Clone Sequence Records
BO03472.3prime Sequence
866 bp (752 high quality bases) assembled on 2005-11-30
> BO03472.3prime
ATGGTCTAGAAAGCTTTTTCATATGCGGAGTGCCGCAGACCACGGATCGC
TGCTGTTGCGCCGTCCCCGCTCCGCTGCCCGCTACCGAAGCTGCAGCCAT
TAGTTGGGATGAACAGGCTCCGGCCACTCCCGCCGCCGCCAACGAGGGCC
AACGCTGGCTACAGTAGGAACCCTCGCCTAAAACAGAGATCCTCTTGCCC
TCCGCCGCTCCCGGTCCTCCGCCAGACGCTCCCTTGGCTGAGCTGCCTGC
CGGCGAACCGCGGTGCATGAGCGTGGGATCGGTGTTGAGTTGCTTTTGCG
ACTTGGCTCTTTGTAGCGGAGCCACACAAAAGTCTGAGTTGGCATTGTTG
TTATCCGCCACCGAGGCCACATATCCGCCGTACATGAGACACTCGTCCGC
CGCTGCTGCCGCCGCCGCCGCTGCTGCTGCTGAGGCACAAATGTTGTTGA
CCGACTTGTCCCAGGTGTTTTTGATGATATTCGGGTTGCCGCCATCGAAG
GTGAGACCGCTGTTGCTGCCAGTTTTGCCGCCCAGAGAGGCTGAAGCCAA
AGCTACACCCACCCCACTGCCATTGTGATGCATTGTGGCCACCGCATTCT
GTTCGTTCTGCTTCCTGGCCTCCGCGTCGTCCTTTTCCTGAGCACGCTTA
CGCTTGCGCTTCATGCAGAAGACCACGCACGCCGCAATAACCGCCACCAA
AGGCATCGCAACGGAGAAAACAGCAATTAGGACTACCTGGGCATTGGTCA
ACCATCGGCTCTCGCTTGTGTGGTTGCTCCATATTGGTGGGCATCGAAGG
TCACCGAATCGTAGGACTCCTCATCGCACTGCTTGCCCCCTGAACCATTG
GCACACACGCATCCAA
BO03472.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:49:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3619-PA | 2502 | Dl-RA | 1768..2499 | 751..20 | 3660 | 100 | Minus |
CG3619-PB | 2502 | Dl-RB | 1768..2499 | 751..20 | 3660 | 100 | Minus |
CG3619-PA | 2502 | Dl-RA | 1679..1768 | 839..750 | 450 | 100 | Minus |
CG3619-PB | 2502 | Dl-RB | 1679..1768 | 839..750 | 450 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:27:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dl-RC | 4581 | CG3619-RC | 2335..3178 | 862..20 | 4150 | 99.6 | Minus |
Dl-RB | 3546 | CG3619-RB | 2335..3178 | 862..20 | 4150 | 99.6 | Minus |
Dl-RA | 5278 | CG3619-RA | 2335..3178 | 862..20 | 4150 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:27:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19304831..19305674 | 20..862 | 4125 | 99.5 | Plus |
Blast to na_te.dros performed 2015-02-10 16:27:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2360..2484 | 531..402 | 116 | 56.9 | Minus |
BO03472.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:43:35 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:47:46 Download gff for
BO03472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3619-PB | 1654..2502 | 17..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:37:49 Download gff for
BO03472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dl-RA | 2333..3183 | 12..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:22:31 Download gff for
