Clone BO03270 Report

Search the DGRC for BO03270

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:32
Well:70
Vector:pDNR-Dual
Associated Gene/Transcriptru-RA
Protein status:BO03270.pep: Imported from assembly
Sequenced Size:1058

Clone Sequence Records

BO03270.3prime Sequence

897 bp (774 high quality bases) assembled on 2005-11-30

> BO03270.3prime
ATGGTCTAGAAAGCTTTCTTCCCATTCCGAGGTCATTCATCAGATGCTGC
CTGATCACCTGGCCCTCCTCCTCGGCCAGAAGTTGAGCTGTGACCGTATT
CACCAAGTTGAAGGCGATTCCAAAGGCGCTGAATATGCACCATACGCCCA
GGGCCAACCAGCGGAGTGGGCGTGGTCGCAGCCCACCATCCAGTTGCCGG
AGAAGCAGCAGACCCACACTAATCCCGGCCAGAGCACCGGTCATGTGAGC
GATATAGGAGACAGAGGGTCGTGTCTGCAGCTGATGCATTGCCAGTTCTC
TTGAATAGAGGGCATACCCCAAATCGCAGAAAACGAACAAAATCACAGCC
ATTAGCTGAATTACCCCGTGTCTCATTTGACCAAAGTTGAGCAAAAGACT
CGCCAGTTGGGCGGCCAGCAAGGCGTAAACTCCTCCACTGGCTCCCACCA
GAAAAACTTCCGAGTCCACCACCGAAGTTCCCAAAGAGCCAGCCAAAACT
CCGGCCATATAAATGACTCCCGTTCTCAGCGATCCATGTACCAGCTCCAA
TGGCACACCGAACAGGAGCTGAGTGAGCACATTGTAACCCAGATGGAGCC
AACTGGCGTGGAGCAGGGCATAGCTAAGGAATCTCCAGAGCTGCAGGCGC
TGGTCGGGTCGATATACCAGAAGAGAATCCTCTGGTGGATCAGCACCCAC
CCATAGAAACACGAGAACCTCAAGGAGCGTGGCGAGGATAATGAAAAAGG
GCGGAATCCACTTGAAAGGCGCGGCAGACCCTTCATGATGTTTCGCCCTG
TGATCCCCCAATCCGGGGGATTGCTCTTGGTTGCTGCTGCTCCGGATGCC
CGTTGCACTGGCTGCACCGCCATCAGCTGGTCACAGCAGACGCCCAG

BO03270.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1214-PA 1026 ru-RA 239..1023 804..20 3925 100 Minus
CG1214-PA 1026 ru-RA 145..238 897..804 445 98.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
ru-RA 1798 CG1214-RA 465..1343 897..20 4355 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1386210..1386596 720..334 1935 100 Minus
3L 28110227 3L 1386668..1386982 334..20 1575 100 Minus
3L 28110227 3L 1384661..1384842 897..717 845 98.9 Minus
Blast to na_te.dros performed on 2015-02-11 15:59:12 has no hits.

BO03270.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:41:04 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:44:05 Download gff for BO03270.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1214-PA 145..1026 17..897 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:49:15 Download gff for BO03270.3prime
Subject Subject Range Query Range Percent Splice Strand
ru-RA 465..1346 17..897 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:32:38 Download gff for BO03270.3prime
Subject Subject Range Query Range Percent Splice Strand
ru-RA 465..1346 17..897 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:32:38 Download gff for BO03270.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1384661..1384840 719..897 98 -> Minus
3L 1386212..1386596 334..718 100 -> Minus
3L 1386669..1386985 17..333 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:49:15 Download gff for BO03270.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1384661..1384840 719..897 98 -> Minus
arm_3L 1386212..1386596 334..718 100 -> Minus
arm_3L 1386669..1386985 17..333 99   Minus

