Clone BO03320 Report

Search the DGRC for BO03320

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:33
Well:20
Vector:pDNR-Dual
Associated Gene/Transcriptmsi-RA
Protein status:BO03320.pep: Imported from assembly
Sequenced Size:1853

Clone Sequence Records

BO03320.3prime Sequence

823 bp (684 high quality bases) assembled on 2005-11-30

> BO03320.3prime
ATGGTCTAGAAAGCTTTTTGACGTACATGCCCATGCCGTACATGGTGCTC
CAATCGACGCCCTGGAAGCTGGACATGTCCACGTTGGCCAGCGCATAGTT
GGAGTAGGCAGCCGCCGGATTGGCAGCAGCGGCGGCGGCGGCAGCAGCGG
CATTCAGGGGATTGCCGGCCATTAAGCCAGCTTGCTGAGCGGCAGCGGCC
AGGCTGTGGGCTCCAGCGGCACCTGCCCCATTCGCGGCATTGGCCGCCAG
GGCGGCAGCCGCTGCTGCCGAGTGCGCCTGCGAAGCGGGATTCGAGACGG
CGTTGTGGTGGCTCTGCTGCTGCTGCTGGGCGGCGGCCACATGGGCATTG
TGGGTCTGCTGCTGGTGATGATGCTGCTGCTGTTGCTGCTGCTGGTGATG
ATGGGCAGCGGCGGCCACGCTTTGCGCCTGATGAGCCTGCATCAAGGCGG
CGTTGGCAGTGGCGGCGCTGGCGGGGATCGAGTAGGGTGCATATCTGACG
CTATGCAGCGCAGTCTGCGGATATGTGGTCAACAGCTTGCCGAAGCCAGC
CTGATTGGCAATCGAGGCTGCCGCAGCGGCGTTTTGTACTTGAAATGGGT
TCTGTGATATGAGGGCGGCCTGCTGGGCGGCAGCGGCTGCTGCCGGGGAT
TGCAGTAGCTGTGTGGGATTTTGAAGCATGGCCAGTGGGTTCATGGTGGC
CACGCCGGCACCACGGGCTCCAATCAGCTGGCCAGGAGCTGTGGGCAGCT
GGACGCCGAGGGTGCCCCACATAATGCGCTTCTGGAGAAGCTGAACAGCC
GGTGTGACTGCTTCCTTGGGCTG

BO03320.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5099-PB 1905 msi-RB 1099..1902 823..20 3970 99.7 Minus
CG5099-PA 1821 msi-RA 1015..1818 823..20 3970 99.7 Minus
CG5488-PA 1938 B-H2-RA 351..389 404..366 145 94.8 Minus
CG3619-PA 2502 Dl-RA 2092..2120 123..151 145 100 Plus
CG3619-PB 2502 Dl-RB 2092..2120 123..151 145 100 Plus
CG14307-PA 1551 fru-RA 573..599 122..148 135 100 Plus
CG14307-PD 1998 fru-RD 573..599 122..148 135 100 Plus
CG14307-PF 2067 fru-RF 573..599 122..148 135 100 Plus
CG14307-PH 2088 fru-RH 573..599 122..148 135 100 Plus
CG14307-PK 2118 fru-RK 603..629 122..148 135 100 Plus
CG14307-PB 2370 fru-RB 876..902 122..148 135 100 Plus
CG14307-PG 2391 fru-RG 876..902 122..148 135 100 Plus
CG14307-PL 2565 fru-RL 573..599 122..148 135 100 Plus
CG14307-PM 2565 fru-RM 573..599 122..148 135 100 Plus
CG14307-PC 2565 fru-RC 573..599 122..148 135 100 Plus
CG14307-PI 2613 fru-RI 621..647 122..148 135 100 Plus
CG14307-PJ 2721 fru-RJ 729..755 122..148 135 100 Plus
CG14307-PE 2868 fru-RE 876..902 122..148 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
msi-RH 2676 CG5099-RH 1481..2284 823..20 3990 99.8 Minus
msi-RF 10175 CG5099-RF 1693..2496 823..20 3990 99.8 Minus
msi-RE 2840 CG5099-RE 1645..2448 823..20 3990 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25600268..25600744 496..20 2385 100 Minus
3R 32079331 3R 25599882..25600210 823..495 1615 99.4 Minus
Blast to na_te.dros performed 2015-02-09 18:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6868 414..302 215 68.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6890 414..261 190 62.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2427 403..302 188 66 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6827 403..302 179 65 Minus
roo 9092 roo DM_ROO 9092bp 1053..1160 412..296 178 68.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2451 403..302 167 67 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2348..2499 440..296 163 62.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6824..6956 403..274 162 60.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2772..2869 403..306 157 62.2 Minus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 641..734 316..409 154 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2409..2529 414..299 132 61.2 Minus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3218..3321 401..302 121 63.8 Minus

