BO03548.3prime Sequence
787 bp (716 high quality bases) assembled on 2005-11-30
> BO03548.3prime
ATGGTCTAGAAAGCTTCTTTAAAACGAAAATTGAAGGATTATAAGATATT
TCCACAGCTTTCACATTGAACTCACTGTGTTCAATTTCAAGGCCGAACAA
CTTAATTTTGTTGGCCTCGTGCTGCGCCTTCTTCTTCAGGCGACAGGCGC
GTGAGGCCAGCTTGTTCTTCTCCTTGCGCGACTTGGGGCGCACATTGAAT
GGCAGCTCGGAAACAGGAGTCATGTCATTGATGGTGCGGCTTAGCTTGTC
CAGTTCCTTGCCAATATTGTGCAGCTTCCTGGCATTGGGAGTTAAATCGT
TACCATCGCCCTTGCGGGCCTTGCCACTGTGCTTGTACACCTTAATGCCT
CGCACGGAGCACGTTGGACTGAAGACGGGGTCTGTCACCTCGTTCAGCAC
ATGAGGATCCTCGAGCTTCGATTGAAAGACCAGTCTCTTTCCCTTGGGTC
CTTTGGCCTGAACATTGTACTGCCAGAAAAATCGCTCTTTGCCCTTGCTA
CTGGACAAATGGTTTGGTGTCGAGGTACGCGTTTCATCTTCATCCTCAGA
GAGTCCATTGTCGCTGCTACAATCGTCGTAGTTATCGCTATTCTCACTCG
AATTGTCATCCTCATCGTCCTGCGAGAAGTCAATGCCATCCGGGGACAAG
ACACTGCCCGTGCTCAGTGAAGAGAAGCTCTCGGCCTCGGCCAGCGAGCC
GGTGGAGAGTAAATGCTGTCGTGGCTCCCGCCGCATCCAGAATGTGCTCC
AATCCCCAGTGCGTCGGAGCCGACCAGCTGAGGCAAC
BO03548.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:50:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13624-PB | 2268 | CG13624-RB | 1544..2265 | 741..20 | 3610 | 100 | Minus |
CG13624-PD | 2268 | CG13624-RD | 1544..2265 | 741..20 | 3610 | 100 | Minus |
CG13624-PA | 2268 | CG13624-RA | 1544..2265 | 741..20 | 3610 | 100 | Minus |
CG13624-PC | 2268 | CG13624-RC | 1544..2265 | 741..20 | 3610 | 100 | Minus |
CG13624-PE | 2445 | CG13624-RE | 1544..2209 | 741..76 | 3330 | 100 | Minus |
CG13624-PF | 2445 | CG13624-RF | 1544..2209 | 741..76 | 3330 | 100 | Minus |
CG13624-PB | 2268 | CG13624-RB | 1502..1544 | 784..742 | 165 | 95.3 | Minus |
CG13624-PD | 2268 | CG13624-RD | 1502..1544 | 784..742 | 165 | 95.3 | Minus |
CG13624-PA | 2268 | CG13624-RA | 1502..1544 | 784..742 | 165 | 95.3 | Minus |
CG13624-PC | 2268 | CG13624-RC | 1502..1544 | 784..742 | 165 | 95.3 | Minus |
CG13624-PE | 2445 | CG13624-RE | 1502..1544 | 784..742 | 165 | 95.3 | Minus |
CG13624-PF | 2445 | CG13624-RF | 1502..1544 | 784..742 | 165 | 95.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:37:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13624-RG | 3698 | CG13624-RG | 2277..3044 | 784..16 | 3775 | 99.5 | Minus |
CG13624-RC | 4228 | CG13624-RC | 2807..3574 | 784..16 | 3775 | 99.5 | Minus |
CG13624-RA | 3864 | CG13624-RA | 1934..2701 | 784..16 | 3775 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:37:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24560890..24561341 | 332..784 | 2185 | 99.3 | Plus |
3R | 32079331 | 3R | 24560507..24560824 | 16..333 | 1575 | 99.7 | Plus |
Blast to na_te.dros performed 2015-02-12 10:37:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib1 | 2167 | transib1 TRANSIB1 2167bp | 540..625 | 614..526 | 112 | 62.9 | Minus |
BO03548.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:44:31 Download gff for
BO03548.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13624-PA | 1499..2268 | 17..787 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:49:04 Download gff for
BO03548.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13624-PC | 1499..2268 | 17..787 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:50:33 Download gff for
BO03548.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13624-RD | 1751..2527 | 8..787 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:12:44 Download gff for
BO03548.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13624-RA | 1931..2707 | 8..787 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:12:44 Download gff for
BO03548.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24560501..24560822 | 8..331 | 98 | <- | Plus |
3R | 24560890..24561344 | 332..787 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:50:33 Download gff for
BO03548.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20386223..20386544 | 8..331 | 98 | <- | Plus |