BO03270.5prime Sequence

872 bp (754 high quality bases) assembled on 2005-11-30

> BO03270.5prime
GAAGTTATCAGTCGACATGCTCCTGCTAAGTGGGGCACCGTCACAAGGCA
GACGCCCCAAAAATAGACCCCTCATCGGAACGGTGGAGGAGGGGGAGATG
CCGCCCAGTACCGTTCTGCAAATGCCGCCGGCTCCGTTGTCATCGAAATC
CGGACTGGTGCTGGGCGTCTGCTGTGACCAGCTGATGGCGGTGCAGCCAG
TGCAACGGGCATCCGGAGCAGCAGCAACCAAGAGCAATTCCCCGGATTGG
GGGAATCACAGGGCGAAACATCATGAAGGGTCTGCCGCGCCTTTCAAGTG
GATTCCGCCCTTTTTCATTATCCTCGCCACGCTCCTTGAGGTTCTCGTGT
TTCTATGGGTGGGTGCTGATCCACCAGAGGATTCTCTTCTGGTATATCGA
CCCGACCAGCGCCTGCAGCTCTGGAGATTCCTTAGCTATGCCCTGCTCCA
CGCCAGTTGGCTCCATCTGGGTTACAATGTGCTCACTCAGCTCCTGTTCG
GTGTGCCATTGGAGCTGGTACATGGATCGCTGAGAACGGGAGTCATTTAT
ATGGCCGGAGTTTTGGCTGGCTCTTTGGGAACTTCGGTGGTGGACTCGGA
AGTTTTTCTGGTGGGAGCCAGTGGAGGAGTTTACGCCTTGCTGGCCGCCC
AACTGGCGAGTCTTTTGCTCAACTTTGGTCAAATGAGACACGGGGTAATT
CAGCTAATGGCTGTGATTTTGTTCGTTTTCTGCGATTTGGGGTATGCCCT
CTATTCAAGAGAACTGGGCATGCATCAGCTGCAGACACGACCCTCTGTCT
CCTATATCGCTCACATGACCGGTGCTCTGGGCGGGATTAGTGTGGGTCTG
CTGCTTCTCCNGCAACTGGATG

BO03270.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1214-PA 1026 ru-RA 1..856 17..872 4186 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
ru-RA 1798 CG1214-RA 321..1176 17..872 4224 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1386210..1386596 339..725 1935 100 Plus
3L 28110227 3L 1384517..1384842 17..342 1630 100 Plus
3L 28110227 3L 1386668..1386815 725..872 684 97.3 Plus
Blast to na_te.dros performed on 2015-02-09 18:25:32 has no hits.

BO03270.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:41:05 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:44:06 Download gff for BO03270.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1214-PA 1..856 17..872 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:56:22 Download gff for BO03270.5prime
Subject Subject Range Query Range Percent Splice Strand
ru-RA 311..1176 8..872 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:10:57 Download gff for BO03270.5prime
Subject Subject Range Query Range Percent Splice Strand
ru-RA 311..1176 8..872 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:10:57 Download gff for BO03270.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1384507..1384840 8..340 98 -> Plus
3L 1386212..1386596 341..725 100 -> Plus
3L 1386669..1386815 726..872 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:56:22 Download gff for BO03270.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1384507..1384840 8..340 98 -> Plus
arm_3L 1386212..1386596 341..725 100 -> Plus
arm_3L 1386669..1386815 726..872 97   Plus

