Clone Sequence Records
BO03607.3prime Sequence
747 bp (746 high quality bases) assembled on 2005-12-01
> BO03607.3prime
ATGGTCTAGAAAGCTTGCTCTTAAGTCCTTTAGAATGGCACTCTTTGCGT
TTTTCAACTTATCGAGGCGTTTCAACAAATGGTTGTTGGACGTTTCAGCT
TCCTCCAACTTCTCCAAGAGTTCCCGGTGCTCGCGTTGCAGCTTGCGGCG
CTCCAGCTTCAGCTCAGCCTCCGCCTTTTCGGCAGCTTCTGCGGTGCTTT
TGTATCGGATTACTTGAGTTTCGGAGCGCGCTAGGCTCGACTGTAGGTTG
GCGATTTCCTGTTCCGCCTTTTGCAGCTTATATTTATGGTCTGAAATGAT
TTTGTTTGTTTCCCGTTGGGCCTCGTAATCATTCTCATCGCCGAAGGAAC
CTTGCGAAAGACTGCGGCGTCCGGAAATTCCATCACTTTTATACTCGTCA
AGTTGTTCGTGAAGCTTCTGCACCTCCGCCAGCAGCCGCTGCTTCTCGTC
ACTGAACTTTTTAAGTCTAACGTCTAAAGAACCCTGCACGGAGGCCAGCA
CCTTGGCATTCTCGACACTCACTAGAGCTCGCTTGGCATCGCTGCCATCG
GCATTTTCAACTGCTACAATTAGAAGGCCCTGTTCGGCGATCAACGAGTC
GCGCTCGTTTAACTGCCCTTGTACTAGCTTAAGCTCGAGATTGGCGCGAT
CCAGGTTGCGTTTGAGGGCATTGCAGTCACGCATCTTCTCCTTGAACTCG
CGCTGTAGTTGTGCATACGACTCTTCCATTATTTCGCATTTGTCCTT
BO03607.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8578-PA | 1191 | CG8578-RA | 463..1188 | 747..22 | 3630 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:29:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8578-RC | 1847 | CG8578-RC | 574..1299 | 747..22 | 3630 | 100 | Minus |
CG8578-RB | 1474 | CG8578-RB | 554..1279 | 747..22 | 3630 | 100 | Minus |
CG8578-RA | 1615 | CG8578-RA | 574..1299 | 747..22 | 3630 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:29:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15846074..15846347 | 747..474 | 1370 | 100 | Minus |
X | 23542271 | X | 15846957..15847141 | 314..130 | 925 | 100 | Minus |
X | 23542271 | X | 15846407..15846568 | 475..314 | 810 | 100 | Minus |
X | 23542271 | X | 15847201..15847310 | 131..22 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:29:34 has no hits.
BO03607.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:45:00 Download gff for
BO03607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8578-PA | 463..1191 | 19..747 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:49:46 Download gff for
BO03607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8578-PA | 463..1191 | 19..747 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:25:58 Download gff for
BO03607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8578-RA | 553..1287 | 14..747 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:12:15 Download gff for
BO03607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8578-RA | 574..1308 | 14..747 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:12:15 Download gff for
BO03607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15846957..15847141 | 130..314 | 100 | -> | Minus |
X | 15847203..15847319 | 14..129 | 97 | | Minus |
X | 15846074..15846347 | 474..747 | 100 | -> | Minus |
X | 15846409..15846567 | 315..473 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:25:58 Download gff for
BO03607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15740107..15740380 | 474..747 | 100 | -> | Minus |
arm_X | 15740442..15740600 | 315..473 | 100 | -> | Minus |
arm_X | 15740990..15741174 | 130..314 | 100 | -> | Minus |
arm_X | 15741236..15741352 | 14..129 | 97 | | Minus |
BO03607.5prime Sequence
734 bp (709 high quality bases) assembled on 2005-12-01
> BO03607.5prime
GAAGTTATCAGTCGACATGGAAAGTATCAGCACCACAGGTCGGCGACGGA
ACAACATGCGAATCAATGCCGAAGACAATGCGCTGGATCAAATTACGAAA
GAGGCGGAAGCGCGACTTGCTGCGCGTCGACAGGCGCGCGCCGAAGCCCG
CGAGATTCGCATGAGGGAGCTGGAGCGGCAGCAGAAAGAGCAGGAGATCA
CCGCCGACCGGGTCTTCGACATGCAAAACTCCACGGCAGTGGGCAGCGAA
ACTCTGTCGGCGCATCCCGTGCGCCTCGCCTACGGCGGACTGTTAAACGT
GACCCGTGCATCAGCATCCCGCCGCAGCAGTGAGGACTCCGTGGAGGAGG
AGGGCAGAAGTTTTCGCGACTTCAAGCACGAGCTTAAGGATGTTGAGGAG
CGGTTTCGCAAAGCCATGATAACGAACGCCCAGTTGGACAACGATCGCGC
CTCGCAGGCCTACGAAGTCAAGCTACTGAAGGACAAATGCGAAATAATGG
