Clone Sequence Records
BO03471.3prime Sequence
357 bp (356 high quality bases) assembled on 2005-11-30
> BO03471.3prime
ATGGTCTAGAAAGCTTTTTGTGGCCGTACTTCTGGAAATCCCACTCGCGG
TTGTCCAGTGGGCATACCTGGCGCGTCTTTAGCCAGCGAGAGATGCAGTG
GAAATGGAAGGCGTGGTTGCAGACGCCCCAGGCCACGGTGCACTCCTCGC
TAGTGGCGGACGCCTGGTTCGCCTGACACTCGATGCACAAGTCCATGATG
TGGTTGCGGCAGATGGCGCAGTTGTCCACCACGATGTCCCAGGCCCACAG
AGCCACGGCGTTCCACTTCTTCACCTCAAAGCGCTTCTTATCGCCCTTGC
TGCTGCTGGAGGGAACCTCGTATCCATCCTCGTCGACTTCCATGTCGACT
GATAACT
BO03471.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:49:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16982-PA | 327 | Roc1a-RA | 1..324 | 343..20 | 1620 | 100 | Minus |
CG16988-PA | 369 | Roc1b-RA | 160..219 | 229..170 | 175 | 91.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:16:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Roc1a-RD | 1145 | CG16982-RD | 144..473 | 344..15 | 1635 | 99.7 | Minus |
Roc1a-RA | 696 | CG16982-RA | 144..473 | 344..15 | 1635 | 99.7 | Minus |
Roc1a-RC | 1229 | CG16982-RC | 305..557 | 267..15 | 1250 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:16:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 647702..647925 | 238..15 | 1105 | 99.6 | Minus |
3L | 28110227 | 3L | 358134..358394 | 285..22 | 430 | 78.4 | Minus |
X | 23542271 | X | 647447..647525 | 344..266 | 395 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 02:16:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbif\P-element_O | 2986 | Dbif\P-element_O P_O 2986bp Derived from X71634. | 2227..2273 | 239..195 | 104 | 72.3 | Minus |
BO03471.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:43:33 Download gff for
BO03471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roc1a-PA | 1..327 | 17..343 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:47:42 Download gff for
BO03471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16982-PA | 1..327 | 17..343 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:45:16 Download gff for
BO03471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roc1a-RA | 139..476 | 12..348 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:23:03 Download gff for
BO03471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roc1a-RA | 139..476 | 12..348 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:23:03 Download gff for
BO03471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 647442..647525 | 266..348 | 97 | -> | Minus |
X | 647610..647637 | 238..265 | 100 | -> | Minus |
X | 647703..647928 | 12..237 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:45:16 Download gff for
BO03471.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 541475..541558 | 266..348 | 97 | -> | Minus |
arm_X | 541643..541670 | 238..265 | 100 | -> | Minus |
arm_X | 541736..541961 | 12..237 | 99 | | Minus |
BO03471.5prime Sequence
357 bp (356 high quality bases) assembled on 2005-11-30
> BO03471.5prime
GAAGTTATCAGTCGACATGGAAGTCGACGAGGATGGATACGAGGTTCCCT
CCAGCAGCAGCAAGGGCGATAAGAAGCGCTTTGAGGTGAAGAAGTGGAAC
GCCGTGGCTCTGTGGGCCTGGGACATCGTGGTGGACAACTGCGCCATCTG
CCGCAACCACATCATGGACTTGTGCATCGAGTGTCAGGCGAACCAGGCGT
CCGCCACTAGCGAGGAGTGCACCGTGGCCTGGGGCGTCTGCAACCACGCC
TTCCATTTCCACTGCATCTCTCGCTGGCTAAAGACGCGCCAGGTATGCCC
ACTGGACAACCGCGAGTGGGATTTCCAGAAGTACGGCCACAAAAAGCTTT
CTAGACC
BO03471.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:49:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16982-PA | 327 | Roc1a-RA | 1..324 | 17..340 | 1620 | 100 | Plus |
CG16988-PA | 369 | Roc1b-RA | 160..219 | 131..190 | 175 | 91.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:54:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Roc1a-RD | 1145 | CG16982-RD | 144..473 | 16..345 | 1635 | 99.7 | Plus |
Roc1a-RA | 696 | CG16982-RA | 144..473 | 16..345 | 1635 | 99.7 | Plus |
Roc1a-RC | 1229 | CG16982-RC | 305..557 | 93..345 | 1250 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:54:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 647702..647925 | 122..345 | 1105 | 99.6 | Plus |
3L | 28110227 | 3L | 358134..358394 | 75..338 | 430 | 78.4 | Plus |
X | 23542271 | X | 647447..647525 | 16..94 | 395 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 00:54:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbif\P-element_O | 2986 | Dbif\P-element_O P_O 2986bp Derived from X71634. | 2227..2273 | 121..165 | 104 | 72.3 | Plus |
