Clone Sequence Records
BO03453.3prime Sequence
844 bp (803 high quality bases) assembled on 2005-11-30
> BO03453.3prime
ATGGTCTAGAAAGCTTCTTACAATCGGTATCGTACCAGGCAGCCAGGTTG
TTGTTGTCATTGGGTGGCGTCGGCATGGCGTCCAAGTCAAAGTTCAATGC
ACCGGCATCAATCTCGCCAACGTCCATGTCCATGGAATAGGGCGAAGTTG
GTGCGCCGCTAGGCGGAATGGCGCCGATGTTACCACCGCCGCCGCTAGCT
CCGCCTACAGCTCCACCATTGCCGGGAGCACCGCCAGCACCGCCGCCGCC
CACTGGGCTGCTGATCTCCAGACCCTGCATCGAATCTATTGGTAGAGTAT
CATATCCTTGCTGATGGAATGCGCGACCTCCGTGTGAACTGTGCACGCTG
GGCGGACCTTGTCCGTACAGGCCCTCATATGCTTCTTCTGGTCCAAGCAT
ATCCTGTAGATCGGGACCCATGCCCAGGTCGGCATTGGCCCATATGTTGT
TGTCCTCGCGCAGCAGCGAGTTGGTCAGCTCTATGGATAGCCGCTTCTTG
TAATCCTGCGGCTTGTCCTCACTCATGCGAAAGAGAACAGCGGCGGCGTA
TGTGGCCACGCCTTCATTGCGCGAGTGCAGGAGATCGGTCAGCGGCCCAG
TGGCGCCCTCCTGCTCGATAATCTCGGCGCCCTCCTTGTCAGCGGCGAGC
TCACAAAGAACGCCAGCAGCCACGCGCTGTATGTTCTCGATTTCGTTGAA
CAGCAATCGTACAAAGATCGGTATTACCGACTGCTGGCGAATGAGTGCCC
GGTTGTGAGACTCGCGGGCCAGGATATGTAGCGCCCCCACCGTGCCCTCG
ACAATCTCCTCCATGCGAACGCCGTCAGCGTATGCGGACGGCTG
BO03453.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:49:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11579-PA | 2532 | arm-RA | 1705..2529 | 844..20 | 4125 | 100 | Minus |
| CG11579-PD | 2532 | arm-RD | 1705..2529 | 844..20 | 4125 | 100 | Minus |
| CG11579-PB | 2532 | arm-RB | 1705..2529 | 844..20 | 4125 | 100 | Minus |
| CG11579-PE | 2532 | arm-RE | 1705..2529 | 844..20 | 4125 | 100 | Minus |
| CG11579-PC | 2166 | arm-RC | 1705..2151 | 844..398 | 2235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:16:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| arm-RF | 3211 | CG11579-RF | 1955..2783 | 844..16 | 4130 | 99.9 | Minus |
| arm-RE | 3116 | CG11579-RE | 1860..2688 | 844..16 | 4130 | 99.9 | Minus |
| arm-RB | 3220 | CG11579-RB | 1964..2792 | 844..16 | 4130 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:16:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1891829..1892121 | 16..308 | 1450 | 99.7 | Plus |
| X | 23542271 | X | 1894507..1894782 | 403..678 | 1380 | 100 | Plus |
| X | 23542271 | X | 1894841..1895008 | 677..844 | 840 | 100 | Plus |
| X | 23542271 | X | 1893402..1893503 | 306..407 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:16:33 has no hits.