BO03472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dl-RA | 2333..3183 | 12..864 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:22:31 Download gff for
BO03472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19304826..19305676 | 12..864 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:37:49 Download gff for
BO03472.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15130548..15131398 | 12..864 | 99 | | Plus |
BO03472.5prime Sequence
828 bp (712 high quality bases) assembled on 2005-11-30
> BO03472.5prime
GAAGTTATCAGTCGACATGCATTGGATTAAATGTTTATTAACAGCATTCA
TTTGCTTCACAGTCATCGTGCAGGTTCACAGTTCCGGCAGCTTTGAGTTG
CGCCTGAAGTACTTCAGCAACGATCACGGGCGGGACAACGAGGGTCGCTG
CTGCAGCGGGGAGTCGGACGGAGCGACGGGCAAGTGCCTGGGCAGCTGCA
AGACGCGGTTTCGCGTCTGCCTAAAGCACTACCAGGCCACCATCGACACC
ACCTCCCAGTGCACCTACGGGGACGTGATCACGCCCATTCTCGGCGAGAA
CTCGGTCAATCTGACCGACGCCCAGCGCTTCCAGAACAAGGGCTTCACGA
ATCCCATCCAGTTCCCCTTCTCGTTCTCATGGCCGGGTACCTTCTCGCTG
ATCGTCGAGGCCTGGCATGATACGAACAACAGCGGCAATGCGCGCACCAA
CAAGCTCCTCATCCAGCGACTCTTGGTGCAGCAGGTACTGGAAGTGTCCT
CCGAATGGAAGACGAACAAGTCGGAATCGCAGTACACGTCGCTGGAGTAC
GATTTCCGTGTCACCTGCGATCTCAACTACTACGGATCCGGCTGTGCCAA
GTTCTGCCGGCCCCGCGACGATTCATTTGGACACTCGACTTGCTCGGAGA
CGGGCGAAATTATCTGTTTGACCGGATGGCAGGGCGATTACTGTCACATA
CCCAAATGCGCCAAAAGCTGTGAACATGGACATTGCGACAAGCCCAATCA
ATGCGTTTGCCAACTGGGCTGGAAGGGAGCCTTGTGCAACAAGTGCGTTC
TGGAACCGAACTGCATCCCTGGCACCTG
BO03472.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:49:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3619-PA | 2502 | Dl-RA | 1..812 | 17..828 | 3985 | 99.6 | Plus |
CG3619-PB | 2502 | Dl-RB | 1..812 | 17..828 | 3985 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:09:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dl-RC | 4581 | CG3619-RC | 678..1491 | 15..828 | 4025 | 99.6 | Plus |
Dl-RB | 3546 | CG3619-RB | 678..1491 | 15..828 | 4025 | 99.6 | Plus |
Dl-RA | 5278 | CG3619-RA | 678..1491 | 15..828 | 4025 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:09:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19319817..19320134 | 386..69 | 1590 | 100 | Minus |
3R | 32079331 | 3R | 19311816..19312064 | 701..453 | 1245 | 100 | Minus |
3R | 32079331 | 3R | 19316006..19316073 | 452..385 | 340 | 100 | Minus |
3R | 32079331 | 3R | 19306518..19306589 | 828..757 | 330 | 97.2 | Minus |
3R | 32079331 | 3R | 19325480..19325540 | 75..15 | 305 | 100 | Minus |
3R | 32079331 | 3R | 19308707..19308761 | 756..702 | 260 | 98.2 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:09:09 has no hits.
