Clone BO03369 Report

Search the DGRC for BO03369

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:33
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCbl-RA
Protein status:BO03369.pep: Imported from assembly
Sequenced Size:1379

Clone Sequence Records

BO03369.3prime Sequence

744 bp (701 high quality bases) assembled on 2005-11-30

> BO03369.3prime
ATGGTCTAGAAAGCTTCTTTACCTCAGTGTCGTCTTCTTCCTGCTGCTGC
TGTCGCCCATTGGTGACGTTCCGGTTGTGTTGCTTGCGCGGATCGAAAGC
GTCCACAACGATTTGTTCGGTGCCCTTGATTTCGGCCCGACAGAAGGGGC
AGCCCTGTCCCTCGGAATCCACTTGCCAGGAGGTAAGGCAGGGAGTGCAC
AACAAGTGGCCACAGGGCTCGATGCGGATATCTTTGTCGTTCTCCGCACA
GATTTTGCACAGCTGAAAGGTGCTGCCCATTTCACAGTATAGTTCGTATT
GCTCTTGGGTAACGGTTATGTGGTCCTCTGTGGGACTTTGAACGGCAGAC
GACAGATCCGGATTGTACGCTTGGCCATCTGGGTACAAGTAGAAGCCCTC
TCGATGGCCATCGAGCAGCGCCTGGCACAGCGACTTGTTCTGAGGGATTG
TCTGCAGAATCTCTCCCTCGGCAGTTACGTAGCCGATGGCCCATTGGCCC
AATCGCGTGCAGGAGAGCCGGAAAACGTAGCTGCCCGCCTTGAGGATGTA
GCGCTGTAGGCGAGCCTTCACCTCGTCGTATGTGAGAAACGCCACGTAGC
CCGGATGTGTGACGGCCAGAATCTGCCAGTTGCGTAGCAGGGTCACCCAA
GGCTGGAAGAGGCGTGTGAAGACGTCGAACTCGAAGTTGGAAATGAAGTC
GTTGCAGGTAAGATCGATAGTGGTCTTTAGGGCCATGGCCTCCA

BO03369.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7037-PA 1347 Cbl-RA 620..1344 744..20 3625 100 Minus
CG7037-PB 2637 Cbl-RB 620..1342 744..22 3615 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
Cbl-RA 2948 CG7037-RA 975..1699 744..20 3625 100 Minus
Cbl-RB 4902 CG7037-RB 975..1697 744..22 3615 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:00:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8426471..8426813 744..402 1715 100 Minus
3L 28110227 3L 8427269..8427406 157..20 690 100 Minus
3L 28110227 3L 8426901..8427027 402..276 635 100 Minus
3L 28110227 3L 8427091..8427214 277..154 620 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:00:25 has no hits.

BO03369.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:42:16 Download gff for BO03369.3prime
Subject Subject Range Query Range Percent Splice Strand
Cbl-PA 621..1347 17..743 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:45:50 Download gff for BO03369.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7037-PA 621..1347 17..743 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 10:59:11 Download gff for BO03369.3prime
Subject Subject Range Query Range Percent Splice Strand
Cbl-RA 976..1702 17..743 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:40:59 Download gff for BO03369.3prime
Subject Subject Range Query Range Percent Splice Strand
Cbl-RA 976..1702 17..743 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:40:59 Download gff for BO03369.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8426472..8426813 402..743 100 -> Minus
3L 8426902..8427026 277..401 100 -> Minus
3L 8427092..8427213 155..276 100 -> Minus
3L 8427272..8427409 17..154 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 10:59:11 Download gff for BO03369.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8419572..8419913 402..743 100 -> Minus
arm_3L 8420002..8420126 277..401 100 -> Minus
arm_3L 8420192..8420313 155..276 100 -> Minus
arm_3L 8420372..8420509 17..154 99   Minus

