Clone BO03548 Report

Search the DGRC for BO03548

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:35
Well:48
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:
Sequenced Size:2300

Clone Sequence Records

BO03548.3prime Sequence

787 bp (716 high quality bases) assembled on 2005-11-30

> BO03548.3prime
ATGGTCTAGAAAGCTTCTTTAAAACGAAAATTGAAGGATTATAAGATATT
TCCACAGCTTTCACATTGAACTCACTGTGTTCAATTTCAAGGCCGAACAA
CTTAATTTTGTTGGCCTCGTGCTGCGCCTTCTTCTTCAGGCGACAGGCGC
GTGAGGCCAGCTTGTTCTTCTCCTTGCGCGACTTGGGGCGCACATTGAAT
GGCAGCTCGGAAACAGGAGTCATGTCATTGATGGTGCGGCTTAGCTTGTC
CAGTTCCTTGCCAATATTGTGCAGCTTCCTGGCATTGGGAGTTAAATCGT
TACCATCGCCCTTGCGGGCCTTGCCACTGTGCTTGTACACCTTAATGCCT
CGCACGGAGCACGTTGGACTGAAGACGGGGTCTGTCACCTCGTTCAGCAC
ATGAGGATCCTCGAGCTTCGATTGAAAGACCAGTCTCTTTCCCTTGGGTC
CTTTGGCCTGAACATTGTACTGCCAGAAAAATCGCTCTTTGCCCTTGCTA
CTGGACAAATGGTTTGGTGTCGAGGTACGCGTTTCATCTTCATCCTCAGA
GAGTCCATTGTCGCTGCTACAATCGTCGTAGTTATCGCTATTCTCACTCG
AATTGTCATCCTCATCGTCCTGCGAGAAGTCAATGCCATCCGGGGACAAG
ACACTGCCCGTGCTCAGTGAAGAGAAGCTCTCGGCCTCGGCCAGCGAGCC
GGTGGAGAGTAAATGCTGTCGTGGCTCCCGCCGCATCCAGAATGTGCTCC
AATCCCCAGTGCGTCGGAGCCGACCAGCTGAGGCAAC

BO03548.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:50:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG13624-PB 2268 CG13624-RB 1544..2265 741..20 3610 100 Minus
CG13624-PD 2268 CG13624-RD 1544..2265 741..20 3610 100 Minus
CG13624-PA 2268 CG13624-RA 1544..2265 741..20 3610 100 Minus
CG13624-PC 2268 CG13624-RC 1544..2265 741..20 3610 100 Minus
CG13624-PE 2445 CG13624-RE 1544..2209 741..76 3330 100 Minus
CG13624-PF 2445 CG13624-RF 1544..2209 741..76 3330 100 Minus
CG13624-PB 2268 CG13624-RB 1502..1544 784..742 165 95.3 Minus
CG13624-PD 2268 CG13624-RD 1502..1544 784..742 165 95.3 Minus
CG13624-PA 2268 CG13624-RA 1502..1544 784..742 165 95.3 Minus
CG13624-PC 2268 CG13624-RC 1502..1544 784..742 165 95.3 Minus
CG13624-PE 2445 CG13624-RE 1502..1544 784..742 165 95.3 Minus
CG13624-PF 2445 CG13624-RF 1502..1544 784..742 165 95.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13624-RG 3698 CG13624-RG 2277..3044 784..16 3775 99.5 Minus
CG13624-RC 4228 CG13624-RC 2807..3574 784..16 3775 99.5 Minus
CG13624-RA 3864 CG13624-RA 1934..2701 784..16 3775 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24560890..24561341 332..784 2185 99.3 Plus
3R 32079331 3R 24560507..24560824 16..333 1575 99.7 Plus
Blast to na_te.dros performed 2015-02-12 10:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
transib1 2167 transib1 TRANSIB1 2167bp 540..625 614..526 112 62.9 Minus