BO03320.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:41:28 Download gff for BO03320.3prime
Subject Subject Range Query Range Percent Splice Strand
msi-PB 1099..1905 17..823 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:44:39 Download gff for BO03320.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5099-PA 1015..1821 17..823 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:56:27 Download gff for BO03320.3prime
Subject Subject Range Query Range Percent Splice Strand
msi-RE 1645..2451 17..823 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:10:59 Download gff for BO03320.3prime
Subject Subject Range Query Range Percent Splice Strand
msi-RE 1645..2451 17..823 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:10:59 Download gff for BO03320.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25599882..25600210 495..823 99 -> Minus
3R 25600270..25600747 17..494 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:56:27 Download gff for BO03320.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21425604..21425932 495..823 99 -> Minus
arm_3R 21425992..21426469 17..494 99   Minus

BO03320.5prime Sequence

891 bp (745 high quality bases) assembled on 2005-11-30

> BO03320.5prime
GAAGTTATCAGTCGACATGCACGCGCTTCAGGAAGGCGCCACCGTGCTGC
ACCACCAGCAGCCACCGCCACCCACTTCTGGCGAGGATCACCTGCTCACC
GCTGATAGTTTCTTTTATGCACGCAGCAATCCCATGGAGAACGCGGCCGC
AGCAGCCGCCGCCGCAGCAGCGGGCTTGATTGATCCGCACCACAATCGCG
ATCTCCACCAGGCGCTGGTGGCCTCGATAGCCAATAATAGTGTGGCCGCC
ATCGGCGGTGGCCTGACCACAGCGGCAGTCTTGAAGAGTGCCGCTCAGCA
GTCCCAGCAGGCGGTGCAACAGAACCAGAACGCGGTAGTGGTGACACCGG
GACTGGAACAGCCCAAACAGGAACCAGCCCAACAGGCGGCACTGGCGCTG
CTCAAGGAGAATGTAAACGCCTCCGCCGGAGCGGGACAGAACAACGGTCA
GGCGGCCATGGGTGGCAGCAACAAGAGCGGCTCCTCTGGCAGATCCACGC
CCAGCCTGAGCGGAGGCAGTGGCTCCGATCCGGCACCCGGCAAACTCTTT
GTCGGCGGTCTCAGCTGGCAGACGTCGTCTGACAAGCTCAAGGAATACTT
CAACATGTTCGGCACCGTCACCGATGTGCTCATCATGAAGGATCCCGTCA
CCCAGCGCAGTCGCGGCTTTGGTTTCATCACATTCCAAGAACCCTGCACC
GTGGAGAAGGTTCTCAAGGTGCCCATTCACACACTCGATGGCAAGAAGAT
CGATCCCAAGCATGCCACCCCAAAGAATCGACCTCGTCAGGCCAACAAGA
CCAAGAAGATCTTCGTGGGGCGGCGTCTCACAGGATACTTCGGGCGAGGA
GGGTTAGGCTTACTTCAGCCAGTTCGGACCCGTCGAGGAGA

BO03320.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5099-PA 1821 msi-RA 1..803 17..819 4015 100 Plus
CG5099-PB 1905 msi-RB 194..887 126..819 3470 100 Plus
CG5099-PA 1821 msi-RA 801..874 818..891 295 95.9 Plus
CG5099-PB 1905 msi-RB 885..958 818..891 295 95.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
msi-RA 3984 CG5099-RA 490..1363 17..891 4305 99.5 Plus
msi-RD 2801 CG5099-RD 700..1465 125..891 3765 99.5 Plus
msi-RF 10175 CG5099-RF 788..1552 126..891 3760 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25594964..25595602 17..655 3195 100 Plus
3R 32079331 3R 25599504..25599741 653..891 1100 98.3 Plus
Blast to na_te.dros performed on 2015-02-13 01:32:00 has no hits.

