Clone Sequence Records
BO03617.3prime Sequence
737 bp (696 high quality bases) assembled on 2005-12-01
> BO03617.3prime
ATGGTCTAGAAAGCTTGCTTTGGTGAAGCTGTACTGATTATCGACGGCCC
GTCCGGTGCACTCGGCTCCTCCACTGGATCCCGATCCGCCTCCTGCTCCG
CCGCTGTTGCTGCCGCCATCGCTGGGATGCCGGTTGCCGGAGGAACCCGC
CTGATGGTGGGCAGCTGCCTGAAGGGAGGCGTTCGAAGCCCGCAGATGTG
GCTGGTCCAGGAAATTCTGGGCCGGTGGCGGTGATCCGTGCACTGTTAGC
GTTGTGGGATCCAAATGGAAATAGACTTGCTCCGGAAAATAGACGTGTGT
TGGCTCCTGTGGCAGTTCGATTTCATTTGTCTTTAGGCGAACACTCAAAT
TCATGGTAATCACTTCGTTGCAATGTCTCGGCGACGGATGGCCACCGCCA
GCAGCTCCCGATGCAGTTCCTCCCGCCGCATTCGATGCCGTCGATGAACC
CTGACCATTATCGTAGCCATTGCCGTTCCCATTGCCATTCCCATTTGTCG
AAAGATCGTTGAGTTGTCCTGAGTCATGATTTGCTGCCGTCGTCGGGTCA
TTCAGTCTGCTGTGTGAGTGCACCCATTCGGTAAGAGTCACATCCGAAGT
GCCGCCCGATTCCAGTGGTATCGGGTTGTGGCGGAAGTGTTCGAGCATTT
CCTGGATCGAGGGAAACCACAGGTGCTGCACCCGACACTGACCCTTCTCC
GAAATGGTGAGCCGCAAATGCTTGGCTCGTCCTTGGA
BO03617.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17367-PC | 2172 | Lnk-RC | 1454..2169 | 737..22 | 3580 | 100 | Minus |
CG17367-PB | 2172 | Lnk-RB | 1454..2169 | 737..22 | 3580 | 100 | Minus |
CG17367-PA | 2172 | Lnk-RA | 1454..2169 | 737..22 | 3580 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:38:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lnk-RD | 3128 | CG17367-RD | 1942..2661 | 737..18 | 3585 | 99.9 | Minus |
Lnk-RA | 3113 | CG17367-RA | 1927..2646 | 737..18 | 3585 | 99.9 | Minus |
Lnk-RB | 2918 | CG17367-RB | 1732..2451 | 737..18 | 3585 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:38:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25891670..25892034 | 737..373 | 1825 | 100 | Minus |
3R | 32079331 | 3R | 25892445..25892803 | 376..18 | 1765 | 99.4 | Minus |
Blast to na_te.dros performed 2015-02-12 10:38:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 8580..8682 | 122..21 | 116 | 58.3 | Minus |
BO03617.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:45:11 Download gff for
BO03617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lnk-PA | 1455..2172 | 19..736 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:50:02 Download gff for
BO03617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17367-PA | 1455..2172 | 19..736 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:50:41 Download gff for
BO03617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lnk-RB | 1733..2456 | 13..736 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:15:30 Download gff for
BO03617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lnk-RB | 1733..2456 | 13..736 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:15:30 Download gff for
BO03617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25891671..25892034 | 373..736 | 100 | -> | Minus |
3R | 25892449..25892808 | 13..372 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:50:41 Download gff for
BO03617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21717393..21717756 | 373..736 | 100 | -> | Minus |
arm_3R | 21718171..21718530 | 13..372 | 98 | | Minus |
BO03617.5prime Sequence
824 bp (669 high quality bases) assembled on 2005-12-01
> BO03617.5prime
