Clone Sequence Records
BO03603.3prime Sequence
557 bp (556 high quality bases) assembled on 2005-12-01
> BO03603.3prime
ATGGTCTAGAAAGCTTGCTTTCTGCTCATCCTTGTCCTTGGCACCGTGCT
TAAGGATGCGCGTGAATTCGAGGTAGTCGAACAGACCGTTTTTGATGGGC
GCCTCCCGATACATCTCGTCCACATCCTCGTCTGTGAACCGATCACCCAT
GGTGGTCAGCAGCTCCCTCAGGCGATCCTCGGGCAGGACGCCCATATTCT
CCTCGTCGAAGCAGCCGAAGGCGTTCTTGATCACATCCTCGGGATCGGTG
CCCTGCAGCCGCTCGCCGAAGAGCGTGAGGAACATGGTGAAGTTGATGGG
CCCGGGCGCCTCGTTCATCATGCCATCGAGATAGTCGTCCGTTGGGTTCT
TGCCCAGCGAGGCCAGCATGTCGTGCAGATCCTCCTTCTCGACGAAGCCA
TCACGGTTCTGGTCGATCATGTTGAATGCCTCCTTGAACTCGGCAATCTG
CGCCTGATCGAACATGGCGAACACATTGGAGGTGGCGCGTTGGGCGCGCT
TCTTGGTGGTGGCGCGACGTCCGGCGGTCTTACGGGATGACATGTCGACT
GATAACT
BO03603.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:50:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3595-PA | 525 | sqh-RA | 1..522 | 543..22 | 2610 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:56:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqh-RE | 1024 | CG3595-RE | 153..679 | 544..18 | 2620 | 99.8 | Minus |
sqh-RD | 1097 | CG3595-RD | 226..752 | 544..18 | 2620 | 99.8 | Minus |
sqh-RC | 1403 | CG3595-RC | 532..1058 | 544..18 | 2620 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:56:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6223583..6224005 | 122..544 | 2115 | 100 | Plus |
X | 23542271 | X | 6223406..6223511 | 18..123 | 515 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:56:22 has no hits.
BO03603.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:44:54 Download gff for
BO03603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqh-PA | 1..525 | 19..543 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:49:39 Download gff for
BO03603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3595-PA | 1..525 | 19..543 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:35:28 Download gff for
BO03603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqh-RB | 215..748 | 18..551 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:32:22 Download gff for
BO03603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqh-RC | 525..1058 | 18..551 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:32:22 Download gff for
BO03603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6223406..6223511 | 18..123 | 99 | <- | Plus |
X | 6223585..6224012 | 124..551 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:35:28 Download gff for
BO03603.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6117439..6117544 | 18..123 | 99 | <- | Plus |
arm_X | 6117618..6118045 | 124..551 | 99 | | Plus |
BO03603.5prime Sequence
557 bp (556 high quality bases) assembled on 2005-12-01
> BO03603.5prime
GAAGTTATCAGTCGACATGTCATCCCGTAAGACCGCCGGACGTCGCGCCA
CCACCAAGAAGCGCGCCCAACGCGCCACCTCCAATGTGTTCGCCATGTTC
GATCAGGCGCAGATTGCCGAGTTCAAGGAGGCATTCAACATGATCGACCA
GAACCGTGATGGCTTCGTCGAGAAGGAGGATCTGCACGACATGCTGGCCT
CGCTGGGCAAGAACCCAACGGACGACTATCTCGATGGCATGATGAACGAG
GCGCCCGGGCCCATCAACTTCACCATGTTCCTCACGCTCTTCGGCGAGCG
GCTGCAGGGCACCGATCCCGAGGATGTGATCAAGAACGCCTTCGGCTGCT
TCGACGAGGAGAATATGGGCGTCCTGCCCGAGGATCGCCTGAGGGAGCTG
CTGACCACCATGGGTGATCGGTTCACAGACGAGGATGTGGACGAGATGTA
TCGGGAGGCGCCCATCAAAAACGGTCTGTTCGACTACCTCGAATTCACGC
GCATCCTTAAGCACGGTGCCAAGGACAAGGATGAGCAGAAAGCAAGCTTT
CTAGACC
BO03603.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:50:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3595-PA | 525 | sqh-RA | 1..522 | 17..538 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:29:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqh-RE | 1024 | CG3595-RE | 153..679 | 16..542 | 2620 | 99.8 | Plus |
sqh-RD | 1097 | CG3595-RD | 226..752 | 16..542 | 2620 | 99.8 | Plus |
sqh-RC | 1403 | CG3595-RC | 532..1058 | 16..542 | 2620 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:29:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6223583..6224005 | 438..16 | 2115 | 100 | Minus |
X | 23542271 | X | 6223406..6223511 | 542..437 | 515 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:29:48 has no hits.
