Clone Sequence Records
BO03612.3prime Sequence
608 bp (607 high quality bases) assembled on 2005-12-01
> BO03612.3prime
ATGGTCTAGAAAGCTTGCTTTAATGCACTTACCCGTTACCATGTTATTCA
GTTTCTTTGGCATATTGCTTAAATTATTATCTAGGGCTACGTTTCTCCCT
GCTATCGGTATCACTGTTAGCTTTCCGCCCAGTGCCACGCCTCCAACTGT
TGGCGTAGCACCCACAGTGGTTGGTGTTGTTGTTACTGTTGTTGTTTTTA
TTATCTGGCTGTTGTTGTTGATGCTATTGTTGTTGTTATTGCTGCTGCCG
TTGGTGCTGATGATATTGTTGTTGTTTCTATTGTTAACACTGGTGACTAT
ATTGTTGTTATTGTTGTTAATGCGCAACAACGATATTGGCTTGATTTTAT
TATTACCAACAACAATTTTCGCCCCACTTATGGGTATGGGTATACCGCCT
TTGGGCGCCACGCCCACTCCGCTACGGATATTTTGGGCGTACGTAACGGC
TGTGTTCAAATCGCGACCTCCACCGGGCACTTCTATTTGATCTGGATCCT
CGTCATCGTCGAAATCGGAGCCCGAATCGTCTTCATCAAAATTGTCATTG
TCGTCATCGGCATCCAACAGTGTTTTTCGTTTTTTCGATGTCATGTCGAC
TGATAACT
BO03612.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1903-PA | 576 | sno-RA | 1..573 | 594..22 | 2840 | 99.8 | Minus |
CG1903-PB | 4644 | sno-RB | 1..562 | 594..33 | 2785 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:32:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sno-RB | 6315 | CG44436-RB | 573..1134 | 594..33 | 2795 | 99.8 | Minus |
sno-RA | 5997 | CG44436-RA | 573..1134 | 594..33 | 2795 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:32:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13203699..13204151 | 22..474 | 2250 | 99.8 | Plus |
X | 23542271 | X | 13206709..13206830 | 471..592 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:32:20 has no hits.
BO03612.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:45:03 Download gff for
BO03612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-PA | 1..576 | 19..594 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:49:50 Download gff for
BO03612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1903-PA | 1..576 | 19..594 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:10:08 Download gff for
BO03612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-RA | 568..1142 | 23..599 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:22:02 Download gff for
BO03612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-RA | 568..1142 | 23..599 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:22:02 Download gff for
BO03612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13206712..13206833 | 474..596 | 99 | | Plus |
X | 13203695..13204150 | 19..473 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:10:08 Download gff for
BO03612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13097728..13098183 | 19..473 | 99 | <- | Plus |
arm_X | 13100745..13100866 | 474..596 | 99 | | Plus |
BO03612.5prime Sequence
608 bp (607 high quality bases) assembled on 2005-12-01
> BO03612.5prime
GAAGTTATCAGTCGACATGACATCGAAAAAACGAAAAACACTGTTGGATG
CCGATGACGACAATGACAATTTTGATGAAGACGATTCGGGCTCCGATTTC
GACGATGACGAGGATCCAGATCAAATAGAAGTGCCCGGTGGAGGTCGCGA
TTTGAACACAGCCGTTACGTACGCCCAAAATATCCGTAGCGGAGTGGGCG
TGGCGCCCAAAGGCGGTATACCCATACCCATAAGTGGGGCGAAAATTGTT
GTTGGTAATAATAAAATCAAGCCAATATCGTTGTTGCGCATTAACAACAA
TAACAACAATATAGTCACCAGTGTTAACAATAGAAACAACAACAATATCA
TCAGCACCAACGGCAGCAGCAATAACAACAACAATAGCATCAACAACAAC
AGCCAGATAATAAAAACAACAACAGTAACAACAACACCAACCACTGTGGG
TGCTACGCCAACAGTTGGAGGCGTGGCACTGGGCGGAAAGCTAACAGTGA
TACCGATAGCAGGGAGAAACGTAGCCCTAGATAATAATTTAAGCAATATG
CCAAAGAAACTGAATAACATGGTAACGGGTAAGTGCATTAAAGCAAGCTT
TCTAGACC
BO03612.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1903-PA | 576 | sno-RA | 1..573 | 17..589 | 2840 | 99.8 | Plus |
CG1903-PB | 4644 | sno-RB | 1..562 | 17..578 | 2785 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:17:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sno-RB | 6315 | CG44436-RB | 573..1134 | 17..578 | 2795 | 99.8 | Plus |
sno-RA | 5997 | CG44436-RA | 573..1134 | 17..578 | 2795 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:17:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13203699..13204151 | 589..137 | 2250 | 99.8 | Minus |
X | 23542271 | X | 13206709..13206830 | 140..19 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:17:25 has no hits.
