Clone BO03603 Report

Search the DGRC for BO03603

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:36
Well:3
Vector:pDNR-Dual
Associated Gene/Transcriptsqh-RA
Protein status:BO03603.pep:
Sequenced Size:559

Clone Sequence Records

BO03603.3prime Sequence

557 bp (556 high quality bases) assembled on 2005-12-01

> BO03603.3prime
ATGGTCTAGAAAGCTTGCTTTCTGCTCATCCTTGTCCTTGGCACCGTGCT
TAAGGATGCGCGTGAATTCGAGGTAGTCGAACAGACCGTTTTTGATGGGC
GCCTCCCGATACATCTCGTCCACATCCTCGTCTGTGAACCGATCACCCAT
GGTGGTCAGCAGCTCCCTCAGGCGATCCTCGGGCAGGACGCCCATATTCT
CCTCGTCGAAGCAGCCGAAGGCGTTCTTGATCACATCCTCGGGATCGGTG
CCCTGCAGCCGCTCGCCGAAGAGCGTGAGGAACATGGTGAAGTTGATGGG
CCCGGGCGCCTCGTTCATCATGCCATCGAGATAGTCGTCCGTTGGGTTCT
TGCCCAGCGAGGCCAGCATGTCGTGCAGATCCTCCTTCTCGACGAAGCCA
TCACGGTTCTGGTCGATCATGTTGAATGCCTCCTTGAACTCGGCAATCTG
CGCCTGATCGAACATGGCGAACACATTGGAGGTGGCGCGTTGGGCGCGCT
TCTTGGTGGTGGCGCGACGTCCGGCGGTCTTACGGGATGACATGTCGACT
GATAACT

BO03603.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3595-PA 525 sqh-RA 1..522 543..22 2610 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
sqh-RE 1024 CG3595-RE 153..679 544..18 2620 99.8 Minus
sqh-RD 1097 CG3595-RD 226..752 544..18 2620 99.8 Minus
sqh-RC 1403 CG3595-RC 532..1058 544..18 2620 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6223583..6224005 122..544 2115 100 Plus
X 23542271 X 6223406..6223511 18..123 515 99.1 Plus
Blast to na_te.dros performed on 2015-02-12 00:56:22 has no hits.

BO03603.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:44:54 Download gff for BO03603.3prime
Subject Subject Range Query Range Percent Splice Strand
sqh-PA 1..525 19..543 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:49:39 Download gff for BO03603.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3595-PA 1..525 19..543 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:35:28 Download gff for BO03603.3prime
Subject Subject Range Query Range Percent Splice Strand
sqh-RB 215..748 18..551 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:32:22 Download gff for BO03603.3prime
Subject Subject Range Query Range Percent Splice Strand
sqh-RC 525..1058 18..551 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:32:22 Download gff for BO03603.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6223406..6223511 18..123 99 <- Plus
X 6223585..6224012 124..551 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:35:28 Download gff for BO03603.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6117439..6117544 18..123 99 <- Plus
arm_X 6117618..6118045 124..551 99   Plus

BO03603.5prime Sequence

557 bp (556 high quality bases) assembled on 2005-12-01

> BO03603.5prime
GAAGTTATCAGTCGACATGTCATCCCGTAAGACCGCCGGACGTCGCGCCA
CCACCAAGAAGCGCGCCCAACGCGCCACCTCCAATGTGTTCGCCATGTTC
GATCAGGCGCAGATTGCCGAGTTCAAGGAGGCATTCAACATGATCGACCA
GAACCGTGATGGCTTCGTCGAGAAGGAGGATCTGCACGACATGCTGGCCT
CGCTGGGCAAGAACCCAACGGACGACTATCTCGATGGCATGATGAACGAG
GCGCCCGGGCCCATCAACTTCACCATGTTCCTCACGCTCTTCGGCGAGCG
GCTGCAGGGCACCGATCCCGAGGATGTGATCAAGAACGCCTTCGGCTGCT
TCGACGAGGAGAATATGGGCGTCCTGCCCGAGGATCGCCTGAGGGAGCTG
CTGACCACCATGGGTGATCGGTTCACAGACGAGGATGTGGACGAGATGTA
TCGGGAGGCGCCCATCAAAAACGGTCTGTTCGACTACCTCGAATTCACGC
GCATCCTTAAGCACGGTGCCAAGGACAAGGATGAGCAGAAAGCAAGCTTT
CTAGACC

BO03603.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3595-PA 525 sqh-RA 1..522 17..538 2610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
sqh-RE 1024 CG3595-RE 153..679 16..542 2620 99.8 Plus
sqh-RD 1097 CG3595-RD 226..752 16..542 2620 99.8 Plus
sqh-RC 1403 CG3595-RC 532..1058 16..542 2620 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6223583..6224005 438..16 2115 100 Minus
X 23542271 X 6223406..6223511 542..437 515 99.1 Minus
Blast to na_te.dros performed on 2015-02-10 16:29:48 has no hits.

