Clone Sequence Records
BO03270.3prime Sequence
897 bp (774 high quality bases) assembled on 2005-11-30
> BO03270.3prime
ATGGTCTAGAAAGCTTTCTTCCCATTCCGAGGTCATTCATCAGATGCTGC
CTGATCACCTGGCCCTCCTCCTCGGCCAGAAGTTGAGCTGTGACCGTATT
CACCAAGTTGAAGGCGATTCCAAAGGCGCTGAATATGCACCATACGCCCA
GGGCCAACCAGCGGAGTGGGCGTGGTCGCAGCCCACCATCCAGTTGCCGG
AGAAGCAGCAGACCCACACTAATCCCGGCCAGAGCACCGGTCATGTGAGC
GATATAGGAGACAGAGGGTCGTGTCTGCAGCTGATGCATTGCCAGTTCTC
TTGAATAGAGGGCATACCCCAAATCGCAGAAAACGAACAAAATCACAGCC
ATTAGCTGAATTACCCCGTGTCTCATTTGACCAAAGTTGAGCAAAAGACT
CGCCAGTTGGGCGGCCAGCAAGGCGTAAACTCCTCCACTGGCTCCCACCA
GAAAAACTTCCGAGTCCACCACCGAAGTTCCCAAAGAGCCAGCCAAAACT
CCGGCCATATAAATGACTCCCGTTCTCAGCGATCCATGTACCAGCTCCAA
TGGCACACCGAACAGGAGCTGAGTGAGCACATTGTAACCCAGATGGAGCC
AACTGGCGTGGAGCAGGGCATAGCTAAGGAATCTCCAGAGCTGCAGGCGC
TGGTCGGGTCGATATACCAGAAGAGAATCCTCTGGTGGATCAGCACCCAC
CCATAGAAACACGAGAACCTCAAGGAGCGTGGCGAGGATAATGAAAAAGG
GCGGAATCCACTTGAAAGGCGCGGCAGACCCTTCATGATGTTTCGCCCTG
TGATCCCCCAATCCGGGGGATTGCTCTTGGTTGCTGCTGCTCCGGATGCC
CGTTGCACTGGCTGCACCGCCATCAGCTGGTCACAGCAGACGCCCAG
BO03270.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:47:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1214-PA | 1026 | ru-RA | 239..1023 | 804..20 | 3925 | 100 | Minus |
CG1214-PA | 1026 | ru-RA | 145..238 | 897..804 | 445 | 98.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:59:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ru-RA | 1798 | CG1214-RA | 465..1343 | 897..20 | 4355 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:59:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1386210..1386596 | 720..334 | 1935 | 100 | Minus |
3L | 28110227 | 3L | 1386668..1386982 | 334..20 | 1575 | 100 | Minus |
3L | 28110227 | 3L | 1384661..1384842 | 897..717 | 845 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:59:12 has no hits.
BO03270.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:41:04 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:44:05 Download gff for
BO03270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1214-PA | 145..1026 | 17..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:49:15 Download gff for
BO03270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ru-RA | 465..1346 | 17..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:32:38 Download gff for
BO03270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ru-RA | 465..1346 | 17..897 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:32:38 Download gff for
BO03270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1384661..1384840 | 719..897 | 98 | -> | Minus |
3L | 1386212..1386596 | 334..718 | 100 | -> | Minus |
3L | 1386669..1386985 | 17..333 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:49:15 Download gff for
BO03270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1384661..1384840 | 719..897 | 98 | -> | Minus |
arm_3L | 1386212..1386596 | 334..718 | 100 | -> | Minus |
arm_3L | 1386669..1386985 | 17..333 | 99 | | Minus |
BO03270.5prime Sequence
872 bp (754 high quality bases) assembled on 2005-11-30
> BO03270.5prime
GAAGTTATCAGTCGACATGCTCCTGCTAAGTGGGGCACCGTCACAAGGCA
GACGCCCCAAAAATAGACCCCTCATCGGAACGGTGGAGGAGGGGGAGATG
