Clone BO03607 Report

Search the DGRC for BO03607

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:36
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG8578-RA
Protein status:BO03607.pep:
Sequenced Size:1225

Clone Sequence Records

BO03607.3prime Sequence

747 bp (746 high quality bases) assembled on 2005-12-01

> BO03607.3prime
ATGGTCTAGAAAGCTTGCTCTTAAGTCCTTTAGAATGGCACTCTTTGCGT
TTTTCAACTTATCGAGGCGTTTCAACAAATGGTTGTTGGACGTTTCAGCT
TCCTCCAACTTCTCCAAGAGTTCCCGGTGCTCGCGTTGCAGCTTGCGGCG
CTCCAGCTTCAGCTCAGCCTCCGCCTTTTCGGCAGCTTCTGCGGTGCTTT
TGTATCGGATTACTTGAGTTTCGGAGCGCGCTAGGCTCGACTGTAGGTTG
GCGATTTCCTGTTCCGCCTTTTGCAGCTTATATTTATGGTCTGAAATGAT
TTTGTTTGTTTCCCGTTGGGCCTCGTAATCATTCTCATCGCCGAAGGAAC
CTTGCGAAAGACTGCGGCGTCCGGAAATTCCATCACTTTTATACTCGTCA
AGTTGTTCGTGAAGCTTCTGCACCTCCGCCAGCAGCCGCTGCTTCTCGTC
ACTGAACTTTTTAAGTCTAACGTCTAAAGAACCCTGCACGGAGGCCAGCA
CCTTGGCATTCTCGACACTCACTAGAGCTCGCTTGGCATCGCTGCCATCG
GCATTTTCAACTGCTACAATTAGAAGGCCCTGTTCGGCGATCAACGAGTC
GCGCTCGTTTAACTGCCCTTGTACTAGCTTAAGCTCGAGATTGGCGCGAT
CCAGGTTGCGTTTGAGGGCATTGCAGTCACGCATCTTCTCCTTGAACTCG
CGCTGTAGTTGTGCATACGACTCTTCCATTATTTCGCATTTGTCCTT

BO03607.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8578-PA 1191 CG8578-RA 463..1188 747..22 3630 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8578-RC 1847 CG8578-RC 574..1299 747..22 3630 100 Minus
CG8578-RB 1474 CG8578-RB 554..1279 747..22 3630 100 Minus
CG8578-RA 1615 CG8578-RA 574..1299 747..22 3630 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15846074..15846347 747..474 1370 100 Minus
X 23542271 X 15846957..15847141 314..130 925 100 Minus
X 23542271 X 15846407..15846568 475..314 810 100 Minus
X 23542271 X 15847201..15847310 131..22 550 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:29:34 has no hits.

BO03607.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:45:00 Download gff for BO03607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8578-PA 463..1191 19..747 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:49:46 Download gff for BO03607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8578-PA 463..1191 19..747 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:25:58 Download gff for BO03607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8578-RA 553..1287 14..747 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:12:15 Download gff for BO03607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8578-RA 574..1308 14..747 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:12:15 Download gff for BO03607.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15846957..15847141 130..314 100 -> Minus
X 15847203..15847319 14..129 97   Minus
X 15846074..15846347 474..747 100 -> Minus
X 15846409..15846567 315..473 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:25:58 Download gff for BO03607.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15740107..15740380 474..747 100 -> Minus
arm_X 15740442..15740600 315..473 100 -> Minus
arm_X 15740990..15741174 130..314 100 -> Minus
arm_X 15741236..15741352 14..129 97   Minus

BO03607.5prime Sequence

734 bp (709 high quality bases) assembled on 2005-12-01

> BO03607.5prime
GAAGTTATCAGTCGACATGGAAAGTATCAGCACCACAGGTCGGCGACGGA
ACAACATGCGAATCAATGCCGAAGACAATGCGCTGGATCAAATTACGAAA
GAGGCGGAAGCGCGACTTGCTGCGCGTCGACAGGCGCGCGCCGAAGCCCG
CGAGATTCGCATGAGGGAGCTGGAGCGGCAGCAGAAAGAGCAGGAGATCA
CCGCCGACCGGGTCTTCGACATGCAAAACTCCACGGCAGTGGGCAGCGAA
ACTCTGTCGGCGCATCCCGTGCGCCTCGCCTACGGCGGACTGTTAAACGT
GACCCGTGCATCAGCATCCCGCCGCAGCAGTGAGGACTCCGTGGAGGAGG
AGGGCAGAAGTTTTCGCGACTTCAAGCACGAGCTTAAGGATGTTGAGGAG
CGGTTTCGCAAAGCCATGATAACGAACGCCCAGTTGGACAACGATCGCGC
CTCGCAGGCCTACGAAGTCAAGCTACTGAAGGACAAATGCGAAATAATGG
AAGAGTCGTATGCACAACTACAGCGCGAGTTCAAGGAGAAGATGCGTGAC
TGCAATGCCCTCAAACGCAACCTGGATCGCGCCAATCTCGAGCTTAAGCT
AGTACAAGGGCAGTTAAACGAGCGCGACTCGTTGATCGCCGAACAGGGCC
TTCTAATTGTAGCAGTTGAAAATGCCGATGGCAGCGATGCCAAGCGAGCT
CTAGTGAGTGTCGAGAATGCCAAGGTGCTGGCCT

