Clone Sequence Records
BO03268.3prime Sequence
888 bp (846 high quality bases) assembled on 2005-11-30
> BO03268.3prime
ATGGTCTAGAAAGCTTCTCGGCCTCTGTTTCAGCGCCTTTTAGACGCAGA
CGGGCAAAGTCCTCAAAAATTATGTCGTCATCTTGTGCCTCGTCGTCGTC
CAGCTGAATGAGATTTGTTGTCGTTGGCACATCCTGCCCGCCAGTAGCCG
ATTCAGTTTCTCCGTCACTCATGCTCACTAACGGCAGACCCCCGCCTGCT
AAACTAGCCCGTGGCGATCGCTCCCCTAACAGTGGATGCTCTTCCTCCTC
GGGCTTAGGGTGCATTAGTGTGAATGGCAGCTCAGCTACGAGGTCACCAT
TTAGAAGTGGCGAGCTAATCAGCAACTTCACCTTCACCTTATAGTGGACC
ATAATACCGAGACTCTCACGCTGAGCAGGATTGGTAATGAGAGTGCTAGA
CGCCAAATTGGTGTCCTCATGCTTTAGCTGCCCGTCCAAAGCAAGGCCCC
ATTTATCCTTATTATTTGCCAATAGGGGGCACAACTCAAATACCTTCGAG
AGTGTAAATCCCGGAGCCACTTGACATCCGTCTTCTGACTCGATTTCTGC
CACTACAGATTTATATTGCGCCGTCGAAAAGAGACAAATATCCGCAAACT
GCCGGACACATACCTTAATCTTTTTTACCGTCCGATTTGAGTTGTTGGCC
ACATGAACGTTGACCGATATTTTTTCGCCGTGGTGGTATAACTCCTTGTC
CAAAGTAGCTTCCAAATGGATCTTGTTTGGCTTCATCATAAACTCCTTGC
TTACTTCGATCGATGGCTGCTCACCGACTTTGGATGGTGCGTACATGACT
TTGCGAATAGTTAGTCGCACCGAGTTCCGCTTGTGGGGTTTGTCCTCCAC
GTTCTCACCCACAAAGGCCTTCAGCTCGTAGTCTACTC
BO03268.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:47:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1487-PA | 1413 | krz-RA | 542..1410 | 888..20 | 4345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:30:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| krz-RB | 1988 | CG1487-RB | 696..1568 | 888..16 | 4350 | 99.9 | Minus |
| krz-RA | 5281 | CG1487-RA | 696..1568 | 888..16 | 4350 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:30:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 32049027..32049870 | 16..859 | 4205 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:30:50 has no hits.
BO03268.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:41:02 Download gff for
BO03268.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| krz-PA | 542..1413 | 17..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:44:02 Download gff for
BO03268.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1487-PA | 542..1413 | 17..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:31:01 Download gff for
BO03268.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| krz-RA | 696..1568 | 16..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:16:52 Download gff for
BO03268.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| krz-RA | 696..1568 | 16..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:16:52 Download gff for
BO03268.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 32049032..32049869 | 21..858 | 100 | <- | Plus |
| 3R | 32051269..32051298 | 859..888 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:31:01 Download gff for
BO03268.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27874754..27875591 | 21..858 | 100 | <- | Plus |
| arm_3R | 27876991..27877020 | 859..888 | 100 | | Plus |
BO03268.5prime Sequence
865 bp (760 high quality bases) assembled on 2005-11-30
> BO03268.5prime
GAAGTTATCAGTCGACATGAACGGTGGTGGTGGAGGAAGTGGAGGAGCAA
ATGTGAGCAATGGCTCCAGCACCAATGTAACAGCTGCCGGGAGCACTGGG
GGCGGAAGCGCAGGCGACGAGACTGGTGGAGATGCCAGCTCCAGACGCCA
GGCGACTCGGGTGTTTAAGAAGAGCTCCTCCAACGGCAAGATAACAGTTT
ACCTTGGCAAACGGGACTTCGTCGACCATGTCACGCACGTGGATCCCATT
GACGGTGTTGTCTTCATTGATCCAGAGTACGTAAAGGACCGTAAGGTTTT
TGGCCAGGTGCTTGCCGCCTTTCGGTACGGACGTGAAGACCTAGATGTTT
TGGGATTAACGTTCCGTAAGGACCTGTATCTGGCGCATGAGCAGATCTAT