GAAGTTATCAGTCGACATGGGTGGCAATAGCACAGGAGCGAATACGAGCG
CCTTCAGCGCTGGCGGTTACATTGGGCCCACGTCGGCCAGCAGTCATCAC
AGCCTGGGAACTTCATCGGCGGCAGCGGCAGCAGCAGCAGGAAGTGACCT
GATACCCGCACCAATTGGCACGGGCAACGCCATGGGAGTGTCTTCGTATG
CATACGGTGGAACCAGTTGGGAGGAGTTCTGCGAACGACACGCCAGAGTG
GCTGCCTCGGATTTCGCCAAGGCGTGCATCACGTACATTAATGGCAATCT
GCCGCCGGAGGAGGCGAGGAACATCCAGCATCGCAGCTTTGCTCAGAAAT
TTGTGGAATCCTTTTCGGCGCACTACGACACGGAGTTCTTCAAGCGGAGG
AGCACTCTTAAATCAGGTGCGGGCTCGCTGGACTTCGAGGAGGAGCACGA
GGTGCCAAAACTGCTCTCAAAGTCTCTATTAAGACGACTATCATTCAAAG
GACTGCGCAAGGGCAAGGCCTTCTTCCACAAGAACTCGGATGACTTGGAT
GGCAGCGGTGGCAGCGGCAAGCAGAGCAAGACGAAGCTGGCCAAGATCGT
TGTGGAGTGCCGGAAGGAGGGCACAGTGAACAACCTGACGCCGGAAAGTC
TGGATCAACCGACGGGCTCCCAAAAGTGGGAGAAGTGTCGACTTGTACTG
GTCAAGGCCGTGGGTGGCTACATGCTAGAGTTTTACACGCCGCACAAGGC
GACTAAGCCGCGCAGTGGAGTCTTTTGTTTCCTCATCTCGGAGGCTCGCG
AAACAACGGCACTTGAGATGCCGG
BO03617.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17367-PC | 2172 | Lnk-RC | 1..808 | 17..824 | 4040 | 100 | Plus |
CG17367-PB | 2172 | Lnk-RB | 1..808 | 17..824 | 4040 | 100 | Plus |
CG17367-PA | 2172 | Lnk-RA | 1..808 | 17..824 | 4040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:32:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lnk-RF | 2951 | CG17367-RF | 279..1086 | 17..824 | 4040 | 100 | Plus |
Lnk-RA | 3113 | CG17367-RA | 474..1281 | 17..824 | 4040 | 100 | Plus |
Lnk-RB | 2918 | CG17367-RB | 279..1086 | 17..824 | 4040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25889778..25890279 | 17..518 | 2510 | 100 | Plus |
3R | 32079331 | 3R | 25890716..25891024 | 516..824 | 1545 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 04:32:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 131..202 | 78..146 | 118 | 66.7 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9161..9232 | 78..146 | 118 | 66.7 | Plus |
BO03617.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:45:12 Download gff for
BO03617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lnk-PA | 1..808 | 17..824 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:50:03 Download gff for
BO03617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17367-PA | 1..808 | 17..824 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:10:09 Download gff for
BO03617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lnk-RB | 279..1086 | 17..824 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:22:35 Download gff for
BO03617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lnk-RB | 279..1086 | 17..824 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:22:35 Download gff for
BO03617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25889778..25890278 | 17..517 | 100 | -> | Plus |
3R | 25890718..25891024 | 518..824 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:10:09 Download gff for
BO03617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21715500..21716000 | 17..517 | 100 | -> | Plus |
arm_3R | 21716440..21716746 | 518..824 | 100 | | Plus |
BO03617.complete Sequence
2206 bp assembled on 2007-10-05
GenBank Submission: FJ629571
> BO03617.complete
GAAGTTATCAGTCGACATGGGTGGCAATAGCACAGGAGCGAATACGAGCG
