Clone Sequence Records
BO03630.3prime Sequence
778 bp (759 high quality bases) assembled on 2005-12-01
> BO03630.3prime
ATGGTCTAGAAAGCTTGCTCTCACCTGGAAATCATTGAAAATGGTTTCCG
TGACACGGATCTTCTCCACGCGTATATTGAACATCGCAAATCCATTCATG
ATGTTGAAGGCGATGGCGAAGACCACCAGCGCCAAGTACGTTCCCAAGGC
GATCCACCAGAGCAGCTGCTCGTGGAGCTTCTGCTCAAAGCTCTTGAGCA
CCAGCAGCCCGATAGTTAGGCCAGCAATGGCACCAGCCAAATGGGCCACA
TACGAAACAGCACCCGCCGTTTCCGCCTGATCTATGGCCAGGAATTCACT
CGATGATCCCAGCTGCAGTTCGTCGCCAGCATAGCGAGCATAGATGGCAA
AGCCAAAGTCGAAGGAAACGAAGACCAGAATGTGAAGCAGCTTGATGACT
CCATAACGCATCTGGTGATAGTTGAGAAGCACATTGGCCAGGTGGGCGGC
TAGCAAAGCGTATACTCCACCACTGGCGCCCACAAGGAACACATCCGGGT
CAAAGATGCTAGTGCCCAGGCTTCCCGCCAGCACCCCGGAGAAGTAGATG
CAGGCTATCCTCGTGGAACCATGAACCATCTCCAGTGGCAGCCCAAAAAC
CAGCTGAACTGCCACGTTAAAACCGAGATGCAGCCACCCGGCATGGAGTA
CCATGTAGAAGAGGAAGCGCCAGATCTCGTGACGCTTATCGGGACGGTAG
ATGAACATGGAGTCCGAGGGTATGGGTCCCCTTGGCGCCGCCTCACCCGT
GACCACTGAGTGGTAAACAAAGAACCCA
BO03630.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33166-PB | 1458 | stet-RB | 703..1455 | 774..22 | 3765 | 100 | Minus |
CG33166-PA | 993 | stet-RA | 238..990 | 774..22 | 3765 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:38:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stet-RA | 1898 | CG33166-RA | 408..1160 | 774..22 | 3765 | 100 | Minus |
stet-RB | 2380 | CG33166-RB | 890..1642 | 774..22 | 3765 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:38:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1476582..1476987 | 369..774 | 2030 | 100 | Plus |
3L | 28110227 | 3L | 1476176..1476523 | 22..369 | 1740 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:38:54 has no hits.
BO03630.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:45:22 Download gff for
BO03630.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-PA | 234..993 | 19..777 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:50:17 Download gff for
BO03630.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33166-PA | 234..993 | 19..777 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:50:45 Download gff for
BO03630.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-RB | 886..1647 | 15..777 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:17:05 Download gff for
BO03630.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-RB | 886..1647 | 15..777 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:17:05 Download gff for
BO03630.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1476171..1476522 | 15..368 | 99 | <- | Plus |
3L | 1476582..1476990 | 369..777 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:50:45 Download gff for
BO03630.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1476171..1476522 | 15..368 | 99 | <- | Plus |
arm_3L | 1476582..1476990 | 369..777 | 99 | | Plus |
BO03630.5prime Sequence
823 bp (706 high quality bases) assembled on 2005-12-01
> BO03630.5prime
GAAGTTATCAGTCGACATGCGCTATCAATGCACCAATGATGCCGGCTATG
ATACGGAACACACGTCCCTGAACTCGGACTTCGATGAGGCCGAGCTGCGA
CGGGAGCTACTAAGAGATAAATGGAAACTGCTCTTTGACATGTTCGATCC
CGAGGGTTTTGGCGAAATATCAGTCGAGGAATTCCTGGAGGCCCTCAAGT
CGCCGGAGTTCCTGTCCCAAGTGCCTATGAACAAGCGGGAGCTGCTGCTG
GAGCGGGCAAAGAAGGCGAAGCTGCCCACAGGACCCGGCTACGTGACGTT
CCAGGACTTTGTGAATGTGATGAGCGGCAAGCGGACACGTAGCTTTAAGT
GCGCCGTACACCATCGAGATCGTGAAGTCTGCTCCGAAAACGATTTCCAG
CTGGTGCTAAACGAACCGCCACTCTTTCGCAAAATGGTGCACGCCGTGGC
CATGGAGATCCTGCCCGAGGAGCGGGATCGCAAGTACTACGCCGATCGCT
ACACCTGCTGTCCGCCGCCTTTTTTCATCATCCTGGTTACTCTGGTGGAG
CTGGGTTTCTTTGTTTACCACTCAGTGGTCACGGGTGAGGCGGCGCCAAG
GGGACCCATACCCTCGGACTCCATGTTCATCTACCGTCCCGATAAGCGTC
ACGAGATCTGGCGCTTCCTCTTCTACATGGTACTCCATGCCGGGTGGCTG
CATCTCGGTTTTAACGTGGCAGTTCAGCTGGTTTTTGGGCTGCCACTGGA
GATGGTTCATGGTTCCACGAGGATAGCCTGCATCTACTTCTCCGGGGTGC
TGGCGGGAGCCTGGGCACTAGCA
BO03630.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33166-PB | 1458 | stet-RB | 163..954 | 17..808 | 3960 | 100 | Plus |
CG33166-PA | 993 | stet-RA | 1..489 | 320..808 | 2445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:10:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stet-RB | 2380 | CG33166-RB | 350..1157 | 17..823 | 4015 | 99.9 | Plus |
stet-RA | 1898 | CG33166-RA | 171..675 | 320..823 | 2500 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:10:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1476720..1476995 | 823..549 | 1330 | 99.6 | Minus |
3L | 28110227 | 3L | 1477050..1477288 | 557..319 | 1165 | 99.2 | Minus |
3L | 28110227 | 3L | 1487754..1487936 | 324..142 | 900 | 99.5 | Minus |
3L | 28110227 | 3L | 1488098..1488190 | 118..26 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:10:47 has no hits.