BO03472.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:43:36 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:47:47 Download gff for
BO03472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3619-PB | 1..812 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:14:02 Download gff for
BO03472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dl-RA | 670..1491 | 7..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:29:05 Download gff for
BO03472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dl-RA | 670..1491 | 7..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:29:05 Download gff for
BO03472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19306518..19306589 | 757..828 | 97 | <- | Minus |
3R | 19308707..19308761 | 702..756 | 98 | <- | Minus |
3R | 19311816..19312064 | 453..701 | 100 | <- | Minus |
3R | 19316006..19316072 | 386..452 | 100 | <- | Minus |
3R | 19319818..19320129 | 74..385 | 100 | <- | Minus |
3R | 19325482..19325548 | 7..73 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:14:02 Download gff for
BO03472.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15132240..15132311 | 757..828 | 97 | <- | Minus |
arm_3R | 15134429..15134483 | 702..756 | 98 | <- | Minus |
arm_3R | 15137538..15137786 | 453..701 | 100 | <- | Minus |
arm_3R | 15141728..15141794 | 386..452 | 100 | <- | Minus |
arm_3R | 15145540..15145851 | 74..385 | 100 | <- | Minus |
arm_3R | 15151204..15151270 | 7..73 | 95 | | Minus |
BO03472.complete Sequence
2534 bp assembled on 2011-06-28
> BO03472.complete
GAAGTTATCAGTCGACATGCATTGGATTAAATGTTTATTAACAGCATTCA
TTTGCTTCACAGTCATCGTGCAGGTTCACAGTTCCGGCAGCTTTGAGTTG
CGCCTGAAGTACTTCAGCAACGATCACGGGCGGGACAACGAGGGTCGCTG
CTGCAGCGGGGAGTCGGACGGAGCGACGGGCAAGTGCCTGGGCAGCTGCA
AGACGCGGTTTCGCGTCTGCCTAAAGCACTACCAGGCCACCATCGACACC
ACCTCCCAGTGCACCTACGGGGACGTGATCACGCCCATTCTCGGCGAGAA
CTCGGTCAATCTGACCGACGCCCAGCGCTTCCAGAACAAGGGCTTCACGA
ATCCCATCCAGTTCCCCTTCTCGTTCTCATGGCCGGGTACCTTCTCGCTG
ATCGTCGAGGCCTGGCATGATACGAACAACAGCGGCAATGCGCGCACCAA
CAAGCTCCTCATCCAGCGACTCTTGGTGCAGCAGGTACTGGAAGTGTCCT
CCGAATGGAAGACGAACAAGTCGGAATCGCAGTACACGTCGCTGGAGTAC
GATTTCCGTGTCACCTGCGATCTCAACTACTACGGATCCGGCTGTGCCAA
GTTCTGCCGGCCCCGCGACGATTCATTTGGACACTCGACTTGCTCGGAGA
CGGGCGAAATTATCTGTTTGACCGGATGGCAGGGCGATTACTGTCACATA
CCCAAATGCGCCAAAGGCTGTGAACATGGACATTGCGACAAGCCCAATCA
ATGCGTTTGCCAACTGGGCTGGAAGGGAGCCTTGTGCAACGAGTGCGTTC
TGGAACCGAACTGCATCCATGGCACCTGCAACAAACCCTGGACTTGCATC
TGCAACGAGGGTTGGGGAGGCTTGTACTGCAACCAGGATCTGAACTACTG
CACCAACCACAGACCCTGCAAGAATGGCGGAACCTGCTTCAACACCGGCG
AGGGATTGTACACATGCAAATGCGCTCCAGGATACAGTGGTGATGATTGC
GAAAATGAGATCTACTCCTGCGATGCCGATGTCAATCCCTGCCAGAATGG
TGGTACCTGCATCGATGAGCCGCACACAAAAACCGGCTACAAGTGTCATT
GCGCCAACGGCTGGAGCGGAAAGATGTGCGAGGAGAAAGTGCTCACGTGT
TCGGACAAACCCTGTCATCAGGGAATCTGCCGCAACGTTCGTCCTGGTTT
