Clone BO03617 Report

Search the DGRC for BO03617

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:36
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptLnk-RA
Protein status:BO03617.pep: validated full length
Sequenced Size:2206

Clone Sequence Records

BO03617.3prime Sequence

737 bp (696 high quality bases) assembled on 2005-12-01

> BO03617.3prime
ATGGTCTAGAAAGCTTGCTTTGGTGAAGCTGTACTGATTATCGACGGCCC
GTCCGGTGCACTCGGCTCCTCCACTGGATCCCGATCCGCCTCCTGCTCCG
CCGCTGTTGCTGCCGCCATCGCTGGGATGCCGGTTGCCGGAGGAACCCGC
CTGATGGTGGGCAGCTGCCTGAAGGGAGGCGTTCGAAGCCCGCAGATGTG
GCTGGTCCAGGAAATTCTGGGCCGGTGGCGGTGATCCGTGCACTGTTAGC
GTTGTGGGATCCAAATGGAAATAGACTTGCTCCGGAAAATAGACGTGTGT
TGGCTCCTGTGGCAGTTCGATTTCATTTGTCTTTAGGCGAACACTCAAAT
TCATGGTAATCACTTCGTTGCAATGTCTCGGCGACGGATGGCCACCGCCA
GCAGCTCCCGATGCAGTTCCTCCCGCCGCATTCGATGCCGTCGATGAACC
CTGACCATTATCGTAGCCATTGCCGTTCCCATTGCCATTCCCATTTGTCG
AAAGATCGTTGAGTTGTCCTGAGTCATGATTTGCTGCCGTCGTCGGGTCA
TTCAGTCTGCTGTGTGAGTGCACCCATTCGGTAAGAGTCACATCCGAAGT
GCCGCCCGATTCCAGTGGTATCGGGTTGTGGCGGAAGTGTTCGAGCATTT
CCTGGATCGAGGGAAACCACAGGTGCTGCACCCGACACTGACCCTTCTCC
GAAATGGTGAGCCGCAAATGCTTGGCTCGTCCTTGGA

BO03617.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG17367-PC 2172 Lnk-RC 1454..2169 737..22 3580 100 Minus
CG17367-PB 2172 Lnk-RB 1454..2169 737..22 3580 100 Minus
CG17367-PA 2172 Lnk-RA 1454..2169 737..22 3580 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
Lnk-RD 3128 CG17367-RD 1942..2661 737..18 3585 99.9 Minus
Lnk-RA 3113 CG17367-RA 1927..2646 737..18 3585 99.9 Minus
Lnk-RB 2918 CG17367-RB 1732..2451 737..18 3585 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25891670..25892034 737..373 1825 100 Minus
3R 32079331 3R 25892445..25892803 376..18 1765 99.4 Minus
Blast to na_te.dros performed 2015-02-12 10:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 8580..8682 122..21 116 58.3 Minus

BO03617.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:45:11 Download gff for BO03617.3prime
Subject Subject Range Query Range Percent Splice Strand
Lnk-PA 1455..2172 19..736 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:50:02 Download gff for BO03617.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17367-PA 1455..2172 19..736 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:50:41 Download gff for BO03617.3prime
Subject Subject Range Query Range Percent Splice Strand
Lnk-RB 1733..2456 13..736 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:15:30 Download gff for BO03617.3prime
Subject Subject Range Query Range Percent Splice Strand
Lnk-RB 1733..2456 13..736 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:15:30 Download gff for BO03617.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25891671..25892034 373..736 100 -> Minus
3R 25892449..25892808 13..372 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:50:41 Download gff for BO03617.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21717393..21717756 373..736 100 -> Minus
arm_3R 21718171..21718530 13..372 98   Minus