BO03612.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:45:04 Download gff for
BO03612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-PA | 1..576 | 17..592 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:49:52 Download gff for
BO03612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1903-PA | 1..576 | 17..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:45:28 Download gff for
BO03612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-RA | 568..1142 | 12..588 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:25:57 Download gff for
BO03612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-RA | 568..1142 | 12..588 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:25:57 Download gff for
BO03612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13203695..13204150 | 138..592 | 99 | <- | Minus |
X | 13206712..13206833 | 15..137 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:45:28 Download gff for
BO03612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13097728..13098183 | 138..592 | 99 | <- | Minus |
arm_X | 13100745..13100866 | 15..137 | 99 | | Minus |
BO03612.complete Sequence
610 bp (610 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629570
> BO03612.complete
GAAGTTATCAGTCGACATGACATCGAAAAAACGAAAAACACTGTTGGATG
CCGATGACGACAATGACAATTTTGATGAAGACGATTCGGGCTCCGATTTC
GACGATGACGAGGATCCAGATCAAATAGAAGTGCCCGGTGGAGGTCGCGA
TTTGAACACAGCCGTTACGTACGCCCAAAATATCCGTAGCGGAGTGGGCG
TGGCGCCCAAAGGCGGTATACCCATACCCATAAGTGGGGCGAAAATTGTT
GTTGGTAATAATAAAATCAAGCCAATATCGTTGTTGCGCATTAACAACAA
TAACAACAATATAGTCACCAGTGTTAACAATAGAAACAACAACAATATCA
TCAGCACCAACGGCAGCAGCAATAACAACAACAATAGCATCAACAACAAC
AGCCAGATAATAAAAACAACAACAGTAACAACAACACCAACCACTGTGGG
TGCTACGCCAACAGTTGGAGGCGTGGCACTGGGCGGAAAGCTAACAGTGA
TACCGATAGCAGGGAGAAACGTAGCCCTAGATAATAATTTAAGCAATATG
CCAAAGAAACTGAATAACATGGTAACGGGTAAGTGCATTAAAGCAAGCTT
TCTAGACCAT
BO03612.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:25:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sno-RB | 4962 | CG44436-PB | 1..562 | 17..578 | 2795 | 99.8 | Plus |
sno-RA | 4644 | CG44436-PA | 1..562 | 17..578 | 2795 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:25:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sno-RB | 6315 | CG44436-RB | 573..1134 | 17..578 | 2795 | 99.8 | Plus |
sno-RA | 5997 | CG44436-RA | 573..1134 | 17..578 | 2795 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:25:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13203699..13204151 | 589..137 | 2250 | 99.8 | Minus |
X | 23542271 | X | 13206709..13206830 | 140..19 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:25:34 has no hits.
BO03612.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:45:01 Download gff for
BO03612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-RA | 1..576 | 17..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:15:35 Download gff for
BO03612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-RA | 560..1140 | 12..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:32 Download gff for
BO03612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-RA | 573..1142 | 17..588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:45:01 Download gff for
BO03612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-RA | 560..1140 | 12..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:08 Download gff for
BO03612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-RA | 573..1142 | 17..588 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:08 Download gff for
BO03612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13203693..13204150 | 138..594 | 99 | <- | Minus |
X | 13206712..13206831 | 17..137 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:32 Download gff for
BO03612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13100745..13100864 | 17..137 | 99 | | Minus |
arm_X | 13097726..13098183 | 138..594 | 99 | <- | Minus |
BO03612.pep Sequence
Translation from 16 to 610
> BO03612.pep
MTSKKRKTLLDADDDNDNFDEDDSGSDFDDDEDPDQIEVPGGGRDLNTAV
TYAQNIRSGVGVAPKGGIPIPISGAKIVVGNNKIKPISLLRINNNNNNIV
TSVNNRNNNNIISTNGSSNNNNNSINNNSQIIKTTTVTTTPTTVGATPTV
GGVALGGKLTVIPIAGRNVALDNNLSNMPKKLNNMVTGKCIKASFLDH
BO03612.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:31:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sno-PA | 1547 | CG44436-PA | 1..187 | 1..187 | 961 | 100 | Plus |
sno-PB | 1653 | CG44436-PB | 1..187 | 1..187 | 961 | 100 | Plus |