BO03453.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:43:19 Download gff for
BO03453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm-PA | 1705..2532 | 17..844 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:47:21 Download gff for
BO03453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11579-PE | 1705..2532 | 17..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:45:12 Download gff for
BO03453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm-RB | 1964..2792 | 16..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:21:21 Download gff for
BO03453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm-RB | 1964..2792 | 16..844 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:21:21 Download gff for
BO03453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1894841..1895008 | 677..844 | 100 | | Plus |
| X | 1891829..1892119 | 16..306 | 99 | <- | Plus |
| X | 1893403..1893499 | 307..403 | 100 | <- | Plus |
| X | 1894508..1894780 | 404..676 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:45:12 Download gff for
BO03453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1785862..1786152 | 16..306 | 99 | <- | Plus |
| arm_X | 1787436..1787532 | 307..403 | 100 | <- | Plus |
| arm_X | 1788541..1788813 | 404..676 | 100 | <- | Plus |
| arm_X | 1788874..1789041 | 677..844 | 100 | | Plus |
BO03453.5prime Sequence
753 bp (694 high quality bases) assembled on 2005-11-30
> BO03453.5prime
GAAGTTATCAGTCGACATGAGTTACATGCCAGCCCAGAATCGAACCATGT
CGCATAATAATCAATACAATCCACCTGATCTGCCGCCGATGGTATCCGCC
AAGGAGCAGACCCTCATGTGGCAGCAGAATTCGTACTTGGGCGACTCCGG
CATCCACTCGGGTGCCGTGACCCAGGTTCCATCGCTGTCTGGCAAGGAGG
ACGAGGAGATGGAGGGAGATCCACTTATGTTCGACCTGGACACCGGTTTC
CCGCAGAATTTCACACAAGACCAAGTGGACGATATGAACCAGCAACTGAG
CCAGACACGCTCCCAACGTGTACGTGCTGCCATGTTTCCGGAAACCCTGG
AGGAGGGCATTGAGATTCCCTCCACCCAGTTTGATCCCCAACAGCCGACG
GCAGTGCAACGTCTTTCGGAACCGTCACAAATGCTAAAGCACGCGGTGGT
CAATCTGATCAACTACCAGGACGACGCTGAGCTGGCAACCAGGGCCATAC
CCGAGTTGATCAAGCTGCTGAACGATGAGGATCAGGTGGTAGTTTCCCAG
GCCGCCATGATGGTCCACCAGCTGTCTAAGAAGGAGGCCTCGCGACATGC
CATTATGAACAGCCCTCAGATGGTAGCCGCTTTGGTGCGTGCCATCTCTA
ACAGCAACGATCTGGAGAGCACCAAGGCAGCGGTAGGAACACTGCACAAC
TTATCACACCATCGCCAGGGTCTGCTGGCCATCTTCAAGAGTGGCGGCAT
CCC
BO03453.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:49:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11579-PC | 2166 | arm-RC | 1..737 | 17..753 | 3685 | 100 | Plus |
| CG11579-PA | 2532 | arm-RA | 1..737 | 17..753 | 3685 | 100 | Plus |
| CG11579-PD | 2532 | arm-RD | 1..737 | 17..753 | 3685 | 100 | Plus |
| CG11579-PB | 2532 | arm-RB | 1..737 | 17..753 | 3685 | 100 | Plus |
| CG11579-PE | 2532 | arm-RE | 1..737 | 17..753 | 3685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:17:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| arm-RF | 3211 | CG11579-RF | 251..987 | 17..753 | 3685 | 100 | Plus |
| arm-RE | 3116 | CG11579-RE | 156..892 | 17..753 | 3685 | 100 | Plus |
| arm-RB | 3220 | CG11579-RB | 260..996 | 17..753 | 3685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:17:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1896048..1896753 | 753..48 | 3530 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:17:54 has no hits.
BO03453.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:43:20 Download gff for
BO03453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm-PA | 1..737 | 17..753 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:47:23 Download gff for
BO03453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11579-PE | 1..737 | 17..753 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:51:36 Download gff for
BO03453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm-RB | 251..996 | 7..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:48:01 Download gff for
BO03453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm-RB | 251..996 | 7..753 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:48:01 Download gff for