AAGAGTCGTATGCACAACTACAGCGCGAGTTCAAGGAGAAGATGCGTGAC
TGCAATGCCCTCAAACGCAACCTGGATCGCGCCAATCTCGAGCTTAAGCT
AGTACAAGGGCAGTTAAACGAGCGCGACTCGTTGATCGCCGAACAGGGCC
TTCTAATTGTAGCAGTTGAAAATGCCGATGGCAGCGATGCCAAGCGAGCT
CTAGTGAGTGTCGAGAATGCCAAGGTGCTGGCCT
BO03607.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8578-PA | 1191 | CG8578-RA | 1..718 | 17..734 | 3590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:30:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8578-RC | 1847 | CG8578-RC | 112..829 | 17..734 | 3590 | 100 | Plus |
CG8578-RB | 1474 | CG8578-RB | 92..809 | 17..734 | 3590 | 100 | Plus |
CG8578-RA | 1615 | CG8578-RA | 112..829 | 17..734 | 3590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:30:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15845982..15846329 | 387..734 | 1740 | 100 | Plus |
X | 23542271 | X | 15845640..15845927 | 102..389 | 1440 | 100 | Plus |
X | 23542271 | X | 15845382..15845469 | 17..104 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:30:18 has no hits.
BO03607.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:45:01 Download gff for
BO03607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8578-PA | 1..718 | 17..734 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:49:47 Download gff for
BO03607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8578-PA | 1..718 | 17..734 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:26:02 Download gff for
BO03607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8578-RA | 88..808 | 12..734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:15:44 Download gff for
BO03607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8578-RA | 109..829 | 12..734 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:15:44 Download gff for
BO03607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15845379..15845468 | 12..103 | 97 | -> | Plus |
X | 15845642..15845926 | 104..388 | 100 | -> | Plus |
X | 15845984..15846329 | 389..734 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:26:02 Download gff for
BO03607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15739412..15739501 | 12..103 | 97 | -> | Plus |
arm_X | 15739675..15739959 | 104..388 | 100 | -> | Plus |
arm_X | 15740017..15740362 | 389..734 | 100 | | Plus |
BO03607.complete Sequence
1225 bp (1225 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629569
> BO03607.complete
GAAGTTATCAGTCGACATGGAAAGTATCAGCACCACAGGTCGGCGACGGA
ACAACATGCGAATCAATGCCGAAGACAATGCGCTGGATCAAATTACGAAA
GAGGCGGAAGCGCGACTTGCTGCGCGTCGACAGGCGCGCGCCGAAGCCCG
CGAGATTCGCATGAGGGAGCTGGAGCGGCAGCAGAAAGAGCAGGAGATCA
CCGCCGACCGGGTCTTCGACATGCAAAACTCCACGGCAGTGGGCAGCGAA
ACTCTGTCGGCGCATCCCGTGCGCCTCGCCTACGGCGGACTGTTAAACGT
GACCCGTGCATCAGCATCCCGCCGCAGCAGTGAGGACTCCGTGGAGGAGG
AGGGCAGAAGTTTTCGCGACTTCAAGCACGAGCTTAAGGATGTTGAGGAG
CGGTTTCGCAAAGCCATGATAACGAACGCCCAGTTGGACAACGATCGCGC
CTCGCAGGCCTACGAAGTCAAGCTACTGAAGGACAAATGCGAAATAATGG
AAGAGTCGTATGCACAACTACAGCGCGAGTTCAAGGAGAAGATGCGTGAC
TGCAATGCCCTCAAACGCAACCTGGATCGCGCCAATCTCGAGCTTAAGCT
AGTACAAGGGCAGTTAAACGAGCGCGACTCGTTGATCGCCGAACAGGGCC
TTCTAATTGTAGCAGTTGAAAATGCCGATGGCAGCGATGCCAAGCGAGCT
CTAGTGAGTGTCGAGAATGCCAAGGTGCTGGCCTCCGTGCAGGGTTCTTT
AGACGTTAGACTTAAAAAGTTCAGTGACGAGAAGCAGCGGCTGCTGGCGG
AGGTGCAGAAGCTTCACGAACAACTTGACGAGTATAAAAGTGATGGAATT
TCCGGACGCCGCAGTCTTTCGCAAGGTTCCTTCGGCGATGAGAATGATTA
CGAGGCCCAACGGGAAACAAACAAAATCATTTCAGACCATAAATATAAGC
TGCAAAAGGCGGAACAGGAAATCGCCAACCTACAGTCGAGCCTAGCGCGC
TCCGAAACTCAAGTAATCCGATACAAAAGCACCGCAGAAGCTGCCGAAAA
GGCGGAGGCTGAGCTGAAGCTGGAGCGCCGCAAGCTGCAACGCGAGCACC
GGGAACTCTTGGAGAAGTTGGAGGAAGCTGAAACGTCCAACAACCATTTG
TTGAAACGCCTCGATAAGTTGAAAAACGCAAAGAGTGCCATTCTAAAGGA
CTTAAGAGCAAGCTTTCTAGACCAT