CCGCCCATGCAGCTGGACCGCCCGATGACCCGGCTTCAGGAAAGGTTAAT
TAAAAAGCTGGGGCCGAACGCCCATCCGTTTTATTTTGAGGTTCCGCCCT
ATTGCCCAGCCTCTGTGTCCTTGCAGCCGGCTCCTGGAGATGTGGGCAAG
TCTTGCGGAGTAGACTACGAGCTGAAGGCCTTTGTGGGTGAGAACGTGGA
GGACAAACCCCACAAGCGGAACTCGGTGCGACTAACTATTCGCAAAGTCA
TGTACGCACCATCCAAAGTCGGTGAGCAGCCATCGATCGAAGTAAGCAAG
GAGTTTATGATGAAGCCAAACAAGATCCATTTGGAAGCTACTTTGGACAA
GGAGTTATACCACCACGGCGAAAAAATATCGGTCAACGTTCATGTGGCCA
ACAACTCAAATCGGACGGTAAAAAAGATTAANGTATGTGTCCGGCAGTTT
GCGGATATTTGTCTC
BO03268.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:47:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1487-PA | 1413 | krz-RA | 1..849 | 17..865 | 4226 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:21:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| krz-RB | 1988 | CG1487-RB | 155..1003 | 17..865 | 4234 | 99.9 | Plus |
| krz-RA | 5281 | CG1487-RA | 155..1003 | 17..865 | 4234 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:21:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 32051264..32051839 | 592..17 | 2880 | 100 | Minus |
| 3R | 32079331 | 3R | 32049592..32049870 | 865..587 | 1384 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:21:29 has no hits.
BO03268.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:41:03 Download gff for
BO03268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| krz-PA | 1..849 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:44:03 Download gff for
BO03268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1487-PA | 1..849 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:26:01 Download gff for
BO03268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| krz-RA | 151..1003 | 9..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:41:29 Download gff for
BO03268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| krz-RA | 151..1003 | 9..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:41:29 Download gff for
BO03268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 32049592..32049869 | 588..865 | 99 | <- | Minus |
| 3R | 32051269..32051843 | 9..587 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:26:01 Download gff for
BO03268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27875314..27875591 | 588..865 | 99 | <- | Minus |
| arm_3R | 27876991..27877565 | 9..587 | 99 | | Minus |
BO03268.complete Sequence
1445 bp assembled on 2010-04-09
GenBank Submission: MN238596
> BO03268.complete
GAAGTTATCAGTCGACATGAACGGTGGTGGTGGAGGAAGTGGAGGAGCAA
ATGTGAGCAATGGCTCCAGCACCAATGTAACAGCTGCCGGGAGCACTGGG
GGCGGAAGCGCAGGCGACGAGACTGGTGGAGATGCCAGCTCCAGACGCCA
GGCGACTCGGGTGTTTAAGAAGAGCTCCTCCAACGGCAAGATAACAGTTT
ACCTTGGCAAACGGGACTTCGTCGACCATGTCACGCACGTGGATCCCATT
GACGGTGTTGTCTTCATTGATCCAGAGTACGTAAAGGACCGTAAGGTTTT
TGGCCAGGTGCTTGCCGCCTTTCGGTACGGACGTGAAGACCTAGATGTTT
TGGGATTAACGTTCCGTAAGGACCTGTATCTGGCGCATGAGCAGATCTAT
CCGCCCATGCAGCTGGACCGCCCGATGACCCGGCTTCAGGAAAGGTTAAT
TAAAAAGCTGGGGCCGAACGCCCATCCGTTTTATTTTGAGGTTCCGCCCT
ATTGCCCAGCCTCTGTGTCCTTGCAGCCGGCTCCTGGAGATGTGGGCAAG
TCTTGCGGAGTAGACTACGAGCTGAAGGCCTTTGTGGGTGAGAACGTGGA
GGACAAACCCCACAAGCGGAACTCGGTGCGACTAACTATTCGCAAAGTCA
TGTACGCACCATCCAAAGTCGGTGAGCAGCCATCGATCGAAGTAAGCAAG
GAGTTTATGATGAAGCCAAACAAGATCCATTTGGAAGCTACTTTGGACAA
GGAGTTATACCACCACGGCGAAAAAATATCGGTCAACGTTCATGTGGCCA
ACAACTCAAATCGGACGGTAAAAAAGATTAAGGTATGTGTCCGGCAGTTT
GCGGATATTTGTCTCTTTTCGACGGCGCAATATAAATCTGTAGTGGCAGA
