Clone BO03627 Report

Search the DGRC for BO03627

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:36
Well:27
Vector:pDNR-Dual
Associated Gene/Transcriptbs-RA
Protein status:BO03627.pep:
Sequenced Size:1384

Clone Sequence Records

BO03627.3prime Sequence

671 bp (665 high quality bases) assembled on 2005-12-01

> BO03627.3prime
ATGGTCTAGAAAGCTTGCCTTATCGAACTCCTGTTTGATGGTCAAGGGCT
TATCGGCACTGGCATCGTTCTTGACGGGCGTTCCCGATCCTGAGGCTCCT
GATCCAGAGGCTGTTAGCTTATTGCTCTTTATCAGATTGGCTGCTGTGGA
GCTGAGCGGTATGGTCACATACTGGTTGCCATCCTCTTCGGCGTGCACCT
GCAAGTGGCCTGACTGGATGAGCTGCCTCAGCATCTTCTGCGGTATGTTG
GCAATCGAGGCAGCGGAGTAGACGTACTTGCTGTCCGCCGAGCCTCCTCC
TCCGGCGGCGGTGGACGTTGAGGGTCCGCTGTTGGTGTCAGTCTGATAGT
TCAATGCTGGCATGGTTTTGTGGCCAGAGGAAGCGGTGGCCGCCGAGCAT
GAGGCTGCTGGAGGCGCTGATACCTCTGTTTTGCTGGCCGGCAACTTGGT
TGCCACCTCAGCAGCCTCCGCCGGCATCTCCACGTCCGACGAATCATCCG
ACTCGTTGCCCGACGAGGTAGGCGATCGGTCATCTTTCGAGTCCTCGTCG
GCGATGTTGTAGCTGAGCTCCGTCTCCTCGAACCCGGTGGCCGACATCCG
TTGGTCGCCGCCGCCCACACTGGGCGGATCCGGCGAGTTGAGGCAGGTCT
GGATGAGCTGCTTTCCCGCCT

BO03627.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3411-PA 1350 bs-RA 698..1347 671..22 3250 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
bs-RC 3062 CG3411-RC 1927..2576 671..22 3250 100 Minus
bs-RA 2221 CG3411-RA 1086..1735 671..22 3250 100 Minus
bs-RB 3792 CG3411-RB 1927..2064 671..534 690 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:23:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24375415..24375766 534..183 1760 100 Minus
2R 25286936 2R 24375826..24375987 183..22 810 100 Minus
2R 25286936 2R 24348324..24348461 671..534 690 100 Minus
Blast to na_te.dros performed on 2015-02-12 16:23:52 has no hits.

BO03627.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:45:16 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:50:10 Download gff for BO03627.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3411-PA 698..1350 19..671 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:26:32 Download gff for BO03627.3prime
Subject Subject Range Query Range Percent Splice Strand
bs-RA 1086..1738 19..671 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:48:03 Download gff for BO03627.3prime
Subject Subject Range Query Range Percent Splice Strand
bs-RA 1086..1738 19..671 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:48:03 Download gff for BO03627.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24348324..24348460 535..671 100 -> Minus
2R 24375415..24375766 183..534 100 -> Minus
2R 24375827..24375990 19..182 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:26:32 Download gff for BO03627.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20235847..20235983 535..671 100 -> Minus
arm_2R 20262938..20263289 183..534 100 -> Minus
arm_2R 20263350..20263513 19..182 99   Minus

BO03627.5prime Sequence

777 bp (712 high quality bases) assembled on 2005-12-01

> BO03627.5prime
GAAGTTATCAGTCGACATGGATCCGACGCGAGGTGACTCGCGGTACAATC
TCAACTACTCGATGAGTAGCATAGGGCTGAGCCTGGCGGATCCGGCGGAC
ATGTACGGCAACCCGGCCCTGGGGGCGGGCCGCCCGCCCTCCGGTGGCCT
GCTCCAGAACATGGGCGGCGTTCCGCCGATGCAGCGCCCCAATCCCGCGG
CAGGAGCACCCCCTGCCCCGCAGTGCCAAACGCTCCACAGCCCACAGCAC
GCCTCCCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAACACCAGCA
GCAGCAACAACAGCAGCAGCAGCATCCCCAGCAGCAACGCGGCCTTAAGC
GCTCCGGCAGCGACTGCTACGAGGATCACCACCGCTCGTCCGGCGGACTC
ACCCTCCAAGGACTGGACAACGTGGCCAGCGGAGCCGTCGACGACAGCGT
AGACAACTACAACCCGCTGCCCAACAAGAAGTCTCCGCCTGCCAACGGCA
AAAAGACAAAGGGACGTGTCAAAATCAAAATGGAATACATCGACAATAAG
CTGCGTCGCTACACGACCTTCTCCAAGCGCAAGACGGGCATAATGAAGAA
GGCCTACGAGCTGTCCACGCTGACCGGGACGCAGGTGATGCTGCTGGTGG
CCAGCGAGACGGGCCACGTGTACACATTTGCCACGCGCAAGCTGCAGCCG
ATGATCACCTCGGAGGCGGGAAAGCAGCTCATCCAGACCTGCCTCAACTC
GCCGGATCCGCCCAGTGTGGGCGGCGG