BO03369.5prime Sequence

837 bp (754 high quality bases) assembled on 2005-11-30

> BO03369.5prime
GAAGTTATCAGTCGACATGGCGACGAGAGGCAGTGGAACCCGTGTGCAAT
CGCAGCCAAAGATTTTCCCATCGCTGCTTTCCAAGCTGCACGGCGCTATC
TCGGAAGCCTGCGTCTCGCAGCGTCTGTCCACCGACAAGAAGACGCTGGA
GAAGACCTGGAAGTTGATGGACAAGGTGGTCAAACTGTGCCAGCAGCCGA
AGATGAATCTTAAGAATAGTCCACCGTTTATTTTGGACATCCTGCCGGAT
ACGTACCAGCGCCTGAGATTGATCTACTCAAAGAACGAGGACCAGATGCA
CCTGCTCCATGCCAACGAGCACTTCAACGTGTTCATCAACAACCTGATGC
GAAAGTGCAAGCAGGCCATCAAGTTGTTCAAGGAGGGCAAGGAGAAGATG
TTCGACGAGAACTCCCACTACCGCCGCAATCTCACCAAGCTCAGCCTGGT
CTTCTCCCACATGCTCAGCGAACTGAAGGCCATATTCCCCAACGGTGTCT
TTGCCGGGGATCAATTTCGGATCACCAAAGCGGATGCGGCTGACTTTTGG
AAGAGCAACTTCGGTAACAGCACATTGGTTCCCTGGAAAATCTTCCGGCA
GGAGCTTAACAAAGTACATCCCATAATCTCCGGCCTGGAGGCCATGGCCC
TAAAGACCACTATCGATCTTACCTGCAACGACTTCATTTCCAACTTCGAG
TTCGACGTCTTCACACGCCTCTTCCAGCCTTGGGTGACCCTGCTACGCAA
CTGGCAGATTCTGGCCGTCACACATCCGGGCTACGTGGCGTTTCTCACAT
ACGACGAGGTGAAGGCTCGCCTACAGCGCTACATCCT

BO03369.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7037-PA 1347 Cbl-RA 1..821 17..837 4105 100 Plus
CG7037-PB 2637 Cbl-RB 1..821 17..837 4105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
Cbl-RB 4902 CG7037-RB 356..1176 17..837 4105 100 Plus
Cbl-RA 2948 CG7037-RA 356..1176 17..837 4105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8425309..8425862 17..570 2770 100 Plus
3L 28110227 3L 8426403..8426672 568..837 1350 100 Plus
Blast to na_te.dros performed on 2015-02-09 18:26:04 has no hits.

BO03369.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:42:17 Download gff for BO03369.5prime
Subject Subject Range Query Range Percent Splice Strand
Cbl-PA 1..821 17..837 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:45:51 Download gff for BO03369.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7037-PB 1..821 17..837 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:56:32 Download gff for BO03369.5prime
Subject Subject Range Query Range Percent Splice Strand
Cbl-RA 349..1176 10..837 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:11:03 Download gff for BO03369.5prime
Subject Subject Range Query Range Percent Splice Strand
Cbl-RA 349..1176 10..837 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:11:03 Download gff for BO03369.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8425302..8425862 10..570 99 -> Plus
3L 8426406..8426672 571..837 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:56:32 Download gff for BO03369.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8418402..8418962 10..570 99 -> Plus
arm_3L 8419506..8419772 571..837 100   Plus

BO03369.complete Sequence

1379 bp assembled on 2011-06-28

> BO03369.complete
GAAGTTATCAGTCGACATGGCGACGAGAGGCAGTGGAACCCGTGTGCAAT
CGCAGCCAAAGATTTTCCCATCGCTGCTTTCCAAGCTGCACGGCGCTATC
TCGGAAGCCTGCGTCTCGCAGCGTCTGTCCACCGACAAGAAGACGCTGGA
GAAGACCTGGAAGTTGATGGACAAGGTGGTCAAACTGTGCCAGCAGCCGA
AGATGAATCTTAAGAATAGTCCACCGTTTATTTTGGACATCCTGCCGGAT
ACGTACCAGCGCCTGAGATTGATCTACTCAAAGAACGAGGACCAGATGCA
CCTGCTCCATGCCAACGAGCACTTCAACGTGTTCATCAACAACCTGATGC
GAAAGTGCAAGCAGGCCATCAAGTTGTTCAAGGAGGGCAAGGAGAAGATG
TTCGACGAGAACTCCCACTACCGCCGCAATCTCACCAAGCTCAGCCTGGT
CTTCTCCCACATGCTCAGCGAACTGAAGGCCATATTCCCCAACGGTGTCT
TTGCCGGGGATCAATTTCGGATCACCAAAGCGGATGCGGCTGACTTTTGG
AAGAGCAACTTCGGTAACAGCACATTGGTTCCCTGGAAAATCTTCCGGCA
GGAGCTTAACAAAGTACATCCCATAATCTCCGGCCTGGAGGCCATGGCCC
TAAAGACCACTATCGATCTTACCTGCAACGACTTCATTTCCAACTTCGAG
TTCGACGTCTTCACACGCCTCTTCCAGCCTTGGGTGACCCTGCTACGCAA
CTGGCAGATTCTGGCCGTCACACATCCGGGCTACGTGGCGTTTCTCACAT
ACGACGAGGTGAAGGCTCGCCTACAGCGCTACATCCTCAAGGCGGGCAGC
TACGTTTTCCGGCTCTCCTGCACGCGATTGGGCCAATGGGCCATCGGCTA
CGTAACTGCCGAGGGAGAGATTCTGCAGACAATCCCTCAGAACAAGTCGC
TGTGCCAGGCGCTGCTCGATGGCCATCGAGAGGGCTTCTACTTGTACCCA
GATGGCCAAGCGTACAATCCGGATCTGTCGTCTGCCGTTCAAAGTCCCAC
AGAGGACCACATAACCGTTACCCAAGAGCAATACGAACTATACTGTGAAA
TGGGCAGCACCTTTCAGCTGTGCAAAATCTGTGCGGAGAACGACAAAGAT
ATCCGCATCGAGCCCTGTGGCCACTTGTTGTGCACTCCCTGCCTTACCTC
CTGGCAAGTGGATTCCGAGGGACAGGGCTGCCCCTTCTGTCGGGCCGAAA
TCAAGGGCACCGAACAAATCGTTGTGGACGCTTTCGATCCGCGCAAGCAA
CACAACCGGAACGTCACCAATGGGCGACAGCAGCAGCAGGAAGAAGACGA
CACTGAGGTAAAGAAGCTTTCTAGACCAT