BO03617.5prime Sequence

824 bp (669 high quality bases) assembled on 2005-12-01

> BO03617.5prime
GAAGTTATCAGTCGACATGGGTGGCAATAGCACAGGAGCGAATACGAGCG
CCTTCAGCGCTGGCGGTTACATTGGGCCCACGTCGGCCAGCAGTCATCAC
AGCCTGGGAACTTCATCGGCGGCAGCGGCAGCAGCAGCAGGAAGTGACCT
GATACCCGCACCAATTGGCACGGGCAACGCCATGGGAGTGTCTTCGTATG
CATACGGTGGAACCAGTTGGGAGGAGTTCTGCGAACGACACGCCAGAGTG
GCTGCCTCGGATTTCGCCAAGGCGTGCATCACGTACATTAATGGCAATCT
GCCGCCGGAGGAGGCGAGGAACATCCAGCATCGCAGCTTTGCTCAGAAAT
TTGTGGAATCCTTTTCGGCGCACTACGACACGGAGTTCTTCAAGCGGAGG
AGCACTCTTAAATCAGGTGCGGGCTCGCTGGACTTCGAGGAGGAGCACGA
GGTGCCAAAACTGCTCTCAAAGTCTCTATTAAGACGACTATCATTCAAAG
GACTGCGCAAGGGCAAGGCCTTCTTCCACAAGAACTCGGATGACTTGGAT
GGCAGCGGTGGCAGCGGCAAGCAGAGCAAGACGAAGCTGGCCAAGATCGT
TGTGGAGTGCCGGAAGGAGGGCACAGTGAACAACCTGACGCCGGAAAGTC
TGGATCAACCGACGGGCTCCCAAAAGTGGGAGAAGTGTCGACTTGTACTG
GTCAAGGCCGTGGGTGGCTACATGCTAGAGTTTTACACGCCGCACAAGGC
GACTAAGCCGCGCAGTGGAGTCTTTTGTTTCCTCATCTCGGAGGCTCGCG
AAACAACGGCACTTGAGATGCCGG

BO03617.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG17367-PC 2172 Lnk-RC 1..808 17..824 4040 100 Plus
CG17367-PB 2172 Lnk-RB 1..808 17..824 4040 100 Plus
CG17367-PA 2172 Lnk-RA 1..808 17..824 4040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
Lnk-RF 2951 CG17367-RF 279..1086 17..824 4040 100 Plus
Lnk-RA 3113 CG17367-RA 474..1281 17..824 4040 100 Plus
Lnk-RB 2918 CG17367-RB 279..1086 17..824 4040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25889778..25890279 17..518 2510 100 Plus
3R 32079331 3R 25890716..25891024 516..824 1545 100 Plus
Blast to na_te.dros performed 2015-02-11 04:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 131..202 78..146 118 66.7 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9161..9232 78..146 118 66.7 Plus

BO03617.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:45:12 Download gff for BO03617.5prime
Subject Subject Range Query Range Percent Splice Strand
Lnk-PA 1..808 17..824 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:50:03 Download gff for BO03617.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17367-PA 1..808 17..824 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:10:09 Download gff for BO03617.5prime
Subject Subject Range Query Range Percent Splice Strand
Lnk-RB 279..1086 17..824 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:22:35 Download gff for BO03617.5prime
Subject Subject Range Query Range Percent Splice Strand
Lnk-RB 279..1086 17..824 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:22:35 Download gff for BO03617.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25889778..25890278 17..517 100 -> Plus
3R 25890718..25891024 518..824 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:10:09 Download gff for BO03617.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21715500..21716000 17..517 100 -> Plus
arm_3R 21716440..21716746 518..824 100   Plus

