Clone BO03612 Report

Search the DGRC for BO03612

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:36
Well:12
Vector:pDNR-Dual
Associated Gene/Transcriptsno-RA
Protein status:BO03612.pep:
Sequenced Size:610

Clone Sequence Records

BO03612.3prime Sequence

608 bp (607 high quality bases) assembled on 2005-12-01

> BO03612.3prime
ATGGTCTAGAAAGCTTGCTTTAATGCACTTACCCGTTACCATGTTATTCA
GTTTCTTTGGCATATTGCTTAAATTATTATCTAGGGCTACGTTTCTCCCT
GCTATCGGTATCACTGTTAGCTTTCCGCCCAGTGCCACGCCTCCAACTGT
TGGCGTAGCACCCACAGTGGTTGGTGTTGTTGTTACTGTTGTTGTTTTTA
TTATCTGGCTGTTGTTGTTGATGCTATTGTTGTTGTTATTGCTGCTGCCG
TTGGTGCTGATGATATTGTTGTTGTTTCTATTGTTAACACTGGTGACTAT
ATTGTTGTTATTGTTGTTAATGCGCAACAACGATATTGGCTTGATTTTAT
TATTACCAACAACAATTTTCGCCCCACTTATGGGTATGGGTATACCGCCT
TTGGGCGCCACGCCCACTCCGCTACGGATATTTTGGGCGTACGTAACGGC
TGTGTTCAAATCGCGACCTCCACCGGGCACTTCTATTTGATCTGGATCCT
CGTCATCGTCGAAATCGGAGCCCGAATCGTCTTCATCAAAATTGTCATTG
TCGTCATCGGCATCCAACAGTGTTTTTCGTTTTTTCGATGTCATGTCGAC
TGATAACT

BO03612.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1903-PA 576 sno-RA 1..573 594..22 2840 99.8 Minus
CG1903-PB 4644 sno-RB 1..562 594..33 2785 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
sno-RB 6315 CG44436-RB 573..1134 594..33 2795 99.8 Minus
sno-RA 5997 CG44436-RA 573..1134 594..33 2795 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13203699..13204151 22..474 2250 99.8 Plus
X 23542271 X 13206709..13206830 471..592 610 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:32:20 has no hits.

BO03612.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:45:03 Download gff for BO03612.3prime
Subject Subject Range Query Range Percent Splice Strand
sno-PA 1..576 19..594 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:49:50 Download gff for BO03612.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1903-PA 1..576 19..594 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:10:08 Download gff for BO03612.3prime
Subject Subject Range Query Range Percent Splice Strand
sno-RA 568..1142 23..599 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:22:02 Download gff for BO03612.3prime
Subject Subject Range Query Range Percent Splice Strand
sno-RA 568..1142 23..599 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:22:02 Download gff for BO03612.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13206712..13206833 474..596 99   Plus
X 13203695..13204150 19..473 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:10:08 Download gff for BO03612.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13097728..13098183 19..473 99 <- Plus
arm_X 13100745..13100866 474..596 99   Plus

BO03612.5prime Sequence

608 bp (607 high quality bases) assembled on 2005-12-01

> BO03612.5prime
GAAGTTATCAGTCGACATGACATCGAAAAAACGAAAAACACTGTTGGATG
CCGATGACGACAATGACAATTTTGATGAAGACGATTCGGGCTCCGATTTC
GACGATGACGAGGATCCAGATCAAATAGAAGTGCCCGGTGGAGGTCGCGA
TTTGAACACAGCCGTTACGTACGCCCAAAATATCCGTAGCGGAGTGGGCG
TGGCGCCCAAAGGCGGTATACCCATACCCATAAGTGGGGCGAAAATTGTT
GTTGGTAATAATAAAATCAAGCCAATATCGTTGTTGCGCATTAACAACAA
TAACAACAATATAGTCACCAGTGTTAACAATAGAAACAACAACAATATCA
TCAGCACCAACGGCAGCAGCAATAACAACAACAATAGCATCAACAACAAC
AGCCAGATAATAAAAACAACAACAGTAACAACAACACCAACCACTGTGGG
TGCTACGCCAACAGTTGGAGGCGTGGCACTGGGCGGAAAGCTAACAGTGA
TACCGATAGCAGGGAGAAACGTAGCCCTAGATAATAATTTAAGCAATATG
CCAAAGAAACTGAATAACATGGTAACGGGTAAGTGCATTAAAGCAAGCTT
TCTAGACC

BO03612.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG1903-PA 576 sno-RA 1..573 17..589 2840 99.8 Plus
CG1903-PB 4644 sno-RB 1..562 17..578 2785 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
sno-RB 6315 CG44436-RB 573..1134 17..578 2795 99.8 Plus
sno-RA 5997 CG44436-RA 573..1134 17..578 2795 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:17:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13203699..13204151 589..137 2250 99.8 Minus
X 23542271 X 13206709..13206830 140..19 610 100 Minus
Blast to na_te.dros performed on 2015-02-11 02:17:25 has no hits.