BO03630.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:45:23 Download gff for
BO03630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-PB | 156..969 | 9..822 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:50:19 Download gff for
BO03630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33166-PB | 156..969 | 9..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:14:17 Download gff for
BO03630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-RB | 343..1156 | 9..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:29:23 Download gff for
BO03630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-RB | 343..1156 | 9..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:29:23 Download gff for
BO03630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1476721..1476993 | 551..822 | 99 | <- | Minus |
3L | 1477057..1477287 | 320..550 | 100 | <- | Minus |
3L | 1487759..1487935 | 143..319 | 100 | <- | Minus |
3L | 1488006..1488029 | 119..142 | 100 | <- | Minus |
3L | 1488098..1488195 | 20..118 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:14:17 Download gff for
BO03630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1476721..1476993 | 551..822 | 99 | <- | Minus |
arm_3L | 1477057..1477287 | 320..550 | 100 | <- | Minus |
arm_3L | 1487759..1487935 | 143..319 | 100 | <- | Minus |
arm_3L | 1488006..1488029 | 119..142 | 100 | <- | Minus |
arm_3L | 1488098..1488195 | 20..118 | 97 | | Minus |
BO03630.complete Sequence
1330 bp (1330 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629573
> BO03630.complete
GAAGTTATCAGTCGACATGCGCTATCAATGCACCAATGATGCCGGCTATG
ATACGGAACACACGTCCCTGAACTCGGACTTCGATGAGGCCGAGCTGCGA
CGGGAGCTACTAAGAGATAAATGGAAACTGCTCTTTGACATGTTCGATCC
CGAGGGTTTTGGCGAAATATCAGTCGAGGAATTCCTGGAGGCCCTCAAGT
CGCCGGAGTTCCTGTCCCAAGTGCCTATGAACAAGCGGGAGCTGCTGCTG
GAGCGGGCAAAGAAGGCGAAGCTGCCCACAGGACCCGGCTACGTGACGTT
CCAGGACTTTGTGAATGTGATGAGCGGCAAGCGGACACGTAGCTTTAAGT
GCGCCGTACACCATCGAGATCGTGAAGTCTGCTCCGAAAACGATTTCCAG
CTGGTGCTAAACGAACCGCCACTCTTTCGCAAAATGGTGCACGCCGTGGC
CATGGAGATCCTGCCCGAGGAGCGGGATCGCAAGTACTACGCCGATCGCT
ACACCTGCTGTCCGCCGCCTTTTTTCATCATCCTGGTTACTCTGGTGGAG
CTGGGTTTCTTTGTTTACCACTCAGTGGTCACGGGTGAGGCGGCGCCAAG
GGGACCCATACCCTCGGACTCCATGTTCATCTACCGTCCCGATAAGCGTC
ACGAGATCTGGCGCTTCCTCTTCTACATGGTACTCCATGCCGGGTGGCTG
CATCTCGGTTTTAACGTGGCAGTTCAGCTGGTTTTTGGGCTGCCACTGGA
GATGGTTCATGGTTCCACGAGGATAGCCTGCATCTACTTCTCCGGGGTGC
TGGCGGGAAGCCTGGGCACTAGCATCTTTGACCCGGATGTGTTCCTTGTG
GGCGCCAGTGGTGGAGTATACGCTTTGCTAGCCGCCCACCTGGCCAATGT
GCTTCTCAACTATCACCAGATGCGTTATGGAGTCATCAAGCTGCTTCACA
TTCTGGTCTTCGTTTCCTTCGACTTTGGCTTTGCCATCTATGCTCGCTAT
GCTGGCGACGAACTGCAGCTGGGATCATCGAGTGAATTCCTGGCCATAGA
TCAGGCGGAAACGGCGGGTGCTGTTTCGTATGTGGCCCATTTGGCTGGTG
CCATTGCTGGCCTAACTATCGGGCTGCTGGTGCTCAAGAGCTTTGAGCAG
AAGCTCCACGAGCAGCTGCTCTGGTGGATCGCCTTGGGAACGTACTTGGC
GCTGGTGGTCTTCGCCATCGCCTTCAACATCATGAATGGATTTGCGATGT
TCAATATACGCGTGGAGAAGATCCGTGTCACGGAAACCATTTTCAATGAT
TTCCAGGTGAGAGCAAGCTTTCTAGACCAT
BO03630.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:36:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stet-RB | 1458 | CG33166-PB | 163..1455 | 17..1309 | 6465 | 100 | Plus |
stet-RA | 993 | CG33166-PA | 1..990 | 320..1309 | 4950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:36:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stet-RB | 2380 | CG33166-RB | 350..1642 | 17..1309 | 6465 | 100 | Plus |