BO03627.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3411-PA 1350 bs-RA 1..761 17..777 3805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:30:48
Subject Length Description Subject Range Query Range Score Percent Strand
bs-RC 3062 CG3411-RC 1230..1990 17..777 3805 100 Plus
bs-RB 3792 CG3411-RB 1230..1990 17..777 3805 100 Plus
bs-RA 2221 CG3411-RA 389..1149 17..777 3805 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24344090..24344675 17..602 2930 100 Plus
2R 25286936 2R 24348210..24348387 600..777 890 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:30:46 has no hits.

BO03627.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:45:17 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:50:11 Download gff for BO03627.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3411-PA 1..761 17..777 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:26:05 Download gff for BO03627.5prime
Subject Subject Range Query Range Percent Splice Strand
bs-RA 384..1149 8..777 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:16:44 Download gff for BO03627.5prime
Subject Subject Range Query Range Percent Splice Strand
bs-RA 384..1149 8..777 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:16:44 Download gff for BO03627.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24348212..24348387 602..777 100   Plus
2R 24344085..24344674 8..601 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:26:05 Download gff for BO03627.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20231608..20232197 8..601 99 -> Plus
arm_2R 20235735..20235910 602..777 100   Plus

BO03627.complete Sequence

1384 bp (1384 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629572

> BO03627.complete
GAAGTTATCAGTCGACATGGATCCGACGCGAGGTGACTCGCGGTACAATC
TCAACTACTCGATGAGTAGCATAGGGCTGAGCCTGGCGGATCCGGCGGAC
ATGTACGGCAACCCGGCCCTGGGGGCGGGCCGCCCGCCCTCCGGTGGCCT
GCTCCAGAACATGGGCGGCGTTCCGCCGATGCAGCGCCCCAATCCCGCGG
CAGGAGCACCCCCTGCCCCGCAGTGCCAAACGCTCCACAGCCCACAGCAC
GCCTCCCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAACACCAGCA
GCAGCAACAACAGCAGCAGCAGCATCCCCAGCAGCAACGCGGCCTTAAGC
GCTCCGGCAGCGACTGCTACGAGGATCACCACCGCTCGTCCGGCGGACTC
ACCCTCCAAGGACTGGACAACGTGGCCAGCGGAGCCGTCGACGACAGCGT
AGACAACTACAACCCGCTGCCCAACAAGAAGTCTCCGCCTGCCAACGGCA
AAAAGACAAAGGGACGTGTCAAAATCAAAATGGAATACATCGACAATAAG
CTGCGTCGCTACACGACCTTCTCCAAGCGCAAGACGGGCATAATGAAGAA
GGCCTACGAGCTGTCCACGCTGACCGGGACGCAGGTGATGCTGCTGGTGG
CCAGCGAGACGGGCCACGTGTACACATTTGCCACGCGCAAGCTGCAGCCG
ATGATCACCTCGGAGGCGGGAAAGCAGCTCATCCAGACCTGCCTCAACTC
GCCGGATCCGCCCAGTGTGGGCGGCGGCGACCAACGGATGTCGGCCACCG
GGTTCGAGGAGACGGAGCTCAGCTACAACATCGCCGACGAGGACTCGAAA
GATGACCGATCGCCTACCTCGTCGGGCAACGAGTCGGATGATTCGTCGGA
CGTGGAGATGCCGGCGGAGGCTGCTGAGGTGGCAACCAAGTTGCCGGCCA
GCAAAACAGAGGTATCAGCGCCTCCAGCAGCCTCATGCTCGGCGGCCACC
GCTTCCTCTGGCCACAAAACCATGCCAGCATTGAACTATCAGACTGACAC
CAACAGCGGACCCTCAACGTCCACCGCCGCCGGAGGAGGAGGCTCGGCGG
ACAGCAAGTACGTCTACTCCGCTGCCTCGATTGCCAACATACCGCAGAAG
ATGCTGAGGCAGCTCATCCAGTCAGGCCACTTGCAGGTGCACGCCGAAGA
GGATGGCAACCAGTATGTGACCATACCGCTCAGCTCCACAGCAGCCAATC
TGATAAAGAGCAATAAGCTAACAGCCTCTGGATCAGGAGCCTCAGGATCG
GGAACGCCCGTCAAGAACGATGCCAGTGCCGATAAGCCCTTGACCATCAA
ACAGGAGTTCGATAAGGCAAGCTTTCTAGACCAT