arm_3R | 20386612..20387066 | 332..787 | 99 | | Plus |
BO03548.5prime Sequence
778 bp (662 high quality bases) assembled on 2005-11-30
> BO03548.5prime
GAAGTTATCAGTCGACATGACAGAGAATCAGCTGTATCCCATGTCATCGG
AGTTCTTTGACACCGGCTCGAACAGCAGCAGCAACACACTTAAATACGAT
CTGTATTCCCTGGGCTCCACCGTTGTGGGGGCGGCGCTGCCCACGTTGAC
GATCAACACGGGCTACGGCAGCAGCAGCAGCAACAATAACAACACTAATA
ACAACAATAACAACAGCAGTAGTCACAGCAGCAGCAGCAACTGCTCCACC
AGCACCACAAATACCTGTAATGTAATGCTAAGTACAACGGCCATAACAAT
ACCACGCAGCAGCAACCACAACCAGATCCATCATCATCCGTATCAGCAGT
CCGATTTGCAGACACCGCGCCATCATCCCAGTCCTCTACACACGTTGCCC
AGCATGACCCATCAGCAAAATCAGCTTCAGCAGCAGCAGCAGCAGCAACA
CCACAACCAACAGCAGCAGCTGCAGCAATCGCATTTGGCACTGGGAGAGC
TTTCAGACTTTGGACTAGATGCACTGGATGCCGCTTCGCTATCGCCCACT
CTGCTGCAGGATGTGAGCCTGAGTGCTGTTTCTCCTCTAAGCACCACACT
CTACAATGGCAACACCAGTGGAGCAGGCAGCAGCAACGGAATAGGATCCG
GCAGTGGTGGCTACTTCACGCCCGACATGTCGCACAGCCTCAGCCTGAAT
GTGGTCAGTGAGCAGGTTCTGCTGCAGGAAGCCACAACCCCAAATGAGTT
GCTCTACGAGATGACCCCCAACTCGAAT
BO03548.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:50:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13624-PB | 2268 | CG13624-RB | 1..762 | 17..778 | 3760 | 99.7 | Plus |
CG13624-PD | 2268 | CG13624-RD | 1..762 | 17..778 | 3760 | 99.7 | Plus |
CG13624-PA | 2268 | CG13624-RA | 1..762 | 17..778 | 3760 | 99.7 | Plus |
CG13624-PC | 2268 | CG13624-RC | 1..762 | 17..778 | 3760 | 99.7 | Plus |
CG13624-PE | 2445 | CG13624-RE | 1..762 | 17..778 | 3760 | 99.7 | Plus |
CG13624-PF | 2445 | CG13624-RF | 1..762 | 17..778 | 3760 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:17:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13624-RG | 3698 | CG13624-RG | 776..1537 | 17..778 | 3780 | 99.7 | Plus |
CG13624-RF | 3805 | CG13624-RF | 433..1194 | 17..778 | 3780 | 99.7 | Plus |
CG13624-RE | 3680 | CG13624-RE | 308..1069 | 17..778 | 3780 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:17:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24562081..24562842 | 778..17 | 3780 | 99.7 | Minus |
Blast to na_te.dros performed 2015-02-11 02:17:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2671 | 152..483 | 377 | 60.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..7186 | 156..632 | 351 | 56.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..7086 | 169..477 | 334 | 60 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2641 | 169..477 | 330 | 60.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..7004 | 188..470 | 255 | 57.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2543 | 190..454 | 236 | 60.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6952 | 209..445 | 234 | 58.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1049..1160 | 218..328 | 152 | 63.2 | Plus |
BO03548.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:44:32 Download gff for
BO03548.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13624-PA | 1..762 | 17..778 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:49:05 Download gff for
BO03548.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13624-PF | 1..762 | 17..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:45:24 Download gff for
BO03548.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13624-RC | 1306..2067 | 17..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:24:41 Download gff for
BO03548.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13624-RE | 308..1069 | 17..778 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:24:41 Download gff for
BO03548.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24562081..24562842 | 17..778 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:45:24 Download gff for
BO03548.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20387803..20388564 | 17..778 | 99 | | Minus |