BO03471.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:43:34 Download gff for
BO03471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roc1a-PA | 1..327 | 17..343 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:47:44 Download gff for
BO03471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16982-PA | 1..327 | 17..343 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:35:00 Download gff for
BO03471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roc1a-RA | 139..476 | 12..348 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:28:29 Download gff for
BO03471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roc1a-RA | 139..476 | 12..348 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:28:29 Download gff for
BO03471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 647703..647928 | 123..348 | 99 | | Plus |
X | 647442..647525 | 12..94 | 97 | -> | Plus |
X | 647610..647637 | 95..122 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:35:00 Download gff for
BO03471.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 541475..541558 | 12..94 | 97 | -> | Plus |
arm_X | 541643..541670 | 95..122 | 100 | -> | Plus |
arm_X | 541736..541961 | 123..348 | 99 | | Plus |
BO03471.complete Sequence
359 bp assembled on 2011-06-28
> BO03471.complete
GAAGTTATCAGTCGACATGGAAGTCGACGAGGATGGATACGAGGTTCCCT
CCAGCAGCAGCAAGGGCGATAAGAAGCGCTTTGAGGTGAAGAAGTGGAAC
GCCGTGGCTCTGTGGGCCTGGGACATCGTGGTGGACAACTGCGCCATCTG
CCGCAACCACATCATGGACTTGTGCATCGAGTGTCAGGCGAACCAGGCGT
CCGCCACTAGCGAGGAGTGCACCGTGGCCTGGGGCGTCTGCAACCACGCC
TTCCATTTCCACTGCATCTCTCGCTGGCTAAAGACGCGCCAGGTATGCCC
ACTGGACAACCGCGAGTGGGATTTCCAGAAGTACGGCCACAAAAAGCTTT
CTAGACCAT
BO03471.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:02:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Roc1a-RD | 327 | CG16982-PD | 1..324 | 17..340 | 1620 | 100 | Plus |
Roc1a-RA | 327 | CG16982-PA | 1..324 | 17..340 | 1620 | 100 | Plus |
Roc1a-RC | 411 | CG16982-PC | 161..408 | 93..340 | 1240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Roc1a-RD | 1145 | CG16982-RD | 144..473 | 16..345 | 1635 | 99.7 | Plus |
Roc1a-RA | 696 | CG16982-RA | 144..473 | 16..345 | 1635 | 99.7 | Plus |
Roc1a-RC | 1229 | CG16982-RC | 305..557 | 93..345 | 1250 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 647702..647925 | 122..345 | 1105 | 99.6 | Plus |
3L | 28110227 | 3L | 358134..358394 | 75..338 | 430 | 78.4 | Plus |
X | 23542271 | X | 647447..647525 | 16..94 | 395 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:02:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbif\P-element_O | 2986 | Dbif\P-element_O P_O 2986bp Derived from X71634. | 2227..2273 | 121..165 | 104 | 72.3 | Plus |
BO03471.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:15:56 Download gff for
BO03471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roc1a-RA | 162..485 | 17..340 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:50:44 Download gff for
BO03471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roc1a-RA | 145..468 | 17..340 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:45 Download gff for
BO03471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Roc1a-RA | 145..468 | 17..340 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:45 Download gff for
BO03471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 647610..647637 | 95..122 | 100 | -> | Plus |
X | 647703..647920 | 123..340 | 100 | | Plus |
X | 647448..647525 | 17..94 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:50:44 Download gff for
BO03471.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 541481..541558 | 17..94 | 100 | -> | Plus |
arm_X | 541643..541670 | 95..122 | 100 | -> | Plus |
arm_X | 541736..541953 | 123..340 | 100 | | Plus |
BO03471.pep Sequence
Translation from 16 to 358
> BO03471.pep
MEVDEDGYEVPSSSSKGDKKRFEVKKWNAVALWAWDIVVDNCAICRNHIM
DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE
WDFQKYGHKKLSRP
BO03471.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:51:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Roc1a-PD | 108 | CG16982-PD | 1..108 | 1..108 | 619 | 100 | Plus |
Roc1a-PA | 108 | CG16982-PA | 1..108 | 1..108 | 619 | 100 | Plus |
Roc1a-PC | 136 | CG16982-PC | 1..136 | 1..108 | 580 | 79.4 | Plus |
Roc1b-PA | 122 | CG16988-PA | 21..121 | 9..107 | 395 | 67.6 | Plus |
Roc2-PB | 113 | CG8998-PB | 6..112 | 5..107 | 274 | 43.9 | Plus |