BO03607.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8578-PA 1191 CG8578-RA 1..718 17..734 3590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG8578-RC 1847 CG8578-RC 112..829 17..734 3590 100 Plus
CG8578-RB 1474 CG8578-RB 92..809 17..734 3590 100 Plus
CG8578-RA 1615 CG8578-RA 112..829 17..734 3590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15845982..15846329 387..734 1740 100 Plus
X 23542271 X 15845640..15845927 102..389 1440 100 Plus
X 23542271 X 15845382..15845469 17..104 440 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:30:18 has no hits.

BO03607.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:45:01 Download gff for BO03607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8578-PA 1..718 17..734 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:49:47 Download gff for BO03607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8578-PA 1..718 17..734 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:26:02 Download gff for BO03607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8578-RA 88..808 12..734 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:15:44 Download gff for BO03607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8578-RA 109..829 12..734 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:15:44 Download gff for BO03607.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15845379..15845468 12..103 97 -> Plus
X 15845642..15845926 104..388 100 -> Plus
X 15845984..15846329 389..734 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:26:02 Download gff for BO03607.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15739412..15739501 12..103 97 -> Plus
arm_X 15739675..15739959 104..388 100 -> Plus
arm_X 15740017..15740362 389..734 100   Plus

BO03607.complete Sequence

1225 bp (1225 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629569

> BO03607.complete
GAAGTTATCAGTCGACATGGAAAGTATCAGCACCACAGGTCGGCGACGGA
ACAACATGCGAATCAATGCCGAAGACAATGCGCTGGATCAAATTACGAAA
GAGGCGGAAGCGCGACTTGCTGCGCGTCGACAGGCGCGCGCCGAAGCCCG
CGAGATTCGCATGAGGGAGCTGGAGCGGCAGCAGAAAGAGCAGGAGATCA
CCGCCGACCGGGTCTTCGACATGCAAAACTCCACGGCAGTGGGCAGCGAA
ACTCTGTCGGCGCATCCCGTGCGCCTCGCCTACGGCGGACTGTTAAACGT
GACCCGTGCATCAGCATCCCGCCGCAGCAGTGAGGACTCCGTGGAGGAGG
AGGGCAGAAGTTTTCGCGACTTCAAGCACGAGCTTAAGGATGTTGAGGAG
CGGTTTCGCAAAGCCATGATAACGAACGCCCAGTTGGACAACGATCGCGC
CTCGCAGGCCTACGAAGTCAAGCTACTGAAGGACAAATGCGAAATAATGG
AAGAGTCGTATGCACAACTACAGCGCGAGTTCAAGGAGAAGATGCGTGAC
TGCAATGCCCTCAAACGCAACCTGGATCGCGCCAATCTCGAGCTTAAGCT
AGTACAAGGGCAGTTAAACGAGCGCGACTCGTTGATCGCCGAACAGGGCC
TTCTAATTGTAGCAGTTGAAAATGCCGATGGCAGCGATGCCAAGCGAGCT
CTAGTGAGTGTCGAGAATGCCAAGGTGCTGGCCTCCGTGCAGGGTTCTTT
AGACGTTAGACTTAAAAAGTTCAGTGACGAGAAGCAGCGGCTGCTGGCGG
AGGTGCAGAAGCTTCACGAACAACTTGACGAGTATAAAAGTGATGGAATT
TCCGGACGCCGCAGTCTTTCGCAAGGTTCCTTCGGCGATGAGAATGATTA
CGAGGCCCAACGGGAAACAAACAAAATCATTTCAGACCATAAATATAAGC
TGCAAAAGGCGGAACAGGAAATCGCCAACCTACAGTCGAGCCTAGCGCGC
TCCGAAACTCAAGTAATCCGATACAAAAGCACCGCAGAAGCTGCCGAAAA
GGCGGAGGCTGAGCTGAAGCTGGAGCGCCGCAAGCTGCAACGCGAGCACC
GGGAACTCTTGGAGAAGTTGGAGGAAGCTGAAACGTCCAACAACCATTTG
TTGAAACGCCTCGATAAGTTGAAAAACGCAAAGAGTGCCATTCTAAAGGA
CTTAAGAGCAAGCTTTCTAGACCAT

