Clone Sequence Records
BO03627.3prime Sequence
671 bp (665 high quality bases) assembled on 2005-12-01
> BO03627.3prime
ATGGTCTAGAAAGCTTGCCTTATCGAACTCCTGTTTGATGGTCAAGGGCT
TATCGGCACTGGCATCGTTCTTGACGGGCGTTCCCGATCCTGAGGCTCCT
GATCCAGAGGCTGTTAGCTTATTGCTCTTTATCAGATTGGCTGCTGTGGA
GCTGAGCGGTATGGTCACATACTGGTTGCCATCCTCTTCGGCGTGCACCT
GCAAGTGGCCTGACTGGATGAGCTGCCTCAGCATCTTCTGCGGTATGTTG
GCAATCGAGGCAGCGGAGTAGACGTACTTGCTGTCCGCCGAGCCTCCTCC
TCCGGCGGCGGTGGACGTTGAGGGTCCGCTGTTGGTGTCAGTCTGATAGT
TCAATGCTGGCATGGTTTTGTGGCCAGAGGAAGCGGTGGCCGCCGAGCAT
GAGGCTGCTGGAGGCGCTGATACCTCTGTTTTGCTGGCCGGCAACTTGGT
TGCCACCTCAGCAGCCTCCGCCGGCATCTCCACGTCCGACGAATCATCCG
ACTCGTTGCCCGACGAGGTAGGCGATCGGTCATCTTTCGAGTCCTCGTCG
GCGATGTTGTAGCTGAGCTCCGTCTCCTCGAACCCGGTGGCCGACATCCG
TTGGTCGCCGCCGCCCACACTGGGCGGATCCGGCGAGTTGAGGCAGGTCT
GGATGAGCTGCTTTCCCGCCT
BO03627.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3411-PA | 1350 | bs-RA | 698..1347 | 671..22 | 3250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:23:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bs-RC | 3062 | CG3411-RC | 1927..2576 | 671..22 | 3250 | 100 | Minus |
bs-RA | 2221 | CG3411-RA | 1086..1735 | 671..22 | 3250 | 100 | Minus |
bs-RB | 3792 | CG3411-RB | 1927..2064 | 671..534 | 690 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:23:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24375415..24375766 | 534..183 | 1760 | 100 | Minus |
2R | 25286936 | 2R | 24375826..24375987 | 183..22 | 810 | 100 | Minus |
2R | 25286936 | 2R | 24348324..24348461 | 671..534 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:23:52 has no hits.
BO03627.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:45:16 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:50:10 Download gff for
BO03627.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3411-PA | 698..1350 | 19..671 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:26:32 Download gff for
BO03627.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bs-RA | 1086..1738 | 19..671 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:48:03 Download gff for
BO03627.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bs-RA | 1086..1738 | 19..671 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:48:03 Download gff for
BO03627.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24348324..24348460 | 535..671 | 100 | -> | Minus |
2R | 24375415..24375766 | 183..534 | 100 | -> | Minus |
2R | 24375827..24375990 | 19..182 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:26:32 Download gff for
BO03627.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20235847..20235983 | 535..671 | 100 | -> | Minus |
arm_2R | 20262938..20263289 | 183..534 | 100 | -> | Minus |
arm_2R | 20263350..20263513 | 19..182 | 99 | | Minus |
BO03627.5prime Sequence
777 bp (712 high quality bases) assembled on 2005-12-01
> BO03627.5prime
GAAGTTATCAGTCGACATGGATCCGACGCGAGGTGACTCGCGGTACAATC
TCAACTACTCGATGAGTAGCATAGGGCTGAGCCTGGCGGATCCGGCGGAC
ATGTACGGCAACCCGGCCCTGGGGGCGGGCCGCCCGCCCTCCGGTGGCCT
GCTCCAGAACATGGGCGGCGTTCCGCCGATGCAGCGCCCCAATCCCGCGG
CAGGAGCACCCCCTGCCCCGCAGTGCCAAACGCTCCACAGCCCACAGCAC
GCCTCCCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAACACCAGCA
GCAGCAACAACAGCAGCAGCAGCATCCCCAGCAGCAACGCGGCCTTAAGC
GCTCCGGCAGCGACTGCTACGAGGATCACCACCGCTCGTCCGGCGGACTC
ACCCTCCAAGGACTGGACAACGTGGCCAGCGGAGCCGTCGACGACAGCGT
AGACAACTACAACCCGCTGCCCAACAAGAAGTCTCCGCCTGCCAACGGCA
AAAAGACAAAGGGACGTGTCAAAATCAAAATGGAATACATCGACAATAAG
CTGCGTCGCTACACGACCTTCTCCAAGCGCAAGACGGGCATAATGAAGAA
GGCCTACGAGCTGTCCACGCTGACCGGGACGCAGGTGATGCTGCTGGTGG
CCAGCGAGACGGGCCACGTGTACACATTTGCCACGCGCAAGCTGCAGCCG
ATGATCACCTCGGAGGCGGGAAAGCAGCTCATCCAGACCTGCCTCAACTC
GCCGGATCCGCCCAGTGTGGGCGGCGG
BO03627.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3411-PA | 1350 | bs-RA | 1..761 | 17..777 | 3805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:30:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bs-RC | 3062 | CG3411-RC | 1230..1990 | 17..777 | 3805 | 100 | Plus |
bs-RB | 3792 | CG3411-RB | 1230..1990 | 17..777 | 3805 | 100 | Plus |
bs-RA | 2221 | CG3411-RA | 389..1149 | 17..777 | 3805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:30:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24344090..24344675 | 17..602 | 2930 | 100 | Plus |
2R | 25286936 | 2R | 24348210..24348387 | 600..777 | 890 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:30:46 has no hits.