BO03617.complete Sequence

2206 bp assembled on 2007-10-05

GenBank Submission: FJ629571

> BO03617.complete
GAAGTTATCAGTCGACATGGGTGGCAATAGCACAGGAGCGAATACGAGCG
CCTTCAGCGCTGGCGGTTACATTGGGCCCACGTCGGCCAGCAGTCATCAC
AGCCTGGGAACTTCATCGGCGGCAGCGGCAGCAGCAGCAGGAAGTGACCT
GATACCCGCACCAATTGGCACGGGCAACGCCATGGGAGTGTCTTCGTATG
CATACGGTGGAACCAGTTGGGAGGAGTTCTGCGAACGACACGCCAGAGTG
GCTGCCTCGGATTTCGCCAAGGCGTGCATCACGTACATTAATGGCAATCT
GCCGCCGGAGGAGGCGAGGAACATCCAGCATCGCAGCTTTGCTCAGAAAT
TTGTGGAATCCTTTTCGGCGCACTACGACACGGAGTTCTTCAAGCGGAGG
AGCACTCTTAAATCAGGTGCGGGCTCGCTGGACTTCGAGGAGGAGCACGA
GGTGCCAAAACTGCTCTCAAAGTCTCTATTAAGACGACTATCATTCAAAG
GACTGCGCAAGGGCAAGGCCTTCTTCCACAAGAACTCGGATGACTTGGAT
GGCAGCGGTGGCAGCGGCAAGCAGAGCAAGACGAAGCTGGCCAAGATCGT
TGTGGAGTGCCGGAAGGAGGGCACAGTGAACAACCTGACGCCGGAAAGTC
TGGATCAACCGACGGGCTCCCAAAAGTGGGAGAAGTGTCGACTTGTACTG
GTCAAGGCCGTGGGTGGCTACATGCTAGAGTTTTACACGCCGCACAAGGC
GACTAAGCCGCGCAGTGGAGTCTTTTGTTTCCTCATCTCGGAGGCTCGCG
AAACAACGGCACTTGAGATGCCGGACAGGCTGAACACATTCGTCCTCAAG
GCAGACAACAACATGGAGTATGTGATTGAGGCGGAGAGCGCGGAGGAGAT
GCGGAGTTGGCTAGCCACAATACGGTACTGCATGCGAACGCCACCCACTC
AGCAGCCAACGATCGAGTCGGATGGTGTTATGGCGTCCGCCATGCAAACA
TCGCCGACACTTCCGAGTCCCAATCCCATTGGTGGGATTCAGAATCCGCA
GTACCAGCAGCAGCGCGGCTCGAATGGCAATCTGGTGGGAGGTGGAGCTC
CGCTCACCTCATCGCTGTCTGCAGACAGTGCTTTGGGCCAGGGAGGAGCC
ACTTCTGCCAGCGAACTAAATGTCATCAACGAATTGGGCACCTCACCGAC
CTCCGGGCCACCTGACATACCTGTAAGACCCCATCGAGGTGAACAGCGCC
TGTCCGCCTCAAGCAACTTCGATGGCATCGAGGGCACGGAAAATGATGCA
GATGTGGCGGATCTGACGGCTGAGATGAGCGTGTTTCCCTGGTTCCACGG
CACACTGACGCGATCAGAAGCTGCCAGAATGGTACTCCATTCGGATGCAG
CCGGACATGGATACTTTTTGGTGCGACAGAGCGAAACGCGCCGCGGCGAG
TTCGTTCTGACCTTTAACTTCCAAGGACGAGCCAAGCATTTGCGGCTCAC
CATTTCGGAGAAGGGTCAGTGTCGGGTGCAGCACCTGTGGTTTCCCTCGA
TCCAGGAAATGCTCGAACACTTCCGCCACAACCCGATACCACTGGAATCG
GGCGGCACTTCGGATGTGACTCTTACCGAATGGGTGCACTCACACAGCAG
ACTGAATGACCCGACGACGGCAGCAAATCATGACTCAGGACAACTCAACG
ATCTTTCGACAAATGGGAATGGCAATGGGAACGGCAATGGCTACGATAAT
GGTCAGGGTTCATCGACGGCATCGAATGCGGCGGGAGGAACTGCATCGGG
AGCTGCTGGCGGTGGCCATCCGTCGCCGAGACATTGCAACGAAGTGATTA
CCATGAATTTGAGTGTTCGCCTAAAGACAAATGAAATCGAACTGCCACAG
GAGCCAACACACGTCTATTTTCCGGAGCAAGTCTATTTCCATTTGGATCC
CACAACGCTAACAGTGCACGGATCACCGCCACCGGCCCAGAATTTCCTGG
ACCAGCCACATCTGCGGGCTTCGAACGCCTCCCTTCAGGCAGCTGCCCAC
CATCAGGCGGGTTCCTCCGGCAACCGGCATCCCAGCGATGGCGGCAGCAA
CAGCGGCGGAGCAGGAGGCGGATCGGGATCCAGTGGAGGAGCCGAGTGCA
CCGGACGGGCCGTCGATAATCAGTACAGCTTCACCAAAGCAAGCTTTCTA
GACCAT