BO03607.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG8578-RC 1191 CG8578-PC 1..1188 17..1204 5940 100 Plus
CG8578-RB 1191 CG8578-PB 1..1188 17..1204 5940 100 Plus
CG8578-RA 1191 CG8578-PA 1..1188 17..1204 5940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8578-RC 1847 CG8578-RC 112..1299 17..1204 5940 100 Plus
CG8578-RB 1474 CG8578-RB 92..1279 17..1204 5940 100 Plus
CG8578-RA 1615 CG8578-RA 112..1299 17..1204 5940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15845982..15846347 387..752 1830 100 Plus
X 23542271 X 15845640..15845927 102..389 1440 100 Plus
X 23542271 X 15846957..15847141 912..1096 925 100 Plus
X 23542271 X 15846407..15846568 751..912 810 100 Plus
X 23542271 X 15847201..15847310 1095..1204 550 100 Plus
X 23542271 X 15845382..15845469 17..104 440 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:11:10 has no hits.

BO03607.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:44:59 Download gff for BO03607.complete
Subject Subject Range Query Range Percent Splice Strand
CG8578-RA 1..1191 17..1207 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:06:12 Download gff for BO03607.complete
Subject Subject Range Query Range Percent Splice Strand
CG8578-RA 88..1287 12..1212 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:08 Download gff for BO03607.complete
Subject Subject Range Query Range Percent Splice Strand
CG8578-RA 91..1283 17..1209 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:00 Download gff for BO03607.complete
Subject Subject Range Query Range Percent Splice Strand
CG8578-RA 88..1287 12..1212 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:43 Download gff for BO03607.complete
Subject Subject Range Query Range Percent Splice Strand
CG8578-RA 112..1304 17..1209 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:43 Download gff for BO03607.complete
Subject Subject Range Query Range Percent Splice Strand
X 15845642..15845926 104..388 100 -> Plus
X 15845382..15845468 17..103 100 -> Plus
X 15845984..15846347 389..752 100 -> Plus
X 15846409..15846567 753..911 100 -> Plus
X 15846957..15847141 912..1096 100 -> Plus
X 15847203..15847315 1097..1209 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:08 Download gff for BO03607.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15739415..15739501 17..103 100 -> Plus
arm_X 15739675..15739959 104..388 100 -> Plus
arm_X 15740017..15740380 389..752 100 -> Plus
arm_X 15740442..15740600 753..911 100 -> Plus
arm_X 15740990..15741174 912..1096 100 -> Plus
arm_X 15741236..15741348 1097..1209 98   Plus

BO03607.pep Sequence

Translation from 16 to 1225

> BO03607.pep
MESISTTGRRRNNMRINAEDNALDQITKEAEARLAARRQARAEAREIRMR
ELERQQKEQEITADRVFDMQNSTAVGSETLSAHPVRLAYGGLLNVTRASA
SRRSSEDSVEEEGRSFRDFKHELKDVEERFRKAMITNAQLDNDRASQAYE
VKLLKDKCEIMEESYAQLQREFKEKMRDCNALKRNLDRANLELKLVQGQL
NERDSLIAEQGLLIVAVENADGSDAKRALVSVENAKVLASVQGSLDVRLK
KFSDEKQRLLAEVQKLHEQLDEYKSDGISGRRSLSQGSFGDENDYEAQRE
TNKIISDHKYKLQKAEQEIANLQSSLARSETQVIRYKSTAEAAEKAEAEL
KLERRKLQREHRELLEKLEEAETSNNHLLKRLDKLKNAKSAILKDLRASF
LDH

BO03607.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:31:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG8578-PC 396 CG8578-PC 1..396 1..396 1936 100 Plus
CG8578-PB 396 CG8578-PB 1..396 1..396 1936 100 Plus
CG8578-PA 396 CG8578-PA 1..396 1..396 1936 100 Plus
CLIP-190-PN 1598 CG5020-PN 845..1246 27..392 161 22.6 Plus
CLIP-190-PR 1601 CG5020-PR 848..1249 27..392 161 22.6 Plus