Clone Sequence Records
BO03558.3prime Sequence
782 bp (701 high quality bases) assembled on 2005-11-30
> BO03558.3prime
ATGGTCTAGAAAGCTTCTTCTTCTGCTGGACCTTGCTGAGCAGGATGAGG
CGTTCACCCTCGGTGAGGTGTTCATAGAAAGTGGGAAAGTGTTCGTTCTG
CGTGAAGGTGGTAAGGAACTTCTGCAGGTTGTCGGCTATGTCGCCCTGGT
AGTTGGTTTCCTTCAGCAGCTCTTGCAACAGTTGTTCGTCCTCGGCGTTA
TCCTCGTCAGATTCGAACAGATCGGATATGTAACGCGGCTTGTCCGGATT
TCCGGGCGCATCCTCATCATCGCCATCCTCTTCGCTGTCCGTAAGAGGTT
CGTCGCTCTTGCCCTCCTGGAAGTGCTGGTACTCGGAGATCAAAACCTTG
AAGATCTTGACGAGAGCCGGAATTGTTACCCACTTCTGGGTTGTAGCTGC
CACGGATCGAGTACGTCTGCGCGTGTCGGTGGGGTCGTCCACCAGTTCTT
TGAATGTTATTGTGGTCAAACGGTTGTCCTGAGTGGCAACACCATACTCG
AACAGCTTGCACAGAGCCATGGTGGTGACCTTTCGCTCATAGTTTCCGAA
AAAGGAGTTCTGGCGGGAGAGCCAGTTTGTGAGTACAAACTGCATCGCTG
GCTCCCCGTTGGGTCCGGGAACGGTGGACAGAAAGTTGAGTACGGCGTCC
ATTTGCGTGAGGAACAAATGGGCGAAGATCAACACAAGATTCATTATCAC
TTTTAGGCACTCGAGGTTCTGCATTTTGCTTATCACAGCCTTCAGCAGCA
TGTCCACATTCTGGCCGAGCATGCTTCCCATC
BO03558.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:50:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5252-PA | 3057 | Ranbp9-RA | 2292..3054 | 782..20 | 3815 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:29:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ranbp9-RD | 3243 | CG5252-RD | 2396..3158 | 782..20 | 3815 | 100 | Minus |
| Ranbp9-RA | 3311 | CG5252-RA | 2464..3226 | 782..20 | 3815 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:29:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11415546..11416057 | 531..20 | 2560 | 100 | Minus |
| 3R | 32079331 | 3R | 11415238..11415492 | 782..528 | 1275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:29:21 has no hits.
BO03558.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:44:38 Download gff for
BO03558.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5252-PA | 2292..3057 | 17..782 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:49:13 Download gff for
BO03558.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5252-PA | 2292..3057 | 17..782 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:38:09 Download gff for
BO03558.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp9-RA | 2464..3229 | 17..782 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:22:53 Download gff for
BO03558.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp9-RA | 2464..3229 | 17..782 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:22:53 Download gff for
BO03558.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11415238..11415490 | 530..782 | 100 | -> | Minus |
| 3R | 11415548..11416060 | 17..529 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:38:09 Download gff for
BO03558.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7240960..7241212 | 530..782 | 100 | -> | Minus |
| arm_3R | 7241270..7241782 | 17..529 | 99 | | Minus |
BO03558.5prime Sequence
783 bp (761 high quality bases) assembled on 2005-11-30
> BO03558.5prime
GAAGTTATCAGTCGACATGTCGCTGCAATTCCAAAACGACTGCGGGGACT
CCGTTAAGCAAGCCATCATCGAGGAGCTGCAGAACCTACTTAGCTCGGAC
ACAGGAGTCCTGCAGCAGACAGAAAAGAGGATCAAGCAGCTGGAGTACAC
GGAAGGCTATGGCGTCTACCTGTCCGAGATCATTATGAACCAGGCGCACG
AGCTGCCACTCCGTCAAATCGCGATCGTGATGCTCACTCGTTACGTGGAG
AACCACTGGACGGATGACGATGATGTTAAAAGGAAAGCCAACGGTTGTAT
GGCCAGCGAGCAGGCCAAGCGAACCATACGAAACATTCTGCCAAACGGAC
TGTATGATCCCAATTCAAAGATACGCTCCTCAGTCGCGCATACCATCTCC
ACCATAGCCGCCACGGATTACCCACATTGTTGGGCGGAGCTGTTCGACAT
CATTGTCAAATGCCTGGGCGGCAATGAGGATTCCATACACGGTGCCATGC
AGGTGCTGCAGGATTTCAGCTACGACGTGGAGCAAATCAAGGAACTGGGT
CCAGTAGTCATACCCGAAGTCTATCGCATCTTCGACTCCGAGCAAAATTA
CTCGATCAAAACAAGAGTTTCGGCCATTCGCATCTTGAAGCCACTTTTTG
CATCCATTGCTGCACTGATCACCAACAAAGAAGAGCAGAGCACCATGATG
AGCTCCATTTTGACAAACTTTATGGACAAGCTTATGCATTACCTGAGCAT
GAATAGCGGCGCCGTTTCCAGTTTCCTGCTTCG
BO03558.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:50:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5252-PA | 3057 | Ranbp9-RA | 1..767 | 17..783 | 3835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:55:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ranbp9-RD | 3243 | CG5252-RD | 105..871 | 17..783 | 3835 | 100 | Plus |
| Ranbp9-RA | 3311 | CG5252-RA | 173..939 | 17..783 | 3835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:55:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11412913..11413542 | 154..783 | 3150 | 100 | Plus |
| 3R | 32079331 | 3R | 11412694..11412833 | 17..156 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:55:53 has no hits.
BO03558.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:44:39 Download gff for
BO03558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5252-PA | 1..767 | 17..783 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:49:15 Download gff for
BO03558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5252-PA | 1..767 | 17..783 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:35:18 Download gff for
BO03558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp9-RA | 171..939 | 14..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:30:36 Download gff for
BO03558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp9-RA | 171..939 | 14..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:30:36 Download gff for
BO03558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11412692..11412832 | 14..155 | 99 | -> | Plus |
| 3R | 11412915..11413542 | 156..783 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:35:18 Download gff for
BO03558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7238414..7238554 | 14..155 | 99 | -> | Plus |
| arm_3R | 7238637..7239264 | 156..783 | 100 | | Plus |