BO03603.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:44:55 Download gff for BO03603.5prime
Subject Subject Range Query Range Percent Splice Strand
sqh-PA 1..525 17..541 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:49:40 Download gff for BO03603.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3595-PA 1..525 17..541 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 02:38:12 Download gff for BO03603.5prime
Subject Subject Range Query Range Percent Splice Strand
sqh-RB 215..748 9..542 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:22:58 Download gff for BO03603.5prime
Subject Subject Range Query Range Percent Splice Strand
sqh-RC 525..1058 9..542 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:22:58 Download gff for BO03603.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6223406..6223511 437..542 99 <- Minus
X 6223585..6224012 9..436 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 02:38:12 Download gff for BO03603.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6117439..6117544 437..542 99 <- Minus
arm_X 6117618..6118045 9..436 99   Minus

BO03603.complete Sequence

559 bp (559 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629568

> BO03603.complete
GAAGTTATCAGTCGACATGTCATCCCGTAAGACCGCCGGACGTCGCGCCA
CCACCAAGAAGCGCGCCCAACGCGCCACCTCCAATGTGTTCGCCATGTTC
GATCAGGCGCAGATTGCCGAGTTCAAGGAGGCATTCAACATGATCGACCA
GAACCGTGATGGCTTCGTCGAGAAGGAGGATCTGCACGACATGCTGGCCT
CGCTGGGCAAGAACCCAACGGACGACTATCTCGATGGCATGATGAACGAG
GCGCCCGGGCCCATCAACTTCACCATGTTCCTCACGCTCTTCGGCGAGCG
GCTGCAGGGCACCGATCCCGAGGATGTGATCAAGAACGCCTTCGGCTGCT
TCGACGAGGAGAATATGGGCGTCCTGCCCGAGGATCGCCTGAGGGAGCTG
CTGACCACCATGGGTGATCGGTTCACAGACGAGGATGTGGACGAGATGTA
TCGGGAGGCGCCCATCAAAAACGGTCTGTTCGACTACCTCGAATTCACGC
GCATCCTTAAGCACGGTGCCAAGGACAAGGATGAGCAGAAAGCAAGCTTT
CTAGACCAT

BO03603.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
sqh-RE 525 CG3595-PE 1..522 17..538 2610 100 Plus
sqh-RD 525 CG3595-PD 1..522 17..538 2610 100 Plus
sqh-RC 525 CG3595-PC 1..522 17..538 2610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:08
Subject Length Description Subject Range Query Range Score Percent Strand
sqh-RE 1024 CG3595-RE 153..679 16..542 2620 99.8 Plus
sqh-RD 1097 CG3595-RD 226..752 16..542 2620 99.8 Plus
sqh-RC 1403 CG3595-RC 532..1058 16..542 2620 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6223583..6224005 438..16 2115 100 Minus
X 23542271 X 6223406..6223511 542..437 515 99.1 Minus
Blast to na_te.dros performed on 2014-11-27 14:31:06 has no hits.

BO03603.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:44:56 Download gff for BO03603.complete
Subject Subject Range Query Range Percent Splice Strand
sqh-RA 1..525 17..541 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:15:31 Download gff for BO03603.complete
Subject Subject Range Query Range Percent Splice Strand
sqh-RA 262..795 9..542 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:29:16 Download gff for BO03603.complete
Subject Subject Range Query Range Percent Splice Strand
sqh-RB 223..748 17..543 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:44:56 Download gff for BO03603.complete
Subject Subject Range Query Range Percent Splice Strand
sqh-RA 262..795 9..542 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:47:10 Download gff for BO03603.complete
Subject Subject Range Query Range Percent Splice Strand
sqh-RC 533..1058 17..543 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:47:10 Download gff for BO03603.complete
Subject Subject Range Query Range Percent Splice Strand
X 6223405..6223511 437..543 98 <- Minus
X 6223585..6224004 17..436 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:29:16 Download gff for BO03603.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6117438..6117544 437..543 98 <- Minus
arm_X 6117618..6118037 17..436 100   Minus

BO03603.pep Sequence

Translation from 16 to 559

> BO03603.pep
MSSRKTAGRRATTKKRAQRATSNVFAMFDQAQIAEFKEAFNMIDQNRDGF
VEKEDLHDMLASLGKNPTDDYLDGMMNEAPGPINFTMFLTLFGERLQGTD
PEDVIKNAFGCFDEENMGVLPEDRLRELLTTMGDRFTDEDVDEMYREAPI
KNGLFDYLEFTRILKHGAKDKDEQKASFLDH

BO03603.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
sqh-PE 174 CG3595-PE 1..174 1..174 909 100 Plus
sqh-PD 174 CG3595-PD 1..174 1..174 909 100 Plus
sqh-PC 174 CG3595-PC 1..174 1..174 909 100 Plus
sqh-PB 174 CG3595-PB 1..174 1..174 909 100 Plus
sqh-PA 174 CG3595-PA 1..174 1..174 909 100 Plus