BO03453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1896048..1896753 | 48..753 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:51:36 Download gff for
BO03453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1790081..1790786 | 48..753 | 100 | <- | Minus |
BO03453.complete Sequence
2564 bp assembled on 2011-06-28
> BO03453.complete
GAAGTTATCAGTCGACATGAGTTACATGCCAGCCCAGAATCGAACCATGT
CGCATAATAATCAATACAATCCACCTGATCTGCCGCCGATGGTATCCGCC
AAGGAGCAGACCCTCATGTGGCAGCAGAATTCGTACTTGGGCGACTCCGG
CATCCACTCGGGTGCCGTGACCCAGGTTCCATCGCTGTCTGGCAAGGAGG
ACGAGGAGATGGAGGGAGATCCACTTATGTTCGACCTGGACACCGGTTTC
CCGCAGAATTTCACACAAGACCAAGTGGACGATATGAACCAGCAACTGAG
CCAGACACGCTCCCAACGTGTACGTGCTGCCATGTTTCCGGAAACCCTGG
AGGAGGGCATTGAGATTCCCTCCACCCAGTTTGATCCCCAACAGCCGACG
GCAGTGCAACGTCTTTCGGAACCGTCACAAATGCTAAAGCACGCGGTGGT
CAATCTGATCAACTACCAGGACGACGCTGAGCTGGCAACCAGGGCCATAC
CCGAGTTGATCAAGCTGCTGAACGATGAGGATCAGGTGGTAGTTTCCCAG
GCCGCCATGATGGTCCACCAGCTGTCTAAGAAGGAGGCCTCGCGACATGC
CATTATGAACAGCCCTCAGATGGTAGCCGCTTTGGTGCGTGCCATCTCTA
ACAGCAACGATCTGGAGAGCACCAAGGCAGCGGTAGGAACACTGCACAAC
TTATCACACCATCGCCAGGGTCTGCTGGCCATCTTCAAGAGTGGCGGCAT
CCCGGCACTCGTCAAGTTGCTCTCCTCGCCAGTGGAGAGTGTGCTGTTCT
ATGCAATTACCACTCTGCACAATTTGCTGCTCCACCAGGATGGCTCTAAG
ATGGCTGTGCGCCTGGCCGGCGGGCTTCAGAAGATGGTTACTCTGCTGCA
ACGAAACAACGTTAAGTTTCTGGCTATCGTCACAGATTGCTTGCAAATTC
TGGCCTATGGTAACCAGGAGAGCAAGTTAATAATTCTTGCCTCCGGAGGG
CCCAACGAACTCGTGCGCATTATGCGCTCCTACGACTACGAGAAGCTTCT
GTGGACCACTTCGCGGGTACTGAAAGTGCTCTCCGTTTGCTCCAGCAACA
AGCCGGCCATCGTGGATGCCGGTGGAATGCAGGCGCTGGCTATGCACTTG
GGTAACATGTCACCGCGCCTTGTGCAAAACTGTTTGTGGACGCTCCGCAA
TCTTTCGGATGCAGCCACTAAGGTGGAGGGCCTTGAAGCTTTGCTCCAAT
CTCTCGTCCAGGTTCTGGGCTCGACCGATGTCAACGTGGTCACCTGTGCC
GCCGGTATCCTTTCAAATCTGACGTGCAACAATCAGCGCAACAAGGCCAC
CGTTTGTCAGGTGGGCGGTGTGGACGCCCTCGTCCGTACTATTATCAATG
CTGGAGATCGCGAAGAGATTACCGAGCCGGCTGTATGTGCCCTGCGTCAC
TTGACCTCGCGTCATGTGGACTCTGAGTTGGCCCAGAATGCCGTACGCTT
AAACTACGGACTATCGGTGATTGTAAAGCTATTGCATCCACCATCACGCT
GGCCCTTGATCAAGGCCGTCATTGGACTCATACGCAATTTGGCCCTCTGT
CCGGCCAATCACGCCCCGTTGCGGGAGCACGGGGCCATCCACCATCTGGT
GCGACTGCTTATGCGCGCCTTCCAAGACACAGAGAGGCAACGTTCCTCGA
TAGCCACCACTGGTTCACAGCAGCCGTCCGCATACGCTGACGGCGTTCGC
ATGGAGGAGATTGTCGAGGGCACGGTGGGGGCGCTACATATCCTGGCCCG
CGAGTCTCACAACCGGGCACTCATTCGCCAGCAGTCGGTAATACCGATCT
TTGTACGATTGCTGTTCAACGAAATCGAGAACATACAGCGCGTGGCTGCT
GGCGTTCTTTGTGAGCTCGCCGCTGACAAGGAGGGCGCCGAGATTATCGA
GCAGGAGGGCGCCACTGGGCCGCTGACCGATCTCCTGCACTCGCGCAATG
AAGGCGTGGCCACATACGCCGCCGCTGTTCTCTTTCGCATGAGTGAGGAC
AAGCCGCAGGATTACAAGAAGCGGCTATCCATAGAGCTGACCAACTCGCT
GCTGCGCGAGGACAACAACATATGGGCCAATGCCGACCTGGGCATGGGTC
CCGATCTACAGGATATGCTTGGACCAGAAGAAGCATATGAGGGCCTGTAC
GGACAAGGTCCGCCCAGCGTGCACAGTTCACACGGAGGTCGCGCATTCCA
TCAGCAAGGATATGATACTCTACCAATAGATTCGATGCAGGGTCTGGAGA
TCAGCAGCCCAGTGGGCGGCGGCGGTGCTGGCGGTGCTCCCGGCAATGGT
GGAGCTGTAGGCGGAGCTAGCGGCGGCGGTGGTAACATCGGCGCCATTCC
GCCTAGCGGCGCACCAACTTCGCCCTATTCCATGGACATGGACGTTGGCG
AGATTGATGCCGGTGCATTGAACTTTGACTTGGACGCCATGCCGACGCCA
CCCAATGACAACAACAACCTGGCTGCCTGGTACGATACCGATTGTAAGAA
GCTTTCTAGACCAT
BO03453.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:01:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| arm-RF | 2532 | CG11579-PF | 1..2529 | 17..2545 | 12645 | 100 | Plus |
| arm-RE | 2532 | CG11579-PE | 1..2529 | 17..2545 | 12645 | 100 | Plus |
| arm-RB | 2532 | CG11579-PB | 1..2529 | 17..2545 | 12645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| arm-RF | 3211 | CG11579-RF | 251..2783 | 17..2549 | 12650 | 100 | Plus |
| arm-RE | 3116 | CG11579-RE | 156..2688 | 17..2549 | 12650 | 100 | Plus |
| arm-RB | 3220 | CG11579-RB | 260..2792 | 17..2549 | 12650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1895114..1896753 | 1687..48 | 8200 | 100 | Minus |
| X | 23542271 | X | 1891829..1892121 | 2549..2257 | 1450 | 99.7 | Minus |
| X | 23542271 | X | 1894507..1894782 | 2162..1887 | 1380 | 100 | Minus |
| X | 23542271 | X | 1894841..1895042 | 1888..1687 | 1010 | 100 | Minus |
| X | 23542271 | X | 1893402..1893503 | 2259..2158 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:01:56 has no hits.