BO03548.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:44:31 Download gff for BO03548.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13624-PA 1499..2268 17..787 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:49:04 Download gff for BO03548.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13624-PC 1499..2268 17..787 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:50:33 Download gff for BO03548.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13624-RD 1751..2527 8..787 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:12:44 Download gff for BO03548.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13624-RA 1931..2707 8..787 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:12:44 Download gff for BO03548.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24560501..24560822 8..331 98 <- Plus
3R 24560890..24561344 332..787 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:50:33 Download gff for BO03548.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20386223..20386544 8..331 98 <- Plus
arm_3R 20386612..20387066 332..787 99   Plus

BO03548.5prime Sequence

778 bp (662 high quality bases) assembled on 2005-11-30

> BO03548.5prime
GAAGTTATCAGTCGACATGACAGAGAATCAGCTGTATCCCATGTCATCGG
AGTTCTTTGACACCGGCTCGAACAGCAGCAGCAACACACTTAAATACGAT
CTGTATTCCCTGGGCTCCACCGTTGTGGGGGCGGCGCTGCCCACGTTGAC
GATCAACACGGGCTACGGCAGCAGCAGCAGCAACAATAACAACACTAATA
ACAACAATAACAACAGCAGTAGTCACAGCAGCAGCAGCAACTGCTCCACC
AGCACCACAAATACCTGTAATGTAATGCTAAGTACAACGGCCATAACAAT
ACCACGCAGCAGCAACCACAACCAGATCCATCATCATCCGTATCAGCAGT
CCGATTTGCAGACACCGCGCCATCATCCCAGTCCTCTACACACGTTGCCC
AGCATGACCCATCAGCAAAATCAGCTTCAGCAGCAGCAGCAGCAGCAACA
CCACAACCAACAGCAGCAGCTGCAGCAATCGCATTTGGCACTGGGAGAGC
TTTCAGACTTTGGACTAGATGCACTGGATGCCGCTTCGCTATCGCCCACT
CTGCTGCAGGATGTGAGCCTGAGTGCTGTTTCTCCTCTAAGCACCACACT
CTACAATGGCAACACCAGTGGAGCAGGCAGCAGCAACGGAATAGGATCCG
GCAGTGGTGGCTACTTCACGCCCGACATGTCGCACAGCCTCAGCCTGAAT
GTGGTCAGTGAGCAGGTTCTGCTGCAGGAAGCCACAACCCCAAATGAGTT
GCTCTACGAGATGACCCCCAACTCGAAT

BO03548.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:50:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG13624-PB 2268 CG13624-RB 1..762 17..778 3760 99.7 Plus
CG13624-PD 2268 CG13624-RD 1..762 17..778 3760 99.7 Plus
CG13624-PA 2268 CG13624-RA 1..762 17..778 3760 99.7 Plus
CG13624-PC 2268 CG13624-RC 1..762 17..778 3760 99.7 Plus
CG13624-PE 2445 CG13624-RE 1..762 17..778 3760 99.7 Plus
CG13624-PF 2445 CG13624-RF 1..762 17..778 3760 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG13624-RG 3698 CG13624-RG 776..1537 17..778 3780 99.7 Plus
CG13624-RF 3805 CG13624-RF 433..1194 17..778 3780 99.7 Plus
CG13624-RE 3680 CG13624-RE 308..1069 17..778 3780 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:17:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24562081..24562842 778..17 3780 99.7 Minus
Blast to na_te.dros performed 2015-02-11 02:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2335..2671 152..483 377 60.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..7186 156..632 351 56.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..7086 169..477 334 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2319..2641 169..477 330 60.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6714..7004 188..470 255 57.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2543 190..454 236 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6714..6952 209..445 234 58.1 Plus
roo 9092 roo DM_ROO 9092bp 1049..1160 218..328 152 63.2 Plus

BO03548.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:44:32 Download gff for BO03548.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13624-PA 1..762 17..778 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:49:05 Download gff for BO03548.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13624-PF 1..762 17..778 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:45:24 Download gff for BO03548.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13624-RC 1306..2067 17..778 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:24:41 Download gff for BO03548.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13624-RE 308..1069 17..778 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:24:41 Download gff for BO03548.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24562081..24562842 17..778 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:45:24 Download gff for BO03548.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20387803..20388564 17..778 99   Minus