CCTTCAGCGCTGGCGGTTACATTGGGCCCACGTCGGCCAGCAGTCATCAC
AGCCTGGGAACTTCATCGGCGGCAGCGGCAGCAGCAGCAGGAAGTGACCT
GATACCCGCACCAATTGGCACGGGCAACGCCATGGGAGTGTCTTCGTATG
CATACGGTGGAACCAGTTGGGAGGAGTTCTGCGAACGACACGCCAGAGTG
GCTGCCTCGGATTTCGCCAAGGCGTGCATCACGTACATTAATGGCAATCT
GCCGCCGGAGGAGGCGAGGAACATCCAGCATCGCAGCTTTGCTCAGAAAT
TTGTGGAATCCTTTTCGGCGCACTACGACACGGAGTTCTTCAAGCGGAGG
AGCACTCTTAAATCAGGTGCGGGCTCGCTGGACTTCGAGGAGGAGCACGA
GGTGCCAAAACTGCTCTCAAAGTCTCTATTAAGACGACTATCATTCAAAG
GACTGCGCAAGGGCAAGGCCTTCTTCCACAAGAACTCGGATGACTTGGAT
GGCAGCGGTGGCAGCGGCAAGCAGAGCAAGACGAAGCTGGCCAAGATCGT
TGTGGAGTGCCGGAAGGAGGGCACAGTGAACAACCTGACGCCGGAAAGTC
TGGATCAACCGACGGGCTCCCAAAAGTGGGAGAAGTGTCGACTTGTACTG
GTCAAGGCCGTGGGTGGCTACATGCTAGAGTTTTACACGCCGCACAAGGC
GACTAAGCCGCGCAGTGGAGTCTTTTGTTTCCTCATCTCGGAGGCTCGCG
AAACAACGGCACTTGAGATGCCGGACAGGCTGAACACATTCGTCCTCAAG
GCAGACAACAACATGGAGTATGTGATTGAGGCGGAGAGCGCGGAGGAGAT
GCGGAGTTGGCTAGCCACAATACGGTACTGCATGCGAACGCCACCCACTC
AGCAGCCAACGATCGAGTCGGATGGTGTTATGGCGTCCGCCATGCAAACA
TCGCCGACACTTCCGAGTCCCAATCCCATTGGTGGGATTCAGAATCCGCA
GTACCAGCAGCAGCGCGGCTCGAATGGCAATCTGGTGGGAGGTGGAGCTC
CGCTCACCTCATCGCTGTCTGCAGACAGTGCTTTGGGCCAGGGAGGAGCC
ACTTCTGCCAGCGAACTAAATGTCATCAACGAATTGGGCACCTCACCGAC
CTCCGGGCCACCTGACATACCTGTAAGACCCCATCGAGGTGAACAGCGCC
TGTCCGCCTCAAGCAACTTCGATGGCATCGAGGGCACGGAAAATGATGCA
GATGTGGCGGATCTGACGGCTGAGATGAGCGTGTTTCCCTGGTTCCACGG
CACACTGACGCGATCAGAAGCTGCCAGAATGGTACTCCATTCGGATGCAG
CCGGACATGGATACTTTTTGGTGCGACAGAGCGAAACGCGCCGCGGCGAG
TTCGTTCTGACCTTTAACTTCCAAGGACGAGCCAAGCATTTGCGGCTCAC
CATTTCGGAGAAGGGTCAGTGTCGGGTGCAGCACCTGTGGTTTCCCTCGA
TCCAGGAAATGCTCGAACACTTCCGCCACAACCCGATACCACTGGAATCG
GGCGGCACTTCGGATGTGACTCTTACCGAATGGGTGCACTCACACAGCAG
ACTGAATGACCCGACGACGGCAGCAAATCATGACTCAGGACAACTCAACG
ATCTTTCGACAAATGGGAATGGCAATGGGAACGGCAATGGCTACGATAAT
GGTCAGGGTTCATCGACGGCATCGAATGCGGCGGGAGGAACTGCATCGGG
AGCTGCTGGCGGTGGCCATCCGTCGCCGAGACATTGCAACGAAGTGATTA
CCATGAATTTGAGTGTTCGCCTAAAGACAAATGAAATCGAACTGCCACAG
GAGCCAACACACGTCTATTTTCCGGAGCAAGTCTATTTCCATTTGGATCC
CACAACGCTAACAGTGCACGGATCACCGCCACCGGCCCAGAATTTCCTGG
ACCAGCCACATCTGCGGGCTTCGAACGCCTCCCTTCAGGCAGCTGCCCAC
CATCAGGCGGGTTCCTCCGGCAACCGGCATCCCAGCGATGGCGGCAGCAA
CAGCGGCGGAGCAGGAGGCGGATCGGGATCCAGTGGAGGAGCCGAGTGCA
CCGGACGGGCCGTCGATAATCAGTACAGCTTCACCAAAGCAAGCTTTCTA
GACCAT
BO03617.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:04:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lnk-RA | 2172 | CG17367-PA | 1..2169 | 17..2185 | 10845 | 100 | Plus |
Lnk-RB | 2172 | CG17367-PB | 1..2169 | 17..2185 | 10845 | 100 | Plus |
Lnk-RC | 2172 | CG17367-PC | 1..2169 | 17..2185 | 10845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:04:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lnk-RA | 3113 | CG17367-RA | 474..2646 | 17..2189 | 10850 | 100 | Plus |
Lnk-RB | 2918 | CG17367-RB | 279..2451 | 17..2189 | 10850 | 100 | Plus |
Lnk-RC | 3287 | CG17367-RC | 648..2820 | 17..2189 | 10850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:04:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25890716..25892034 | 516..1834 | 6595 | 100 | Plus |
3R | 32079331 | 3R | 25889778..25890279 | 17..518 | 2510 | 100 | Plus |