stet-RA | 1898 | CG33166-RA | 171..1160 | 320..1309 | 4950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:36:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1476582..1476995 | 962..549 | 2070 | 100 | Minus |
3L | 28110227 | 3L | 1476176..1476523 | 1309..962 | 1740 | 100 | Minus |
3L | 28110227 | 3L | 1477050..1477288 | 557..319 | 1165 | 99.2 | Minus |
3L | 28110227 | 3L | 1487754..1487936 | 324..142 | 900 | 99.5 | Minus |
3L | 28110227 | 3L | 1488098..1488190 | 118..26 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:36:39 has no hits.
BO03630.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:44:52 Download gff for
BO03630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-RB | 156..1458 | 9..1312 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:00:09 Download gff for
BO03630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-RB | 350..1645 | 17..1314 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:57 Download gff for
BO03630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-RB | 350..1645 | 17..1314 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:44:52 Download gff for
BO03630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-RB | 343..1647 | 9..1316 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:31 Download gff for
BO03630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stet-RB | 350..1645 | 17..1314 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:31 Download gff for
BO03630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1476171..1476522 | 963..1314 | 99 | <- | Minus |
3L | 1476582..1476993 | 551..962 | 100 | <- | Minus |
3L | 1477057..1477287 | 320..550 | 100 | <- | Minus |
3L | 1487759..1487935 | 143..319 | 100 | <- | Minus |
3L | 1488006..1488029 | 119..142 | 100 | <- | Minus |
3L | 1488098..1488198 | 17..118 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:57 Download gff for
BO03630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1476171..1476522 | 963..1314 | 99 | <- | Minus |
arm_3L | 1476582..1476993 | 551..962 | 100 | <- | Minus |
arm_3L | 1477057..1477287 | 320..550 | 100 | <- | Minus |
arm_3L | 1487759..1487935 | 143..319 | 100 | <- | Minus |
arm_3L | 1488006..1488029 | 119..142 | 100 | <- | Minus |
arm_3L | 1488098..1488198 | 17..118 | 96 | | Minus |
BO03630.pep Sequence
Translation from 16 to 1330
> BO03630.pep
MRYQCTNDAGYDTEHTSLNSDFDEAELRRELLRDKWKLLFDMFDPEGFGE
ISVEEFLEALKSPEFLSQVPMNKRELLLERAKKAKLPTGPGYVTFQDFVN
VMSGKRTRSFKCAVHHRDREVCSENDFQLVLNEPPLFRKMVHAVAMEILP
EERDRKYYADRYTCCPPPFFIILVTLVELGFFVYHSVVTGEAAPRGPIPS
DSMFIYRPDKRHEIWRFLFYMVLHAGWLHLGFNVAVQLVFGLPLEMVHGS
TRIACIYFSGVLAGSLGTSIFDPDVFLVGASGGVYALLAAHLANVLLNYH
QMRYGVIKLLHILVFVSFDFGFAIYARYAGDELQLGSSSEFLAIDQAETA
GAVSYVAHLAGAIAGLTIGLLVLKSFEQKLHEQLLWWIALGTYLALVVFA
IAFNIMNGFAMFNIRVEKIRVTETIFNDFQVRASFLDH
BO03630.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:31:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stet-PB | 485 | CG33166-PB | 55..485 | 1..431 | 2248 | 100 | Plus |
stet-PA | 330 | CG33166-PA | 1..330 | 102..431 | 1718 | 100 | Plus |
rho-PB | 355 | CG1004-PB | 102..354 | 168..431 | 662 | 48.5 | Plus |
rho-PA | 355 | CG1004-PA | 102..354 | 168..431 | 662 | 48.5 | Plus |
ru-PA | 341 | CG1214-PA | 97..315 | 167..407 | 626 | 51.9 | Plus |