BO03270.complete Sequence

1058 bp assembled on 2011-06-28

> BO03270.complete
GAAGTTATCAGTCGACATGCTCCTGCTAAGTGGGGCACCGTCACAAGGCA
GACGCCCCAAAAATAGACCCCTCATCGGAACGGTGGAGGAGGGGGAGATG
CCGCCCAGTACCGTTCTGCAAATGCCGCCGGCTCCGTTGTCATCGAAATC
CGGACTGGTGCTGGGCGTCTGCTGTGACCAGCTGATGGCGGTGCAGCCAG
TGCAACGGGCATCCGGAGCAGCAGCAACCAAGAGCAATTCCCCGGATTGG
GGGAATCACAGGGCGAAACATCATGAAGGGTCTGCCGCGCCTTTCAAGTG
GATTCCGCCCTTTTTCATTATCCTCGCCACGCTCCTTGAGGTTCTCGTGT
TTCTATGGGTGGGTGCTGATCCACCAGAGGATTCTCTTCTGGTATATCGA
CCCGACCAGCGCCTGCAGCTCTGGAGATTCCTTAGCTATGCCCTGCTCCA
CGCCAGTTGGCTCCATCTGGGTTACAATGTGCTCACTCAGCTCCTGTTCG
GTGTGCCATTGGAGCTGGTACATGGATCGCTGAGAACGGGAGTCATTTAT
ATGGCCGGAGTTTTGGCTGGCTCTTTGGGAACTTCGGTGGTGGACTCGGA
AGTTTTTCTGGTGGGAGCCAGTGGAGGAGTTTACGCCTTGCTGGCCGCCC
AACTGGCGAGTCTTTTGCTCAACTTTGGTCAAATGAGACACGGGGTAATT
CAGCTAATGGCTGTGATTTTGTTCGTTTTCTGCGATTTGGGGTATGCCCT
CTATTCAAGAGAACTGGCAATGCATCAGCTGCAGACACGACCCTCTGTCT
CCTATATCGCTCACATGACCGGTGCTCTGGCCGGGATTAGTGTGGGTCTG
CTGCTTCTCCGGCAACTGGATGGTGGGCTGCGACCACGCCCACTCCGCTG
GTTGGCCCTGGGCGTATGGTGCATATTCAGCGCCTTTGGAATCGCCTTCA
ACTTGGTGAATACGGTCACAGCTCAACTTCTGGCCGAGGAGGAGGGCCAG
GTGATCAGGCAGCATCTGATGAATGACCTCGGAATGGGAAGAAAGCTTTC
TAGACCAT

BO03270.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
ru-RA 1026 CG1214-PA 1..1023 17..1039 5115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
ru-RA 1798 CG1214-RA 321..1343 17..1039 5115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1386210..1386596 339..725 1935 100 Plus
3L 28110227 3L 1384517..1384842 17..342 1630 100 Plus
3L 28110227 3L 1386668..1386982 725..1039 1575 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:00:45 has no hits.

BO03270.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:15:53 Download gff for BO03270.complete
Subject Subject Range Query Range Percent Splice Strand
ru-RA 329..1353 17..1041 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:06 Download gff for BO03270.complete
Subject Subject Range Query Range Percent Splice Strand
ru-RA 321..1345 17..1041 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:09 Download gff for BO03270.complete
Subject Subject Range Query Range Percent Splice Strand
ru-RA 321..1345 17..1041 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:09 Download gff for BO03270.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1386212..1386596 341..725 100 -> Plus
3L 1384517..1384840 17..340 100 -> Plus
3L 1386669..1386984 726..1041 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:06 Download gff for BO03270.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1384517..1384840 17..340 100 -> Plus
arm_3L 1386212..1386596 341..725 100 -> Plus
arm_3L 1386669..1386984 726..1041 99   Plus

BO03270.pep Sequence

Translation from 16 to 1057

> BO03270.pep
MLLLSGAPSQGRRPKNRPLIGTVEEGEMPPSTVLQMPPAPLSSKSGLVLG
VCCDQLMAVQPVQRASGAAATKSNSPDWGNHRAKHHEGSAAPFKWIPPFF
IILATLLEVLVFLWVGADPPEDSLLVYRPDQRLQLWRFLSYALLHASWLH
LGYNVLTQLLFGVPLELVHGSLRTGVIYMAGVLAGSLGTSVVDSEVFLVG
ASGGVYALLAAQLASLLLNFGQMRHGVIQLMAVILFVFCDLGYALYSREL
AMHQLQTRPSVSYIAHMTGALAGISVGLLLLRQLDGGLRPRPLRWLALGV
WCIFSAFGIAFNLVNTVTAQLLAEEEGQVIRQHLMNDLGMGRKLSRP

BO03270.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
ru-PA 341 CG1214-PA 1..341 1..341 1756 100 Plus
rho-PB 355 CG1004-PB 28..354 24..340 740 46.7 Plus
rho-PA 355 CG1004-PA 28..354 24..340 740 46.7 Plus
stet-PA 330 CG33166-PA 66..306 97..315 626 51.9 Plus
stet-PB 485 CG33166-PB 221..461 97..315 626 51.9 Plus