CCGCCCAGTACCGTTCTGCAAATGCCGCCGGCTCCGTTGTCATCGAAATC
CGGACTGGTGCTGGGCGTCTGCTGTGACCAGCTGATGGCGGTGCAGCCAG
TGCAACGGGCATCCGGAGCAGCAGCAACCAAGAGCAATTCCCCGGATTGG
GGGAATCACAGGGCGAAACATCATGAAGGGTCTGCCGCGCCTTTCAAGTG
GATTCCGCCCTTTTTCATTATCCTCGCCACGCTCCTTGAGGTTCTCGTGT
TTCTATGGGTGGGTGCTGATCCACCAGAGGATTCTCTTCTGGTATATCGA
CCCGACCAGCGCCTGCAGCTCTGGAGATTCCTTAGCTATGCCCTGCTCCA
CGCCAGTTGGCTCCATCTGGGTTACAATGTGCTCACTCAGCTCCTGTTCG
GTGTGCCATTGGAGCTGGTACATGGATCGCTGAGAACGGGAGTCATTTAT
ATGGCCGGAGTTTTGGCTGGCTCTTTGGGAACTTCGGTGGTGGACTCGGA
AGTTTTTCTGGTGGGAGCCAGTGGAGGAGTTTACGCCTTGCTGGCCGCCC
AACTGGCGAGTCTTTTGCTCAACTTTGGTCAAATGAGACACGGGGTAATT
CAGCTAATGGCTGTGATTTTGTTCGTTTTCTGCGATTTGGGGTATGCCCT
CTATTCAAGAGAACTGGGCATGCATCAGCTGCAGACACGACCCTCTGTCT
CCTATATCGCTCACATGACCGGTGCTCTGGGCGGGATTAGTGTGGGTCTG
CTGCTTCTCCNGCAACTGGATG
BO03270.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:47:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1214-PA | 1026 | ru-RA | 1..856 | 17..872 | 4186 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:25:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ru-RA | 1798 | CG1214-RA | 321..1176 | 17..872 | 4224 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:25:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1386210..1386596 | 339..725 | 1935 | 100 | Plus |
3L | 28110227 | 3L | 1384517..1384842 | 17..342 | 1630 | 100 | Plus |
3L | 28110227 | 3L | 1386668..1386815 | 725..872 | 684 | 97.3 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:25:32 has no hits.
BO03270.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:41:05 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:44:06 Download gff for
BO03270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1214-PA | 1..856 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:56:22 Download gff for
BO03270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ru-RA | 311..1176 | 8..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:10:57 Download gff for
BO03270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ru-RA | 311..1176 | 8..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:10:57 Download gff for
BO03270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1384507..1384840 | 8..340 | 98 | -> | Plus |
3L | 1386212..1386596 | 341..725 | 100 | -> | Plus |
3L | 1386669..1386815 | 726..872 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:56:22 Download gff for
BO03270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1384507..1384840 | 8..340 | 98 | -> | Plus |
arm_3L | 1386212..1386596 | 341..725 | 100 | -> | Plus |
arm_3L | 1386669..1386815 | 726..872 | 97 | | Plus |
BO03270.complete Sequence
1058 bp assembled on 2011-06-28
> BO03270.complete
GAAGTTATCAGTCGACATGCTCCTGCTAAGTGGGGCACCGTCACAAGGCA
GACGCCCCAAAAATAGACCCCTCATCGGAACGGTGGAGGAGGGGGAGATG
CCGCCCAGTACCGTTCTGCAAATGCCGCCGGCTCCGTTGTCATCGAAATC
CGGACTGGTGCTGGGCGTCTGCTGTGACCAGCTGATGGCGGTGCAGCCAG
TGCAACGGGCATCCGGAGCAGCAGCAACCAAGAGCAATTCCCCGGATTGG
GGGAATCACAGGGCGAAACATCATGAAGGGTCTGCCGCGCCTTTCAAGTG
GATTCCGCCCTTTTTCATTATCCTCGCCACGCTCCTTGAGGTTCTCGTGT
TTCTATGGGTGGGTGCTGATCCACCAGAGGATTCTCTTCTGGTATATCGA
CCCGACCAGCGCCTGCAGCTCTGGAGATTCCTTAGCTATGCCCTGCTCCA