GGGAAGCAAGGGTCAGGGCTACCAGTGCGAATGTCCCATTGGCTACAGCG
GACCCAACTGCGATCTCCAGCTGGACAACTGCAGTCCGAATCCCTGCATT
AACGGTGGAAGCTGTCAGCCGAGCGGAAAGTGTATTTGCCCAGCGGGATT
TTCGGGAACGAGATGCGAGACCAACATTGACGATTGTCTTGGCCACCAGT
GCGAGAACGGAGGCACCTGCATAGATATGGTCAACCAATATCGCTGCCAA
TGCGTTCCCGGTTTCCATGGCACCCACTGTAGTAGCAAAGTTGACTTGTG
CCTCATCAGACCGTGTGCCAATGGAGGAACCTGCTTGAATCTCAACAACG
ATTACCAGTGCACCTGTCGTGCGGGATTTACTGGCAAGGATTGCTCCGTG
GACATCGATGAGTGCAGCAGTGGACCCTGTCATAACGGCGGCACCTGCAT
GAACCGTGTCAATTCGTTCGAATGCGTGTGTGCCAATGGTTTCAGGGGCA
AGCAGTGCGATGAGGAGTCCTACGATTCGGTGACCTTCGATGCCCACCAA
TATGGAGCAACCACACAAGCGAGAGCCGATGGTTTGACCAATGCCCAGGT
AGTCCTAATTGCTGTTTTCTCCGTTGCGATGCCTTTGGTGGCGGTTATTG
CGGCGTGCGTGGTCTTCTGCATGAAGCGCAAGCGTAAGCGTGCTCAGGAA
AAGGACGACGCGGAGGCCAGGAAGCAGAACGAACAGAATGCGGTGGCCAC
AATGCATCACAATGGCAGTGGGGTGGGTGTAGCTTTGGCTTCAGCCTCTC
TGGGCGGCAAAACTGGCAGCAACAGCGGTCTCACCTTCGATGGCGGCAAC
CCGAATATCATCAAAAACACCTGGGACAAGTCGGTCAACAACATTTGTGC
CTCAGCAGCAGCAGCGGCGGCGGCGGCAGCAGCGGCGGACGAGTGTCTCA
TGTACGGCGGATATGTGGCCTCGGTGGCGGATAACAACAATGCCAACTCA
GACTTTTGTGTGGCTCCGCTACAAAGAGCCAAGTCGCAAAAGCAACTCAA
CACCGATCCCACGCTCATGCACCGCGGTTCGCCGGCAGGCAGCTCAGCCA
AGGGAGCGTCTGGCGGAGGACCGGGAGCGGCGGAGGGCAAGAGGATCTCT
GTTTTAGGCGAGGGTTCCTACTGTAGCCAGCGTTGGCCCTCGTTGGCGGC
GGCGGGAGTGGCCGGAGCCTGTTCATCCCAACTAATGGCTGCAGCTTCGG
TAGCGGGCAGCGGAGCGGGGACGGCGCAACAGCAGCGATCCGTGGTCTGC
GGCACTCCGCATATGAAAAAGCTTTCTAGACCAT
BO03472.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:02:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dl-RC | 2502 | CG3619-PC | 1..2499 | 17..2515 | 12495 | 100 | Plus |
Dl-RB | 2502 | CG3619-PB | 1..2499 | 17..2515 | 12495 | 100 | Plus |
Dl-RA | 2502 | CG3619-PA | 1..2499 | 17..2515 | 12495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dl-RC | 4581 | CG3619-RC | 678..3178 | 15..2515 | 12505 | 100 | Plus |
Dl-RB | 3546 | CG3619-RB | 678..3178 | 15..2515 | 12505 | 100 | Plus |
Dl-RA | 5278 | CG3619-RA | 678..3178 | 15..2515 | 12505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19304831..19306589 | 2515..757 | 8795 | 100 | Minus |
3R | 32079331 | 3R | 19319817..19320134 | 386..69 | 1590 | 100 | Minus |
3R | 32079331 | 3R | 19311816..19312064 | 701..453 | 1245 | 100 | Minus |
3R | 32079331 | 3R | 19316006..19316073 | 452..385 | 340 | 100 | Minus |
3R | 32079331 | 3R | 19325480..19325540 | 75..15 | 305 | 100 | Minus |
3R | 32079331 | 3R | 19308707..19308761 | 756..702 | 275 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 16:02:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2360..2484 | 2004..2133 | 116 | 56.9 | Plus |
BO03472.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:15:57 Download gff for
BO03472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dl-RC | 676..3174 | 17..2515 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:51:00 Download gff for