BO03453.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:15:55 Download gff for
BO03453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm-RB | 260..2791 | 17..2548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:39 Download gff for
BO03453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm-RB | 260..2791 | 17..2548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:39 Download gff for
BO03453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm-RB | 260..2791 | 17..2548 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:39 Download gff for
BO03453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1894841..1895041 | 1688..1888 | 100 | <- | Minus |
| X | 1891830..1892119 | 2259..2548 | 99 | <- | Minus |
| X | 1893403..1893499 | 2162..2258 | 100 | <- | Minus |
| X | 1894508..1894780 | 1889..2161 | 100 | <- | Minus |
| X | 1895114..1896753 | 48..1687 | 100 | <- | Minus |
| X | 1898980..1899010 | 17..47 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:39 Download gff for
BO03453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1785863..1786152 | 2259..2548 | 99 | <- | Minus |
| arm_X | 1787436..1787532 | 2162..2258 | 100 | <- | Minus |
| arm_X | 1788541..1788813 | 1889..2161 | 100 | <- | Minus |
| arm_X | 1788874..1789074 | 1688..1888 | 100 | <- | Minus |
| arm_X | 1789147..1790786 | 48..1687 | 100 | <- | Minus |
| arm_X | 1793013..1793043 | 17..47 | 100 | | Minus |
BO03453.pep Sequence
Translation from 16 to 2563
> BO03453.pep
MSYMPAQNRTMSHNNQYNPPDLPPMVSAKEQTLMWQQNSYLGDSGIHSGA
VTQVPSLSGKEDEEMEGDPLMFDLDTGFPQNFTQDQVDDMNQQLSQTRSQ
RVRAAMFPETLEEGIEIPSTQFDPQQPTAVQRLSEPSQMLKHAVVNLINY
QDDAELATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSP
QMVAALVRAISNSNDLESTKAAVGTLHNLSHHRQGLLAIFKSGGIPALVK
LLSSPVESVLFYAITTLHNLLLHQDGSKMAVRLAGGLQKMVTLLQRNNVK
FLAIVTDCLQILAYGNQESKLIILASGGPNELVRIMRSYDYEKLLWTTSR
VLKVLSVCSSNKPAIVDAGGMQALAMHLGNMSPRLVQNCLWTLRNLSDAA
TKVEGLEALLQSLVQVLGSTDVNVVTCAAGILSNLTCNNQRNKATVCQVG
GVDALVRTIINAGDREEITEPAVCALRHLTSRHVDSELAQNAVRLNYGLS
VIVKLLHPPSRWPLIKAVIGLIRNLALCPANHAPLREHGAIHHLVRLLMR
AFQDTERQRSSIATTGSQQPSAYADGVRMEEIVEGTVGALHILARESHNR
ALIRQQSVIPIFVRLLFNEIENIQRVAAGVLCELAADKEGAEIIEQEGAT
GPLTDLLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSIELTNSLLREDN
NIWANADLGMGPDLQDMLGPEEAYEGLYGQGPPSVHSSHGGRAFHQQGYD
TLPIDSMQGLEISSPVGGGGAGGAPGNGGAVGGASGGGGNIGAIPPSGAP
TSPYSMDMDVGEIDAGALNFDLDAMPTPPNDNNNLAAWYDTDCKKLSRP
BO03453.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:49:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| arm-PF | 843 | CG11579-PF | 1..843 | 1..843 | 4318 | 100 | Plus |
| arm-PE | 843 | CG11579-PE | 1..843 | 1..843 | 4318 | 100 | Plus |
| arm-PB | 843 | CG11579-PB | 1..843 | 1..843 | 4318 | 100 | Plus |
| arm-PD | 843 | CG11579-PD | 1..843 | 1..843 | 4318 | 100 | Plus |
| arm-PA | 843 | CG11579-PA | 1..843 | 1..843 | 4318 | 100 | Plus |