BO03612.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:45:04 Download gff for BO03612.5prime
Subject Subject Range Query Range Percent Splice Strand
sno-PA 1..576 17..592 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:49:52 Download gff for BO03612.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1903-PA 1..576 17..592 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:45:28 Download gff for BO03612.5prime
Subject Subject Range Query Range Percent Splice Strand
sno-RA 568..1142 12..588 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:25:57 Download gff for BO03612.5prime
Subject Subject Range Query Range Percent Splice Strand
sno-RA 568..1142 12..588 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:25:57 Download gff for BO03612.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13203695..13204150 138..592 99 <- Minus
X 13206712..13206833 15..137 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:45:28 Download gff for BO03612.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13097728..13098183 138..592 99 <- Minus
arm_X 13100745..13100866 15..137 99   Minus

BO03612.complete Sequence

610 bp (610 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629570

> BO03612.complete
GAAGTTATCAGTCGACATGACATCGAAAAAACGAAAAACACTGTTGGATG
CCGATGACGACAATGACAATTTTGATGAAGACGATTCGGGCTCCGATTTC
GACGATGACGAGGATCCAGATCAAATAGAAGTGCCCGGTGGAGGTCGCGA
TTTGAACACAGCCGTTACGTACGCCCAAAATATCCGTAGCGGAGTGGGCG
TGGCGCCCAAAGGCGGTATACCCATACCCATAAGTGGGGCGAAAATTGTT
GTTGGTAATAATAAAATCAAGCCAATATCGTTGTTGCGCATTAACAACAA
TAACAACAATATAGTCACCAGTGTTAACAATAGAAACAACAACAATATCA
TCAGCACCAACGGCAGCAGCAATAACAACAACAATAGCATCAACAACAAC
AGCCAGATAATAAAAACAACAACAGTAACAACAACACCAACCACTGTGGG
TGCTACGCCAACAGTTGGAGGCGTGGCACTGGGCGGAAAGCTAACAGTGA
TACCGATAGCAGGGAGAAACGTAGCCCTAGATAATAATTTAAGCAATATG
CCAAAGAAACTGAATAACATGGTAACGGGTAAGTGCATTAAAGCAAGCTT
TCTAGACCAT

BO03612.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
sno-RB 4962 CG44436-PB 1..562 17..578 2795 99.8 Plus
sno-RA 4644 CG44436-PA 1..562 17..578 2795 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
sno-RB 6315 CG44436-RB 573..1134 17..578 2795 99.8 Plus
sno-RA 5997 CG44436-RA 573..1134 17..578 2795 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13203699..13204151 589..137 2250 99.8 Minus
X 23542271 X 13206709..13206830 140..19 610 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:25:34 has no hits.

BO03612.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:01 Download gff for BO03612.complete
Subject Subject Range Query Range Percent Splice Strand
sno-RA 1..576 17..592 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:15:35 Download gff for BO03612.complete
Subject Subject Range Query Range Percent Splice Strand
sno-RA 560..1140 12..592 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:32 Download gff for BO03612.complete
Subject Subject Range Query Range Percent Splice Strand
sno-RA 573..1142 17..588 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:01 Download gff for BO03612.complete
Subject Subject Range Query Range Percent Splice Strand
sno-RA 560..1140 12..592 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:08 Download gff for BO03612.complete
Subject Subject Range Query Range Percent Splice Strand
sno-RA 573..1142 17..588 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:08 Download gff for BO03612.complete
Subject Subject Range Query Range Percent Splice Strand
X 13203693..13204150 138..594 99 <- Minus
X 13206712..13206831 17..137 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:32 Download gff for BO03612.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13100745..13100864 17..137 99   Minus
arm_X 13097726..13098183 138..594 99 <- Minus

BO03612.pep Sequence

Translation from 16 to 610

> BO03612.pep
MTSKKRKTLLDADDDNDNFDEDDSGSDFDDDEDPDQIEVPGGGRDLNTAV
TYAQNIRSGVGVAPKGGIPIPISGAKIVVGNNKIKPISLLRINNNNNNIV
TSVNNRNNNNIISTNGSSNNNNNSINNNSQIIKTTTVTTTPTTVGATPTV
GGVALGGKLTVIPIAGRNVALDNNLSNMPKKLNNMVTGKCIKASFLDH

BO03612.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
sno-PA 1547 CG44436-PA 1..187 1..187 961 100 Plus
sno-PB 1653 CG44436-PB 1..187 1..187 961 100 Plus