BO03617.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
Lnk-RA 2172 CG17367-PA 1..2169 17..2185 10845 100 Plus
Lnk-RB 2172 CG17367-PB 1..2169 17..2185 10845 100 Plus
Lnk-RC 2172 CG17367-PC 1..2169 17..2185 10845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
Lnk-RA 3113 CG17367-RA 474..2646 17..2189 10850 100 Plus
Lnk-RB 2918 CG17367-RB 279..2451 17..2189 10850 100 Plus
Lnk-RC 3287 CG17367-RC 648..2820 17..2189 10850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25890716..25892034 516..1834 6595 100 Plus
3R 32079331 3R 25889778..25890279 17..518 2510 100 Plus
3R 32079331 3R 25892445..25892803 1831..2189 1765 99.4 Plus
Blast to na_te.dros performed 2014-11-27 20:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 131..202 78..146 118 66.7 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9161..9232 78..146 118 66.7 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 8580..8682 2085..2186 116 58.3 Plus

BO03617.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:23 Download gff for BO03617.complete
Subject Subject Range Query Range Percent Splice Strand
Lnk-RA 1..2172 17..2188 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:18:43 Download gff for BO03617.complete
Subject Subject Range Query Range Percent Splice Strand
Lnk-RA 399..2576 17..2194 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:31 Download gff for BO03617.complete
Subject Subject Range Query Range Percent Splice Strand
Lnk-RC 648..2820 17..2190 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:23 Download gff for BO03617.complete
Subject Subject Range Query Range Percent Splice Strand
Lnk-RA 399..2576 17..2194 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:14 Download gff for BO03617.complete
Subject Subject Range Query Range Percent Splice Strand
Lnk-RC 648..2820 17..2190 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:14 Download gff for BO03617.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25889778..25890278 17..517 100 -> Plus
3R 25890718..25892034 518..1834 100 -> Plus
3R 25892449..25892803 1835..2190 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:31 Download gff for BO03617.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21715500..21716000 17..517 100 -> Plus
arm_3R 21716440..21717756 518..1834 100 -> Plus
arm_3R 21718171..21718525 1835..2190 99   Plus

BO03617.pep Sequence

Translation from 16 to 2206

> BO03617.pep
MGGNSTGANTSAFSAGGYIGPTSASSHHSLGTSSAAAAAAAGSDLIPAPI
GTGNAMGVSSYAYGGTSWEEFCERHARVAASDFAKACITYINGNLPPEEA
RNIQHRSFAQKFVESFSAHYDTEFFKRRSTLKSGAGSLDFEEEHEVPKLL
SKSLLRRLSFKGLRKGKAFFHKNSDDLDGSGGSGKQSKTKLAKIVVECRK
EGTVNNLTPESLDQPTGSQKWEKCRLVLVKAVGGYMLEFYTPHKATKPRS
GVFCFLISEARETTALEMPDRLNTFVLKADNNMEYVIEAESAEEMRSWLA
TIRYCMRTPPTQQPTIESDGVMASAMQTSPTLPSPNPIGGIQNPQYQQQR
GSNGNLVGGGAPLTSSLSADSALGQGGATSASELNVINELGTSPTSGPPD
IPVRPHRGEQRLSASSNFDGIEGTENDADVADLTAEMSVFPWFHGTLTRS
EAARMVLHSDAAGHGYFLVRQSETRRGEFVLTFNFQGRAKHLRLTISEKG
QCRVQHLWFPSIQEMLEHFRHNPIPLESGGTSDVTLTEWVHSHSRLNDPT
TAANHDSGQLNDLSTNGNGNGNGNGYDNGQGSSTASNAAGGTASGAAGGG
HPSPRHCNEVITMNLSVRLKTNEIELPQEPTHVYFPEQVYFHLDPTTLTV
HGSPPPAQNFLDQPHLRASNASLQAAAHHQAGSSGNRHPSDGGSNSGGAG
GGSGSSGGAECTGRAVDNQYSFTKASFLDH

BO03617.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
Lnk-PA 723 CG17367-PA 1..723 1..723 3807 100 Plus
Lnk-PB 723 CG17367-PB 1..723 1..723 3807 100 Plus
Lnk-PC 723 CG17367-PC 1..723 1..723 3807 100 Plus
Lnk-PD 728 CG17367-PD 1..728 1..723 3791 99.3 Plus
Lnk-PF 608 CG17367-PF 1..606 1..606 3178 100 Plus