BO03320.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:41:29 Download gff for BO03320.5prime
Subject Subject Range Query Range Percent Splice Strand
msi-PA 1..873 17..890 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:44:41 Download gff for BO03320.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5099-PA 1..873 17..890 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:31:09 Download gff for BO03320.5prime
Subject Subject Range Query Range Percent Splice Strand
msi-RA 484..1362 9..890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:21:02 Download gff for BO03320.5prime
Subject Subject Range Query Range Percent Splice Strand
msi-RA 484..1362 9..890 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:21:02 Download gff for BO03320.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25594958..25595602 9..655 99 -> Plus
3R 25599507..25599740 656..890 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:31:09 Download gff for BO03320.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21420680..21421324 9..655 99 -> Plus
arm_3R 21425229..21425462 656..890 98   Plus

BO03320.complete Sequence

1853 bp assembled on 2011-06-28

> BO03320.complete
GAAGTTATCAGTCGACATGCACGCGCTTCAGGAAGGCGCCACCGTGCTGC
ACCACCAGCAGCCACCGCCACCCACTTCTGGCGAGGATCACCTGCTCACC
GCTGATAGTTTCTTTTATGCACGCAGCAATCCCATGGAGAACGCGGCCGC
AGCAGCCGCCGCCGCAGCAGCGGGCTTGATTGATCCGCACCACAATCGCG
ATCTCCACCAGGCGCTGGTGGCCTCGATAGCCAATAATAGTGTGGCCGCC
ATCGGCGGTGGCCTGACCACAGCGGCAGTCTTGAAGAGTGCCGCTCAGCA
GTCCCAGCAGGCGGTGCAACAGAACCAGAACGCGGTAGTGGTGACACCGG
GACTGGAACAGCCCAAACAGGAACCAGCCCAACAGGCGGCACTGGCGCTG
CTCAAGGAGAATGTAAACGCCTCCGCCGGAGCGGGACAGAACAACGGTCA
GGCGGCCATGGGTGGCAGCAACAAGAGCGGCTCCTCTGGCAGATCCACGC
CCAGCCTGAGCGGAGGCAGTGGCTCCGATCCGGCACCCGGCAAACTCTTT
GTCGGCGGTCTCAGCTGGCAGACGTCGTCTGACAAGCTCAAGGAATACTT
CAACATGTTCGGCACCGTCACCGATGTGCTCATCATGAAGGATCCCGTCA
CCCAGCGCAGTCGCGGCTTTGGTTTCATCACATTCCAAGAACCCTGCACC
GTGGAGAAGGTTCTCAAGGTGCCCATTCACACACTCGATGGCAAGAAGAT
CGATCCCAAGCATGCCACCCCAAAGAATCGACCTCGTCAGGCCAACAAGA
CCAAGAAGATCTTCGTGGGCGGCGTCTCACAGGATACTTCGGCCGAGGAG
GTTAAGGCTTACTTCAGCCAGTTCGGACCCGTCGAGGAGACGGTTATGTT
GATGGACCAGCAGACAAAGCGCCACCGTGGCTTCGGATTTGTCACCTTTG
AGAATGAGGATGTGGTCGATCGCGTATGTGAGATTCACTTCCACACCATC
AAGAACAAGAAGGTCGAGTGCAAGAAGGCACAGCCCAAGGAAGCAGTCAC
ACCGGCTGCTCAGCTTCTCCAGAAGCGCATTATGTTGGGCACCCTCGGCG
TCCAGCTGCCCACAGCTCCTGGCCAGCTGATTGGAGCCCGTGGTGCCGGC
GTGGCCACCATGAACCCACTGGCCATGCTTCAAAATCCCACACAGCTACT
GCAATCCCCGGCAGCAGCCGCTGCCGCCCAGCAGGCCGCCCTCATATCAC
AGAACCCATTTCAAGTACAAAACGCCGCTGCGGCAGCCTCGATTGCCAAT
CAGGCTGGCTTCGGCAAGCTGTTGACCACATATCCGCAGACTGCGCTGCA
TAGCGTCAGATATGCACCCTACTCGATCCCCGCCAGCGCCGCCACTGCCA
ACGCCGCCTTGATGCAGGCTCATCAGGCGCAAAGCGTGGCCGCCGCTGCC
CATCATCACCAGCAGCAGCAACAGCAGCAGCATCATCACCAGCAGCAGAC
CCACAATGCCCATGTGGCCGCCGCCCAGCAGCAGCAGCAGAGCCACCACA
ACGCCGTCTCGAATCCCGCTTCGCAGGCGCACTCGGCAGCAGCGGCTGCC
GCCCTGGCGGCCAATGCCGCGAATGGGGCAGGTGCCGCTGGAGCCCACAG
CCTGGCCGCTGCCGCTCAGCAAGCTGGCTTAATGGCCGGCAATCCCCTGA
ATGCCGCTGCTGCCGCCGCCGCCGCTGCTGCCAATCCGGCGGCTGCCTAC
TCCAACTATGCGCTGGCCAACGTGGACATGTCCAGCTTCCAGGGCGTCGA
TTGGAGCACCATGTACGGCATGGGCATGTACGTCAAAAAGCTTTCTAGAC
CAT