BO03627.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:45:17 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:50:11 Download gff for
BO03627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3411-PA | 1..761 | 17..777 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:26:05 Download gff for
BO03627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bs-RA | 384..1149 | 8..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:16:44 Download gff for
BO03627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bs-RA | 384..1149 | 8..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:16:44 Download gff for
BO03627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24348212..24348387 | 602..777 | 100 | | Plus |
2R | 24344085..24344674 | 8..601 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:26:05 Download gff for
BO03627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20231608..20232197 | 8..601 | 99 | -> | Plus |
arm_2R | 20235735..20235910 | 602..777 | 100 | | Plus |
BO03627.complete Sequence
1384 bp (1384 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629572
> BO03627.complete
GAAGTTATCAGTCGACATGGATCCGACGCGAGGTGACTCGCGGTACAATC
TCAACTACTCGATGAGTAGCATAGGGCTGAGCCTGGCGGATCCGGCGGAC
ATGTACGGCAACCCGGCCCTGGGGGCGGGCCGCCCGCCCTCCGGTGGCCT
GCTCCAGAACATGGGCGGCGTTCCGCCGATGCAGCGCCCCAATCCCGCGG
CAGGAGCACCCCCTGCCCCGCAGTGCCAAACGCTCCACAGCCCACAGCAC
GCCTCCCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAACACCAGCA
GCAGCAACAACAGCAGCAGCAGCATCCCCAGCAGCAACGCGGCCTTAAGC
GCTCCGGCAGCGACTGCTACGAGGATCACCACCGCTCGTCCGGCGGACTC
ACCCTCCAAGGACTGGACAACGTGGCCAGCGGAGCCGTCGACGACAGCGT
AGACAACTACAACCCGCTGCCCAACAAGAAGTCTCCGCCTGCCAACGGCA
AAAAGACAAAGGGACGTGTCAAAATCAAAATGGAATACATCGACAATAAG
CTGCGTCGCTACACGACCTTCTCCAAGCGCAAGACGGGCATAATGAAGAA
GGCCTACGAGCTGTCCACGCTGACCGGGACGCAGGTGATGCTGCTGGTGG
CCAGCGAGACGGGCCACGTGTACACATTTGCCACGCGCAAGCTGCAGCCG
ATGATCACCTCGGAGGCGGGAAAGCAGCTCATCCAGACCTGCCTCAACTC
GCCGGATCCGCCCAGTGTGGGCGGCGGCGACCAACGGATGTCGGCCACCG
GGTTCGAGGAGACGGAGCTCAGCTACAACATCGCCGACGAGGACTCGAAA
GATGACCGATCGCCTACCTCGTCGGGCAACGAGTCGGATGATTCGTCGGA
CGTGGAGATGCCGGCGGAGGCTGCTGAGGTGGCAACCAAGTTGCCGGCCA
GCAAAACAGAGGTATCAGCGCCTCCAGCAGCCTCATGCTCGGCGGCCACC
GCTTCCTCTGGCCACAAAACCATGCCAGCATTGAACTATCAGACTGACAC
CAACAGCGGACCCTCAACGTCCACCGCCGCCGGAGGAGGAGGCTCGGCGG
ACAGCAAGTACGTCTACTCCGCTGCCTCGATTGCCAACATACCGCAGAAG
ATGCTGAGGCAGCTCATCCAGTCAGGCCACTTGCAGGTGCACGCCGAAGA
GGATGGCAACCAGTATGTGACCATACCGCTCAGCTCCACAGCAGCCAATC
TGATAAAGAGCAATAAGCTAACAGCCTCTGGATCAGGAGCCTCAGGATCG
GGAACGCCCGTCAAGAACGATGCCAGTGCCGATAAGCCCTTGACCATCAA
ACAGGAGTTCGATAAGGCAAGCTTTCTAGACCAT
BO03627.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:36:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bs-RC | 1350 | CG3411-PC | 1..1347 | 17..1363 | 6735 | 100 | Plus |
bs-RA | 1350 | CG3411-PA | 1..1347 | 17..1363 | 6735 | 100 | Plus |
bs-RB | 1068 | CG3411-PB | 1..835 | 17..851 | 4175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:36:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bs-RC | 3062 | CG3411-RC | 1230..2576 | 17..1363 | 6735 | 100 | Plus |
