SPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLEQ
YAHPNMRMVESAIHSKSCLPPTVVDQIKLWELERNRFTYTEGVLYNQFLS
HTDFVTLRDYAQSIHMLVWQNERTRTMVVQKNGHDDVKRYWKKYSKSGVA
SFLDH
BO02567.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:17:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mrn-PA | 499 | CG7764-PA | 1..499 | 1..499 | 2611 | 100 | Plus |