AATCGAGTCAGAAGACGGATGTCAAGTGGCTCCGGGATTTACACTCTCGA
AGGTATTTGAGTTGTGCCCCCTATTGGCAAATAATAAGGATAAATGGGGC
CTTGCTTTGGACGGGCAGCTAAAGCATGAGGACACCAATTTGGCGTCTAG
CACTCTCATTACCAATCCTGCTCAGCGTGAGAGTCTCGGTATTATGGTCC
ACTATAAGGTGAAGGTGAAGTTGCTGATTAGCTCGCCACTTCTAAATGGT
GACCTCGTAGCTGAGCTGCCATTCACACTAATGCACCCTAAGCCCGAGGA
GGAAGAGCATCCACTGTTAGGGGAGCGATCGCCACGGGCTAGTTTAGCAG
GCGGGGGTCTGCCGTTAGTGAGCATGAGTGACGGAGAAACTGAATCGGCT
ACTGGCGGGCAGGATGTGCCAACGACAACAAATCTCATTCAGCTGGACGA
CGACGAGGCACAAGATGACGACATAATTTTTGAGGACTTTGCCCGTCTGC
GTCTAAAAGGCGCTGAAACAGAGGCCGAGAAGCTTTCTAGACCAT
BO03268.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:43:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| krz-RB | 1413 | CG1487-PB | 1..1410 | 17..1426 | 7050 | 100 | Plus |
| krz-RA | 1413 | CG1487-PA | 1..1410 | 17..1426 | 7050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:43:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| krz-RB | 1988 | CG1487-RB | 155..1568 | 17..1430 | 7055 | 99.9 | Plus |
| krz-RA | 5281 | CG1487-RA | 155..1568 | 17..1430 | 7055 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:43:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 32049027..32049870 | 1430..587 | 4205 | 99.9 | Minus |
| 3R | 32079331 | 3R | 32051264..32051839 | 592..17 | 2880 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:43:32 has no hits.
BO03268.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:29:15 Download gff for
BO03268.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| krz-RA | 151..1563 | 17..1429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:56 Download gff for
BO03268.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| krz-RA | 155..1567 | 17..1429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:23:42 Download gff for
BO03268.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| krz-RA | 155..1567 | 17..1429 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:23:42 Download gff for
BO03268.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 32049028..32049869 | 588..1429 | 99 | <- | Minus |
| 3R | 32051269..32051839 | 17..587 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:56 Download gff for
BO03268.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27874750..27875591 | 588..1429 | 99 | <- | Minus |
| arm_3R | 27876991..27877561 | 17..587 | 100 | | Minus |
BO03268.pep Sequence
Translation from 16 to 1444
> BO03268.pep
MNGGGGGSGGANVSNGSSTNVTAAGSTGGGSAGDETGGDASSRRQATRVF
KKSSSNGKITVYLGKRDFVDHVTHVDPIDGVVFIDPEYVKDRKVFGQVLA
AFRYGREDLDVLGLTFRKDLYLAHEQIYPPMQLDRPMTRLQERLIKKLGP
NAHPFYFEVPPYCPASVSLQPAPGDVGKSCGVDYELKAFVGENVEDKPHK
RNSVRLTIRKVMYAPSKVGEQPSIEVSKEFMMKPNKIHLEATLDKELYHH
GEKISVNVHVANNSNRTVKKIKVCVRQFADICLFSTAQYKSVVAEIESED
GCQVAPGFTLSKVFELCPLLANNKDKWGLALDGQLKHEDTNLASSTLITN
PAQRESLGIMVHYKVKVKLLISSPLLNGDLVAELPFTLMHPKPEEEEHPL
LGERSPRASLAGGGLPLVSMSDGETESATGGQDVPTTTNLIQLDDDEAQD
DDIIFEDFARLRLKGAETEAEKLSRP
BO03268.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:58:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| krz-PB | 470 | CG1487-PB | 1..470 | 1..470 | 2439 | 100 | Plus |
| krz-PA | 470 | CG1487-PA | 1..470 | 1..470 | 2439 | 100 | Plus |
| Arr1-PB | 364 | CG5711-PB | 6..353 | 48..396 | 931 | 50.6 | Plus |
| Arr1-PA | 364 | CG5711-PA | 6..353 | 48..396 | 931 | 50.6 | Plus |
| Arr2-PA | 401 | CG5962-PA | 4..394 | 46..463 | 880 | 43.3 | Plus |