CGCCAGTTGGCTCCATCTGGGTTACAATGTGCTCACTCAGCTCCTGTTCG
GTGTGCCATTGGAGCTGGTACATGGATCGCTGAGAACGGGAGTCATTTAT
ATGGCCGGAGTTTTGGCTGGCTCTTTGGGAACTTCGGTGGTGGACTCGGA
AGTTTTTCTGGTGGGAGCCAGTGGAGGAGTTTACGCCTTGCTGGCCGCCC
AACTGGCGAGTCTTTTGCTCAACTTTGGTCAAATGAGACACGGGGTAATT
CAGCTAATGGCTGTGATTTTGTTCGTTTTCTGCGATTTGGGGTATGCCCT
CTATTCAAGAGAACTGGCAATGCATCAGCTGCAGACACGACCCTCTGTCT
CCTATATCGCTCACATGACCGGTGCTCTGGCCGGGATTAGTGTGGGTCTG
CTGCTTCTCCGGCAACTGGATGGTGGGCTGCGACCACGCCCACTCCGCTG
GTTGGCCCTGGGCGTATGGTGCATATTCAGCGCCTTTGGAATCGCCTTCA
ACTTGGTGAATACGGTCACAGCTCAACTTCTGGCCGAGGAGGAGGGCCAG
GTGATCAGGCAGCATCTGATGAATGACCTCGGAATGGGAAGAAAGCTTTC
TAGACCAT
BO03270.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:00:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ru-RA | 1026 | CG1214-PA | 1..1023 | 17..1039 | 5115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ru-RA | 1798 | CG1214-RA | 321..1343 | 17..1039 | 5115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1386210..1386596 | 339..725 | 1935 | 100 | Plus |
3L | 28110227 | 3L | 1384517..1384842 | 17..342 | 1630 | 100 | Plus |
3L | 28110227 | 3L | 1386668..1386982 | 725..1039 | 1575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:00:45 has no hits.
BO03270.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:15:53 Download gff for
BO03270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ru-RA | 329..1353 | 17..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:06 Download gff for
BO03270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ru-RA | 321..1345 | 17..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:09 Download gff for
BO03270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ru-RA | 321..1345 | 17..1041 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:09 Download gff for
BO03270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1386212..1386596 | 341..725 | 100 | -> | Plus |
3L | 1384517..1384840 | 17..340 | 100 | -> | Plus |
3L | 1386669..1386984 | 726..1041 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:06 Download gff for
BO03270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1384517..1384840 | 17..340 | 100 | -> | Plus |
arm_3L | 1386212..1386596 | 341..725 | 100 | -> | Plus |
arm_3L | 1386669..1386984 | 726..1041 | 99 | | Plus |
BO03270.pep Sequence
Translation from 16 to 1057
> BO03270.pep
MLLLSGAPSQGRRPKNRPLIGTVEEGEMPPSTVLQMPPAPLSSKSGLVLG
VCCDQLMAVQPVQRASGAAATKSNSPDWGNHRAKHHEGSAAPFKWIPPFF
IILATLLEVLVFLWVGADPPEDSLLVYRPDQRLQLWRFLSYALLHASWLH
LGYNVLTQLLFGVPLELVHGSLRTGVIYMAGVLAGSLGTSVVDSEVFLVG
ASGGVYALLAAQLASLLLNFGQMRHGVIQLMAVILFVFCDLGYALYSREL
AMHQLQTRPSVSYIAHMTGALAGISVGLLLLRQLDGGLRPRPLRWLALGV
WCIFSAFGIAFNLVNTVTAQLLAEEEGQVIRQHLMNDLGMGRKLSRP
BO03270.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:51:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ru-PA | 341 | CG1214-PA | 1..341 | 1..341 | 1756 | 100 | Plus |
rho-PB | 355 | CG1004-PB | 28..354 | 24..340 | 740 | 46.7 | Plus |
rho-PA | 355 | CG1004-PA | 28..354 | 24..340 | 740 | 46.7 | Plus |
stet-PA | 330 | CG33166-PA | 66..306 | 97..315 | 626 | 51.9 | Plus |
stet-PB | 485 | CG33166-PB | 221..461 | 97..315 | 626 | 51.9 | Plus |