Clone Sequence Records
BO03049.5prime Sequence
240 bp (239 high quality bases) assembled on 2005-11-30
> BO03049.5prime
GAAGTTATCAGTCGACATGTCTGCCACTAAGGTGAACCATTTGATCGGAG
CGACTACGCGCTACATTGCCGGACGGAATGCGGTGCAGACGGTCTACTGG
CGCACCTCAGCCGGACCCAATCCCCGGATGCTGAAGACCAACAAGCTGCA
GAACTTCGATCGCACCCAGAAGGCGCCTCAGAGTGTACGGATGCAGAACT
ATGATCGCAGCTATATCCGTGATAAGAAGCTTTCTAGACC
BO03049.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:45:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13315-PA | 210 | CG13315-RA | 1..207 | 17..223 | 1035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:52:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13315-RB | 498 | CG13315-RB | 135..341 | 17..223 | 1035 | 100 | Plus |
CG13315-RA | 618 | CG13315-RA | 135..341 | 17..223 | 1035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:51:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9097011..9097217 | 17..223 | 1035 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:51:59 has no hits.
BO03049.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:39:00 Download gff for
BO03049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13315-PA | 1..210 | 17..226 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:41:04 Download gff for
BO03049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13315-PA | 1..210 | 17..226 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:34:24 Download gff for
BO03049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13315-RA | 135..349 | 17..232 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:16:11 Download gff for
BO03049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13315-RA | 135..349 | 17..232 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:16:11 Download gff for
BO03049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9097011..9097225 | 17..232 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:34:24 Download gff for
BO03049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9090111..9090325 | 17..232 | 98 | | Plus |
BO03049.3prime Sequence
240 bp (239 high quality bases) assembled on 2005-11-30
> BO03049.3prime
ATGGTCTAGAAAGCTTCTTATCACGGATATAGCTGCGATCATAGTTCTGC
ATCCGTACACTCTGAGGCGCCTTCTGGGTGCGATCGAAGTTCTGCAGCTT
GTTGGTCTTCAGCATCCGGGGATTGGGTCCGGCTGAGGTGCGCCAGTAGA
CCGTCTGCACCGCATTCCGTCCGGCAATGTAGCGCGTAGTCGCTCCGATC
AAATGGTTCACCTTAGTGGCAGACATGTCGACTGATAACT
BO03049.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:45:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13315-PA | 210 | CG13315-RA | 1..207 | 226..20 | 1035 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:56:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13315-RB | 498 | CG13315-RB | 135..341 | 226..20 | 1035 | 100 | Minus |
CG13315-RA | 618 | CG13315-RA | 135..341 | 226..20 | 1035 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:56:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9097011..9097217 | 226..20 | 1035 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 14:56:22 has no hits.
BO03049.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:38:59 Download gff for
BO03049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13315-PA | 1..210 | 17..226 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:41:03 Download gff for
BO03049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13315-PA | 1..210 | 17..226 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 10:58:27 Download gff for
BO03049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13315-RA | 135..349 | 11..226 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:39:33 Download gff for
BO03049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13315-RA | 135..349 | 11..226 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:39:33 Download gff for
BO03049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9097011..9097225 | 11..226 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 10:58:27 Download gff for
BO03049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9090111..9090325 | 11..226 | 98 | | Minus |
BO03049.complete Sequence
242 bp assembled on 2011-06-28
> BO03049.complete
GAAGTTATCAGTCGACATGTCTGCCACTAAGGTGAACCATTTGATCGGAG
CGACTACGCGCTACATTGCCGGACGGAATGCGGTGCAGACGGTCTACTGG
CGCACCTCAGCCGGACCCAATCCCCGGATGCTGAAGACCAACAAGCTGCA
GAACTTCGATCGCACCCAGAAGGCGCCTCAGAGTGTACGGATGCAGAACT
ATGATCGCAGCTATATCCGTGATAAGAAGCTTTCTAGACCAT
BO03049.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:00:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13315-RB | 210 | CG13315-PB | 1..207 | 17..223 | 1035 | 100 | Plus |
CG13315-RA | 210 | CG13315-PA | 1..207 | 17..223 | 1035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13315-RB | 498 | CG13315-RB | 135..341 | 17..223 | 1035 | 100 | Plus |
CG13315-RA | 618 | CG13315-RA | 135..341 | 17..223 | 1035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9097011..9097217 | 17..223 | 1035 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:00:31 has no hits.
BO03049.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:15:52 Download gff for
BO03049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13315-RA | 136..345 | 17..226 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:00 Download gff for
BO03049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13315-RA | 135..344 | 17..226 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:03 Download gff for
BO03049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13315-RA | 135..344 | 17..226 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:03 Download gff for
BO03049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9097011..9097220 | 17..226 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:00 Download gff for
BO03049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9090111..9090320 | 17..226 | 99 | | Plus |
BO03049.pep Sequence
Translation from 16 to 241
> BO03049.pep
MSATKVNHLIGATTRYIAGRNAVQTVYWRTSAGPNPRMLKTNKLQNFDRT
QKAPQSVRMQNYDRSYIRDKKLSRP
BO03049.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:49:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13315-PB | 69 | CG13315-PB | 1..69 | 1..69 | 361 | 100 | Plus |
CG13315-PA | 69 | CG13315-PA | 1..69 | 1..69 | 361 | 100 | Plus |