BO03472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dl-RA | 680..3178 | 17..2515 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:09:55 Download gff for
BO03472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dl-RA | 680..3178 | 17..2515 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:09:55 Download gff for
BO03472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19325482..19325538 | 17..73 | 100 | | Minus |
3R | 19304831..19306589 | 757..2515 | 100 | <- | Minus |
3R | 19308707..19308761 | 702..756 | 100 | <- | Minus |
3R | 19311816..19312064 | 453..701 | 100 | <- | Minus |
3R | 19316006..19316072 | 386..452 | 100 | <- | Minus |
3R | 19319818..19320129 | 74..385 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:51:00 Download gff for
BO03472.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15141728..15141794 | 386..452 | 100 | <- | Minus |
arm_3R | 15130553..15132311 | 757..2515 | 100 | <- | Minus |
arm_3R | 15134429..15134483 | 702..756 | 100 | <- | Minus |
arm_3R | 15137538..15137786 | 453..701 | 100 | <- | Minus |
arm_3R | 15145540..15145851 | 74..385 | 100 | <- | Minus |
arm_3R | 15151204..15151260 | 17..73 | 100 | | Minus |
BO03472.pep Sequence
Translation from 16 to 2533
> BO03472.pep
MHWIKCLLTAFICFTVIVQVHSSGSFELRLKYFSNDHGRDNEGRCCSGES
DGATGKCLGSCKTRFRVCLKHYQATIDTTSQCTYGDVITPILGENSVNLT
DAQRFQNKGFTNPIQFPFSFSWPGTFSLIVEAWHDTNNSGNARTNKLLIQ
RLLVQQVLEVSSEWKTNKSESQYTSLEYDFRVTCDLNYYGSGCAKFCRPR
DDSFGHSTCSETGEIICLTGWQGDYCHIPKCAKGCEHGHCDKPNQCVCQL
GWKGALCNECVLEPNCIHGTCNKPWTCICNEGWGGLYCNQDLNYCTNHRP
CKNGGTCFNTGEGLYTCKCAPGYSGDDCENEIYSCDADVNPCQNGGTCID
EPHTKTGYKCHCANGWSGKMCEEKVLTCSDKPCHQGICRNVRPGLGSKGQ
GYQCECPIGYSGPNCDLQLDNCSPNPCINGGSCQPSGKCICPAGFSGTRC
ETNIDDCLGHQCENGGTCIDMVNQYRCQCVPGFHGTHCSSKVDLCLIRPC
ANGGTCLNLNNDYQCTCRAGFTGKDCSVDIDECSSGPCHNGGTCMNRVNS
FECVCANGFRGKQCDEESYDSVTFDAHQYGATTQARADGLTNAQVVLIAV
FSVAMPLVAVIAACVVFCMKRKRKRAQEKDDAEARKQNEQNAVATMHHNG
SGVGVALASASLGGKTGSNSGLTFDGGNPNIIKNTWDKSVNNICASAAAA
AAAAAAADECLMYGGYVASVADNNNANSDFCVAPLQRAKSQKQLNTDPTL
MHRGSPAGSSAKGASGGGPGAAEGKRISVLGEGSYCSQRWPSLAAAGVAG
ACSSQLMAAASVAGSGAGTAQQQRSVVCGTPHMKKLSRP
BO03472.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:50:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dl-PC | 833 | CG3619-PC | 1..833 | 1..833 | 4681 | 100 | Plus |
Dl-PB | 833 | CG3619-PB | 1..833 | 1..833 | 4681 | 100 | Plus |
Dl-PA | 833 | CG3619-PA | 1..833 | 1..833 | 4681 | 100 | Plus |
Ser-PB | 1407 | CG6127-PB | 66..684 | 6..566 | 1076 | 34.4 | Plus |
Ser-PA | 1407 | CG6127-PA | 66..684 | 6..566 | 1076 | 34.4 | Plus |
Ser-PB | 1407 | CG6127-PB | 478..952 | 217..565 | 633 | 31.2 | Plus |
Ser-PB | 1407 | CG6127-PB | 474..837 | 275..568 | 449 | 28.1 | Plus |
Ser-PB | 1407 | CG6127-PB | 239..417 | 405..595 | 189 | 27.3 | Plus |