BO03369.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:01:15
Subject Length Description Subject Range Query Range Score Percent Strand
Cbl-RA 1347 CG7037-PA 1..1344 17..1360 6720 100 Plus
Cbl-RB 2637 CG7037-PB 1..1342 17..1358 6710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:16
Subject Length Description Subject Range Query Range Score Percent Strand
Cbl-RA 2948 CG7037-RA 356..1699 17..1360 6720 100 Plus
Cbl-RB 4902 CG7037-RB 356..1697 17..1358 6710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8425309..8425862 17..570 2770 100 Plus
3L 28110227 3L 8426403..8426813 568..978 2055 100 Plus
3L 28110227 3L 8427269..8427406 1223..1360 690 100 Plus
3L 28110227 3L 8426901..8427027 978..1104 635 100 Plus
3L 28110227 3L 8427091..8427214 1103..1226 620 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:01:14 has no hits.

BO03369.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:15:54 Download gff for BO03369.complete
Subject Subject Range Query Range Percent Splice Strand
Cbl-RA 365..1711 17..1363 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:18 Download gff for BO03369.complete
Subject Subject Range Query Range Percent Splice Strand
Cbl-RA 356..1702 17..1363 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:22 Download gff for BO03369.complete
Subject Subject Range Query Range Percent Splice Strand
Cbl-RA 356..1702 17..1363 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:22 Download gff for BO03369.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8425309..8425862 17..570 100 -> Plus
3L 8426406..8426813 571..978 100 -> Plus
3L 8426902..8427026 979..1103 100 -> Plus
3L 8427092..8427213 1104..1225 100 -> Plus
3L 8427272..8427409 1226..1363 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:18 Download gff for BO03369.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8420192..8420313 1104..1225 100 -> Plus
arm_3L 8420372..8420509 1226..1363 99   Plus
arm_3L 8418409..8418962 17..570 100 -> Plus
arm_3L 8419506..8419913 571..978 100 -> Plus
arm_3L 8420002..8420126 979..1103 100 -> Plus

BO03369.pep Sequence

Translation from 16 to 1378

> BO03369.pep
MATRGSGTRVQSQPKIFPSLLSKLHGAISEACVSQRLSTDKKTLEKTWKL
MDKVVKLCQQPKMNLKNSPPFILDILPDTYQRLRLIYSKNEDQMHLLHAN
EHFNVFINNLMRKCKQAIKLFKEGKEKMFDENSHYRRNLTKLSLVFSHML
SELKAIFPNGVFAGDQFRITKADAADFWKSNFGNSTLVPWKIFRQELNKV
HPIISGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQPWVTLLRNWQILA
VTHPGYVAFLTYDEVKARLQRYILKAGSYVFRLSCTRLGQWAIGYVTAEG
EILQTIPQNKSLCQALLDGHREGFYLYPDGQAYNPDLSSAVQSPTEDHIT
VTQEQYELYCEMGSTFQLCKICAENDKDIRIEPCGHLLCTPCLTSWQVDS
EGQGCPFCRAEIKGTEQIVVDAFDPRKQHNRNVTNGRQQQQEEDDTEVKK
LSRP

BO03369.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
Cbl-PA 448 CG7037-PA 1..448 1..448 2386 100 Plus
Cbl-PB 878 CG7037-PB 1..447 1..447 2382 100 Plus