BO03603.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:44:55 Download gff for
BO03603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqh-PA | 1..525 | 17..541 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:49:40 Download gff for
BO03603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3595-PA | 1..525 | 17..541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:38:12 Download gff for
BO03603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqh-RB | 215..748 | 9..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:22:58 Download gff for
BO03603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqh-RC | 525..1058 | 9..542 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:22:58 Download gff for
BO03603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6223406..6223511 | 437..542 | 99 | <- | Minus |
X | 6223585..6224012 | 9..436 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:38:12 Download gff for
BO03603.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6117439..6117544 | 437..542 | 99 | <- | Minus |
arm_X | 6117618..6118045 | 9..436 | 99 | | Minus |
BO03603.complete Sequence
559 bp (559 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629568
> BO03603.complete
GAAGTTATCAGTCGACATGTCATCCCGTAAGACCGCCGGACGTCGCGCCA
CCACCAAGAAGCGCGCCCAACGCGCCACCTCCAATGTGTTCGCCATGTTC
GATCAGGCGCAGATTGCCGAGTTCAAGGAGGCATTCAACATGATCGACCA
GAACCGTGATGGCTTCGTCGAGAAGGAGGATCTGCACGACATGCTGGCCT
CGCTGGGCAAGAACCCAACGGACGACTATCTCGATGGCATGATGAACGAG
GCGCCCGGGCCCATCAACTTCACCATGTTCCTCACGCTCTTCGGCGAGCG
GCTGCAGGGCACCGATCCCGAGGATGTGATCAAGAACGCCTTCGGCTGCT
TCGACGAGGAGAATATGGGCGTCCTGCCCGAGGATCGCCTGAGGGAGCTG
CTGACCACCATGGGTGATCGGTTCACAGACGAGGATGTGGACGAGATGTA
TCGGGAGGCGCCCATCAAAAACGGTCTGTTCGACTACCTCGAATTCACGC
GCATCCTTAAGCACGGTGCCAAGGACAAGGATGAGCAGAAAGCAAGCTTT
CTAGACCAT
BO03603.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqh-RE | 525 | CG3595-PE | 1..522 | 17..538 | 2610 | 100 | Plus |
sqh-RD | 525 | CG3595-PD | 1..522 | 17..538 | 2610 | 100 | Plus |
sqh-RC | 525 | CG3595-PC | 1..522 | 17..538 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqh-RE | 1024 | CG3595-RE | 153..679 | 16..542 | 2620 | 99.8 | Plus |
sqh-RD | 1097 | CG3595-RD | 226..752 | 16..542 | 2620 | 99.8 | Plus |
sqh-RC | 1403 | CG3595-RC | 532..1058 | 16..542 | 2620 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6223583..6224005 | 438..16 | 2115 | 100 | Minus |
X | 23542271 | X | 6223406..6223511 | 542..437 | 515 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:31:06 has no hits.
BO03603.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:44:56 Download gff for
BO03603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqh-RA | 1..525 | 17..541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:15:31 Download gff for
BO03603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqh-RA | 262..795 | 9..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:16 Download gff for
BO03603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqh-RB | 223..748 | 17..543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:44:56 Download gff for
BO03603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqh-RA | 262..795 | 9..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:10 Download gff for
BO03603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sqh-RC | 533..1058 | 17..543 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:10 Download gff for
BO03603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6223405..6223511 | 437..543 | 98 | <- | Minus |
X | 6223585..6224004 | 17..436 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:16 Download gff for
BO03603.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6117438..6117544 | 437..543 | 98 | <- | Minus |
arm_X | 6117618..6118037 | 17..436 | 100 | | Minus |
BO03603.pep Sequence
Translation from 16 to 559
> BO03603.pep
MSSRKTAGRRATTKKRAQRATSNVFAMFDQAQIAEFKEAFNMIDQNRDGF
VEKEDLHDMLASLGKNPTDDYLDGMMNEAPGPINFTMFLTLFGERLQGTD
PEDVIKNAFGCFDEENMGVLPEDRLRELLTTMGDRFTDEDVDEMYREAPI
KNGLFDYLEFTRILKHGAKDKDEQKASFLDH
BO03603.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:39:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sqh-PE | 174 | CG3595-PE | 1..174 | 1..174 | 909 | 100 | Plus |
sqh-PD | 174 | CG3595-PD | 1..174 | 1..174 | 909 | 100 | Plus |
sqh-PC | 174 | CG3595-PC | 1..174 | 1..174 | 909 | 100 | Plus |
sqh-PB | 174 | CG3595-PB | 1..174 | 1..174 | 909 | 100 | Plus |
sqh-PA | 174 | CG3595-PA | 1..174 | 1..174 | 909 | 100 | Plus |