3R | 32079331 | 3R | 25892445..25892803 | 1831..2189 | 1765 | 99.4 | Plus |
Blast to na_te.dros performed 2014-11-27 20:04:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 131..202 | 78..146 | 118 | 66.7 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9161..9232 | 78..146 | 118 | 66.7 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 8580..8682 | 2085..2186 | 116 | 58.3 | Plus |
BO03617.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:23 Download gff for
BO03617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lnk-RA | 1..2172 | 17..2188 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:18:43 Download gff for
BO03617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lnk-RA | 399..2576 | 17..2194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:31 Download gff for
BO03617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lnk-RC | 648..2820 | 17..2190 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:23 Download gff for
BO03617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lnk-RA | 399..2576 | 17..2194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:14 Download gff for
BO03617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lnk-RC | 648..2820 | 17..2190 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:14 Download gff for
BO03617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25889778..25890278 | 17..517 | 100 | -> | Plus |
3R | 25890718..25892034 | 518..1834 | 100 | -> | Plus |
3R | 25892449..25892803 | 1835..2190 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:31 Download gff for
BO03617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21715500..21716000 | 17..517 | 100 | -> | Plus |
arm_3R | 21716440..21717756 | 518..1834 | 100 | -> | Plus |
arm_3R | 21718171..21718525 | 1835..2190 | 99 | | Plus |
BO03617.pep Sequence
Translation from 16 to 2206
> BO03617.pep
MGGNSTGANTSAFSAGGYIGPTSASSHHSLGTSSAAAAAAAGSDLIPAPI
GTGNAMGVSSYAYGGTSWEEFCERHARVAASDFAKACITYINGNLPPEEA
RNIQHRSFAQKFVESFSAHYDTEFFKRRSTLKSGAGSLDFEEEHEVPKLL
SKSLLRRLSFKGLRKGKAFFHKNSDDLDGSGGSGKQSKTKLAKIVVECRK
EGTVNNLTPESLDQPTGSQKWEKCRLVLVKAVGGYMLEFYTPHKATKPRS
GVFCFLISEARETTALEMPDRLNTFVLKADNNMEYVIEAESAEEMRSWLA
TIRYCMRTPPTQQPTIESDGVMASAMQTSPTLPSPNPIGGIQNPQYQQQR
GSNGNLVGGGAPLTSSLSADSALGQGGATSASELNVINELGTSPTSGPPD
IPVRPHRGEQRLSASSNFDGIEGTENDADVADLTAEMSVFPWFHGTLTRS
EAARMVLHSDAAGHGYFLVRQSETRRGEFVLTFNFQGRAKHLRLTISEKG
QCRVQHLWFPSIQEMLEHFRHNPIPLESGGTSDVTLTEWVHSHSRLNDPT
TAANHDSGQLNDLSTNGNGNGNGNGYDNGQGSSTASNAAGGTASGAAGGG
HPSPRHCNEVITMNLSVRLKTNEIELPQEPTHVYFPEQVYFHLDPTTLTV
HGSPPPAQNFLDQPHLRASNASLQAAAHHQAGSSGNRHPSDGGSNSGGAG
GGSGSSGGAECTGRAVDNQYSFTKASFLDH
BO03617.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:23:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lnk-PA | 723 | CG17367-PA | 1..723 | 1..723 | 3807 | 100 | Plus |
Lnk-PB | 723 | CG17367-PB | 1..723 | 1..723 | 3807 | 100 | Plus |
Lnk-PC | 723 | CG17367-PC | 1..723 | 1..723 | 3807 | 100 | Plus |
Lnk-PD | 728 | CG17367-PD | 1..728 | 1..723 | 3791 | 99.3 | Plus |
Lnk-PF | 608 | CG17367-PF | 1..606 | 1..606 | 3178 | 100 | Plus |