BO03627.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
bs-RC 1350 CG3411-PC 1..1347 17..1363 6735 100 Plus
bs-RA 1350 CG3411-PA 1..1347 17..1363 6735 100 Plus
bs-RB 1068 CG3411-PB 1..835 17..851 4175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
bs-RC 3062 CG3411-RC 1230..2576 17..1363 6735 100 Plus
bs-RA 2221 CG3411-RA 389..1735 17..1363 6735 100 Plus
bs-RB 3792 CG3411-RB 1230..2064 17..851 4175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24344090..24344675 17..602 2930 100 Plus
2R 25286936 2R 24375415..24375766 851..1202 1760 100 Plus
2R 25286936 2R 24348210..24348461 600..851 1260 100 Plus
2R 25286936 2R 24375826..24375987 1202..1363 810 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:36:33 has no hits.

BO03627.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:44:48 Download gff for BO03627.complete
Subject Subject Range Query Range Percent Splice Strand
bs-RA 1..1350 17..1366 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:00:07 Download gff for BO03627.complete
Subject Subject Range Query Range Percent Splice Strand
bs-RA 378..1728 17..1368 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:55 Download gff for BO03627.complete
Subject Subject Range Query Range Percent Splice Strand
bs-RA 389..1739 17..1368 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:44:48 Download gff for BO03627.complete
Subject Subject Range Query Range Percent Splice Strand
bs-RA 373..1727 8..1366 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:29 Download gff for BO03627.complete
Subject Subject Range Query Range Percent Splice Strand
bs-RA 389..1739 17..1368 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:29 Download gff for BO03627.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24348212..24348460 602..850 100 -> Plus
2R 24344090..24344674 17..601 100 -> Plus
2R 24375415..24375766 851..1202 100 -> Plus
2R 24375827..24375991 1203..1368 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:55 Download gff for BO03627.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20235735..20235983 602..850 100 -> Plus
arm_2R 20231613..20232197 17..601 100 -> Plus
arm_2R 20262938..20263289 851..1202 100 -> Plus
arm_2R 20263350..20263514 1203..1368 98   Plus

BO03627.pep Sequence

Translation from 16 to 1384

> BO03627.pep
MDPTRGDSRYNLNYSMSSIGLSLADPADMYGNPALGAGRPPSGGLLQNMG
GVPPMQRPNPAAGAPPAPQCQTLHSPQHASQQQQQQQQQQQQHQQQQQQQ
QQHPQQQRGLKRSGSDCYEDHHRSSGGLTLQGLDNVASGAVDDSVDNYNP
LPNKKSPPANGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELS
TLTGTQVMLLVASETGHVYTFATRKLQPMITSEAGKQLIQTCLNSPDPPS
VGGGDQRMSATGFEETELSYNIADEDSKDDRSPTSSGNESDDSSDVEMPA
EAAEVATKLPASKTEVSAPPAASCSAATASSGHKTMPALNYQTDTNSGPS
TSTAAGGGGSADSKYVYSAASIANIPQKMLRQLIQSGHLQVHAEEDGNQY
VTIPLSSTAANLIKSNKLTASGSGASGSGTPVKNDASADKPLTIKQEFDK
ASFLDH

BO03627.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
bs-PC 449 CG3411-PC 1..449 1..449 2321 100 Plus
bs-PA 449 CG3411-PA 1..449 1..449 2321 100 Plus
bs-PB 355 CG3411-PB 1..278 1..278 1465 100 Plus
Hr38-PD 836 CG1864-PD 45..430 73..432 162 24.4 Plus
Hr38-PB 1078 CG1864-PB 287..672 73..432 162 24.4 Plus