BO03320.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
msi-RA 1821 CG5099-PA 1..1818 17..1834 9090 100 Plus
msi-RD 1818 CG5099-PD 106..1815 125..1834 8550 100 Plus
msi-RF 1905 CG5099-PF 194..1902 126..1834 8545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
msi-RA 3984 CG5099-RA 490..2307 17..1834 9090 100 Plus
msi-RD 2801 CG5099-RD 700..2409 125..1834 8550 100 Plus
msi-RF 10175 CG5099-RF 788..2496 126..1834 8545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25599504..25600210 653..1359 3535 100 Plus
3R 32079331 3R 25594964..25595602 17..655 3195 100 Plus
3R 32079331 3R 25600268..25600744 1358..1834 2385 100 Plus
Blast to na_te.dros performed 2014-11-26 16:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6868 1440..1552 215 68.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6890 1440..1593 190 62.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2427 1451..1552 188 66 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6827 1451..1552 179 65 Plus
roo 9092 roo DM_ROO 9092bp 1053..1160 1442..1558 178 68.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2451 1451..1552 167 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2348..2499 1414..1558 163 62.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6824..6956 1451..1580 162 60.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2772..2869 1451..1548 157 62.2 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 641..734 1538..1445 154 65.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2409..2529 1440..1555 132 61.2 Plus

BO03320.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:06 Download gff for BO03320.complete
Subject Subject Range Query Range Percent Splice Strand
msi-RA 452..2269 17..1834 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:52:24 Download gff for BO03320.complete
Subject Subject Range Query Range Percent Splice Strand
msi-RA 490..2307 17..1834 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:16 Download gff for BO03320.complete
Subject Subject Range Query Range Percent Splice Strand
msi-RA 490..2307 17..1834 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:16 Download gff for BO03320.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25594964..25595602 17..655 100 -> Plus
3R 25599507..25600210 656..1359 100 -> Plus
3R 25600270..25600744 1360..1834 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:52:24 Download gff for BO03320.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21420686..21421324 17..655 100 -> Plus
arm_3R 21425229..21425932 656..1359 100 -> Plus
arm_3R 21425992..21426466 1360..1834 100   Plus

BO03320.pep Sequence

Translation from 16 to 1852

> BO03320.pep
MHALQEGATVLHHQQPPPPTSGEDHLLTADSFFYARSNPMENAAAAAAAA
AAGLIDPHHNRDLHQALVASIANNSVAAIGGGLTTAAVLKSAAQQSQQAV
QQNQNAVVVTPGLEQPKQEPAQQAALALLKENVNASAGAGQNNGQAAMGG
SNKSGSSGRSTPSLSGGSGSDPAPGKLFVGGLSWQTSSDKLKEYFNMFGT
VTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHA
TPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQT
KRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEAVTPAAQL
LQKRIMLGTLGVQLPTAPGQLIGARGAGVATMNPLAMLQNPTQLLQSPAA
AAAAQQAALISQNPFQVQNAAAAASIANQAGFGKLLTTYPQTALHSVRYA
PYSIPASAATANAALMQAHQAQSVAAAAHHHQQQQQQQHHHQQQTHNAHV
AAAQQQQQSHHNAVSNPASQAHSAAAAAALAANAANGAGAAGAHSLAAAA
QQAGLMAGNPLNAAAAAAAAAANPAAAYSNYALANVDMSSFQGVDWSTMY
GMGMYVKKLSRP

BO03320.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
msi-PA 606 CG5099-PA 1..606 1..606 3078 100 Plus
msi-PD 605 CG5099-PD 36..605 37..606 2881 100 Plus
msi-PF 634 CG5099-PF 66..634 38..606 2877 100 Plus
msi-PE 618 CG5099-PE 50..618 38..606 2877 100 Plus
msi-PC 634 CG5099-PC 66..634 38..606 2877 100 Plus