BO02582.complete Sequence
1609 bp (1609 high quality bases) assembled on 2005-06-24
GenBank Submission: FJ629566
> BO02582.complete
GAAGTTATCAGTCGACATGTGTTCCACCTCGGTGCTGTGTCCGCTCTGCG
CGGTGCCCAGTTTCGGCAGTATTGACGCACTGCAGCAGAGGCTGATCAAG
GCGGCCAACGGCCCACTGGCCTGTCCCTTTGCCAACTGCAAGGAGCTCTT
CCTGGGGCTGGACAAGCTCACCATCCACCTGTTCTCGCACACAAGTCTGA
TGGCTCAGGAGGGAAACGAGAGTCCAGCGAATGGCCAACCCGCCTCGTCC
CGGGGCTTCCTTGCCGCAGCTCCTCCCAAACGGAGGGCCAAGCGAACCAG
GTCCAAGCCCGTCGTCCCAACCCCACCGCCTGTGCGGACCACCCCGCCCG
CCCACTGCGACATTTGCGAGTTCAGTTTCCGGAATACCGAGCTGAGGGAC
ATGCACGTCCGCTTAGTCCACGAAAATGCGGAGGGAGAACCCAAGCAAAA
GGAACCCCAACAGAAGGAACCGGACCAGGAGCCCTACAAGTGCCATCTCT
GCTCCAAGACGTTCCGAATGAAGGGCTCCCTTCGAATCCACCTGAAAGTA
GTGCACATGATGGGCGTGCCCTGCTCCAATCCCAATCCAAATCCTAATCC
CAGTCCTACACCCGCTTCTACCACCAGTGCAGTTACTGCCACGCCCAAGC
TGAGCATTTGCGATCGCATTCGACACACAGAGCCTGGAGCCCTTGGCAAC
GGAAATAACTCCACGTGCACCGCATCCCAGCCATACGCGCTGAGTGGGGC
GCTGAGCATGCTCCAGCAGTCCCCCAGTTCGCCGGAGTCGGGCACGGCCA
CCCCGAAGCTGTGGGAGTGCGATGTGTGCAGCAAGTCCTTCACCACCAAG
TACTTTCTGAAGAAGCACAAGCGGCTCCACACCGGCGAGATGCCGTACAC
ATGCGAGATCTGCGCCAGGACCTTCACCTTCCAGCAGTCGTACCACAAGC
ATTTGCTCTACCACAGCGAGGTAAAGCCCCATGTCTGCGGGGTTTGTGGA
CGCGCCTTCAAGGAACTGTCTACGCTGCATAACCACCAGAGGATTCACAG
CGGCGAAAAGCCCTTCAAGTGCGAAGTCTGCGGCAAGTGTTTCCGGCAGC
GAGTCTCTTTCCTTGTCCACACGCGCATCCACACGGGAGTGATGCCCTAC
AAGTGCGAGCTCTGCCAAAAGACGTTCAGGTACAAGGTCAGTCAAAGGAC
CCATCGATGTCCCACCGAGGAGGCCCAGACACCGGAGCAGCTGATAAAGG
CGTTCCTGGAGGGCAACGACTCGCATACTCAGCCTTCACCAGCGAGCGCC
GAAATAGCTGCCATCAACAGCAGCTCCATTGTGGATCCTGAGCAGGAGGC
ACTGCTTTCGCAGTCAATCGACGACATTGTCGTTGAGCAGTGCCAAAAGC
TGGGCATCTGTGGTGTGGAGCCGCGGGAGGAGGGACAGCTCATATCCCTA
CAGCCGGTTGCGGTGGTACACTTCAGCGGGAATGGCTCTCCGCTGCAGCA
ACTCCAGAACTTGAGAATCTACTCACCGCAACAAACAGAGCTACCTAGTT
CCGATGGCGAAGTCTTCCAGCGCTTTTTGATGGACGCCACGGCAAGCTTT
CTAGACCAT
BO02582.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:33:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14655-RA | 1578 | CG14655-PA | 1..1575 | 17..1591 | 7875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:33:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14655-RA | 2137 | CG14655-RA | 225..1803 | 13..1591 | 7880 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:33:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4778509..4779120 | 1083..472 | 3060 | 100 | Minus |
| 3R | 32079331 | 3R | 4777831..4778340 | 1591..1082 | 2550 | 100 | Minus |
| 3R | 32079331 | 3R | 4779618..4780078 | 473..13 | 2290 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:33:09 has no hits.
BO02582.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:43:11 Download gff for
BO02582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14655-RA | 1..1578 | 17..1592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:13:15 Download gff for
BO02582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14655-RA | 254..1837 | 13..1599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:59:35 Download gff for
BO02582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14655-RA | 229..1803 | 17..1593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:43:11 Download gff for
BO02582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14655-RA | 254..1837 | 13..1599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:04 Download gff for
BO02582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14655-RA | 229..1803 | 17..1593 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:04 Download gff for
BO02582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4777829..4778339 | 1083..1593 | 99 | <- | Minus |
| 3R | 4778510..4779119 | 473..1082 | 100 | <- | Minus |
| 3R | 4779619..4780074 | 17..472 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:59:35 Download gff for
BO02582.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 603551..604061 | 1083..1593 | 99 | <- | Minus |
| arm_3R | 604232..604841 | 473..1082 | 100 | <- | Minus |
| arm_3R | 605341..605796 | 17..472 | 100 | | Minus |
BO02582.pep Sequence
Translation from 16 to 1609
> BO02582.pep
MCSTSVLCPLCAVPSFGSIDALQQRLIKAANGPLACPFANCKELFLGLDK
LTIHLFSHTSLMAQEGNESPANGQPASSRGFLAAAPPKRRAKRTRSKPVV
PTPPPVRTTPPAHCDICEFSFRNTELRDMHVRLVHENAEGEPKQKEPQQK
EPDQEPYKCHLCSKTFRMKGSLRIHLKVVHMMGVPCSNPNPNPNPSPTPA
STTSAVTATPKLSICDRIRHTEPGALGNGNNSTCTASQPYALSGALSMLQ
QSPSSPESGTATPKLWECDVCSKSFTTKYFLKKHKRLHTGEMPYTCEICA
RTFTFQQSYHKHLLYHSEVKPHVCGVCGRAFKELSTLHNHQRIHSGEKPF
KCEVCGKCFRQRVSFLVHTRIHTGVMPYKCELCQKTFRYKVSQRTHRCPT
EEAQTPEQLIKAFLEGNDSHTQPSPASAEIAAINSSSIVDPEQEALLSQS
IDDIVVEQCQKLGICGVEPREEGQLISLQPVAVVHFSGNGSPLQQLQNLR
IYSPQQTELPSSDGEVFQRFLMDATASFLDH
BO02582.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:33:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14655-PA | 525 | CG14655-PA | 1..525 | 1..525 | 2821 | 100 | Plus |
| Clamp-PA | 561 | CG1832-PA | 357..552 | 237..445 | 356 | 33.6 | Plus |
| Clamp-PB | 566 | CG1832-PB | 362..557 | 237..445 | 356 | 33.6 | Plus |
| erm-PB | 603 | CG31670-PB | 278..464 | 232..418 | 330 | 34.9 | Plus |
| erm-PA | 611 | CG31670-PA | 286..472 | 232..418 | 330 | 34.9 | Plus |
| erm-PB | 603 | CG31670-PB | 262..468 | 188..396 | 288 | 30.3 | Plus |