BO03607.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:11:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8578-RC | 1191 | CG8578-PC | 1..1188 | 17..1204 | 5940 | 100 | Plus |
CG8578-RB | 1191 | CG8578-PB | 1..1188 | 17..1204 | 5940 | 100 | Plus |
CG8578-RA | 1191 | CG8578-PA | 1..1188 | 17..1204 | 5940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8578-RC | 1847 | CG8578-RC | 112..1299 | 17..1204 | 5940 | 100 | Plus |
CG8578-RB | 1474 | CG8578-RB | 92..1279 | 17..1204 | 5940 | 100 | Plus |
CG8578-RA | 1615 | CG8578-RA | 112..1299 | 17..1204 | 5940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15845982..15846347 | 387..752 | 1830 | 100 | Plus |
X | 23542271 | X | 15845640..15845927 | 102..389 | 1440 | 100 | Plus |
X | 23542271 | X | 15846957..15847141 | 912..1096 | 925 | 100 | Plus |
X | 23542271 | X | 15846407..15846568 | 751..912 | 810 | 100 | Plus |
X | 23542271 | X | 15847201..15847310 | 1095..1204 | 550 | 100 | Plus |
X | 23542271 | X | 15845382..15845469 | 17..104 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:11:10 has no hits.
BO03607.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:44:59 Download gff for
BO03607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8578-RA | 1..1191 | 17..1207 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:06:12 Download gff for
BO03607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8578-RA | 88..1287 | 12..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:08 Download gff for
BO03607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8578-RA | 91..1283 | 17..1209 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:00 Download gff for
BO03607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8578-RA | 88..1287 | 12..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:43 Download gff for
BO03607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8578-RA | 112..1304 | 17..1209 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:43 Download gff for
BO03607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15845642..15845926 | 104..388 | 100 | -> | Plus |
X | 15845382..15845468 | 17..103 | 100 | -> | Plus |
X | 15845984..15846347 | 389..752 | 100 | -> | Plus |
X | 15846409..15846567 | 753..911 | 100 | -> | Plus |
X | 15846957..15847141 | 912..1096 | 100 | -> | Plus |
X | 15847203..15847315 | 1097..1209 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:08 Download gff for
BO03607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15739415..15739501 | 17..103 | 100 | -> | Plus |
arm_X | 15739675..15739959 | 104..388 | 100 | -> | Plus |
arm_X | 15740017..15740380 | 389..752 | 100 | -> | Plus |
arm_X | 15740442..15740600 | 753..911 | 100 | -> | Plus |
arm_X | 15740990..15741174 | 912..1096 | 100 | -> | Plus |
arm_X | 15741236..15741348 | 1097..1209 | 98 | | Plus |
BO03607.pep Sequence
Translation from 16 to 1225
> BO03607.pep
MESISTTGRRRNNMRINAEDNALDQITKEAEARLAARRQARAEAREIRMR
ELERQQKEQEITADRVFDMQNSTAVGSETLSAHPVRLAYGGLLNVTRASA
SRRSSEDSVEEEGRSFRDFKHELKDVEERFRKAMITNAQLDNDRASQAYE
VKLLKDKCEIMEESYAQLQREFKEKMRDCNALKRNLDRANLELKLVQGQL
NERDSLIAEQGLLIVAVENADGSDAKRALVSVENAKVLASVQGSLDVRLK
KFSDEKQRLLAEVQKLHEQLDEYKSDGISGRRSLSQGSFGDENDYEAQRE
TNKIISDHKYKLQKAEQEIANLQSSLARSETQVIRYKSTAEAAEKAEAEL
KLERRKLQREHRELLEKLEEAETSNNHLLKRLDKLKNAKSAILKDLRASF
LDH
BO03607.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:31:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8578-PC | 396 | CG8578-PC | 1..396 | 1..396 | 1936 | 100 | Plus |
CG8578-PB | 396 | CG8578-PB | 1..396 | 1..396 | 1936 | 100 | Plus |
CG8578-PA | 396 | CG8578-PA | 1..396 | 1..396 | 1936 | 100 | Plus |
CLIP-190-PN | 1598 | CG5020-PN | 845..1246 | 27..392 | 161 | 22.6 | Plus |
CLIP-190-PR | 1601 | CG5020-PR | 848..1249 | 27..392 | 161 | 22.6 | Plus |