bs-RA | 2221 | CG3411-RA | 389..1735 | 17..1363 | 6735 | 100 | Plus |
bs-RB | 3792 | CG3411-RB | 1230..2064 | 17..851 | 4175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:36:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24344090..24344675 | 17..602 | 2930 | 100 | Plus |
2R | 25286936 | 2R | 24375415..24375766 | 851..1202 | 1760 | 100 | Plus |
2R | 25286936 | 2R | 24348210..24348461 | 600..851 | 1260 | 100 | Plus |
2R | 25286936 | 2R | 24375826..24375987 | 1202..1363 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:36:33 has no hits.
BO03627.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:44:48 Download gff for
BO03627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bs-RA | 1..1350 | 17..1366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:00:07 Download gff for
BO03627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bs-RA | 378..1728 | 17..1368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:55 Download gff for
BO03627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bs-RA | 389..1739 | 17..1368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:44:48 Download gff for
BO03627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bs-RA | 373..1727 | 8..1366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:29 Download gff for
BO03627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
bs-RA | 389..1739 | 17..1368 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:29 Download gff for
BO03627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24348212..24348460 | 602..850 | 100 | -> | Plus |
2R | 24344090..24344674 | 17..601 | 100 | -> | Plus |
2R | 24375415..24375766 | 851..1202 | 100 | -> | Plus |
2R | 24375827..24375991 | 1203..1368 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:55 Download gff for
BO03627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20235735..20235983 | 602..850 | 100 | -> | Plus |
arm_2R | 20231613..20232197 | 17..601 | 100 | -> | Plus |
arm_2R | 20262938..20263289 | 851..1202 | 100 | -> | Plus |
arm_2R | 20263350..20263514 | 1203..1368 | 98 | | Plus |
BO03627.pep Sequence
Translation from 16 to 1384
> BO03627.pep
MDPTRGDSRYNLNYSMSSIGLSLADPADMYGNPALGAGRPPSGGLLQNMG
GVPPMQRPNPAAGAPPAPQCQTLHSPQHASQQQQQQQQQQQQHQQQQQQQ
QQHPQQQRGLKRSGSDCYEDHHRSSGGLTLQGLDNVASGAVDDSVDNYNP
LPNKKSPPANGKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELS
TLTGTQVMLLVASETGHVYTFATRKLQPMITSEAGKQLIQTCLNSPDPPS
VGGGDQRMSATGFEETELSYNIADEDSKDDRSPTSSGNESDDSSDVEMPA
EAAEVATKLPASKTEVSAPPAASCSAATASSGHKTMPALNYQTDTNSGPS
TSTAAGGGGSADSKYVYSAASIANIPQKMLRQLIQSGHLQVHAEEDGNQY
VTIPLSSTAANLIKSNKLTASGSGASGSGTPVKNDASADKPLTIKQEFDK
ASFLDH
BO03627.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
bs-PC | 449 | CG3411-PC | 1..449 | 1..449 | 2321 | 100 | Plus |
bs-PA | 449 | CG3411-PA | 1..449 | 1..449 | 2321 | 100 | Plus |
bs-PB | 355 | CG3411-PB | 1..278 | 1..278 | 1465 | 100 | Plus |
Hr38-PD | 836 | CG1864-PD | 45..430 | 73..432 | 162 | 24.4 | Plus |
Hr38-PB | 1078 | CG1864-PB | 287..672 | 73..432 | 162 | 24.4 | Plus |