Clone BO03630 Report

Search the DGRC for BO03630

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:36
Well:30
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO03630.pep:
Sequenced Size:1330

Clone Sequence Records

BO03630.3prime Sequence

778 bp (759 high quality bases) assembled on 2005-12-01

> BO03630.3prime
ATGGTCTAGAAAGCTTGCTCTCACCTGGAAATCATTGAAAATGGTTTCCG
TGACACGGATCTTCTCCACGCGTATATTGAACATCGCAAATCCATTCATG
ATGTTGAAGGCGATGGCGAAGACCACCAGCGCCAAGTACGTTCCCAAGGC
GATCCACCAGAGCAGCTGCTCGTGGAGCTTCTGCTCAAAGCTCTTGAGCA
CCAGCAGCCCGATAGTTAGGCCAGCAATGGCACCAGCCAAATGGGCCACA
TACGAAACAGCACCCGCCGTTTCCGCCTGATCTATGGCCAGGAATTCACT
CGATGATCCCAGCTGCAGTTCGTCGCCAGCATAGCGAGCATAGATGGCAA
AGCCAAAGTCGAAGGAAACGAAGACCAGAATGTGAAGCAGCTTGATGACT
CCATAACGCATCTGGTGATAGTTGAGAAGCACATTGGCCAGGTGGGCGGC
TAGCAAAGCGTATACTCCACCACTGGCGCCCACAAGGAACACATCCGGGT
CAAAGATGCTAGTGCCCAGGCTTCCCGCCAGCACCCCGGAGAAGTAGATG
CAGGCTATCCTCGTGGAACCATGAACCATCTCCAGTGGCAGCCCAAAAAC
CAGCTGAACTGCCACGTTAAAACCGAGATGCAGCCACCCGGCATGGAGTA
CCATGTAGAAGAGGAAGCGCCAGATCTCGTGACGCTTATCGGGACGGTAG
ATGAACATGGAGTCCGAGGGTATGGGTCCCCTTGGCGCCGCCTCACCCGT
GACCACTGAGTGGTAAACAAAGAACCCA

BO03630.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG33166-PB 1458 stet-RB 703..1455 774..22 3765 100 Minus
CG33166-PA 993 stet-RA 238..990 774..22 3765 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
stet-RA 1898 CG33166-RA 408..1160 774..22 3765 100 Minus
stet-RB 2380 CG33166-RB 890..1642 774..22 3765 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1476582..1476987 369..774 2030 100 Plus
3L 28110227 3L 1476176..1476523 22..369 1740 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:38:54 has no hits.

BO03630.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:45:22 Download gff for BO03630.3prime
Subject Subject Range Query Range Percent Splice Strand
stet-PA 234..993 19..777 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:50:17 Download gff for BO03630.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33166-PA 234..993 19..777 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:50:45 Download gff for BO03630.3prime
Subject Subject Range Query Range Percent Splice Strand
stet-RB 886..1647 15..777 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:17:05 Download gff for BO03630.3prime
Subject Subject Range Query Range Percent Splice Strand
stet-RB 886..1647 15..777 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:17:05 Download gff for BO03630.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1476171..1476522 15..368 99 <- Plus
3L 1476582..1476990 369..777 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:50:45 Download gff for BO03630.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1476171..1476522 15..368 99 <- Plus
arm_3L 1476582..1476990 369..777 99   Plus

BO03630.5prime Sequence

823 bp (706 high quality bases) assembled on 2005-12-01

> BO03630.5prime
GAAGTTATCAGTCGACATGCGCTATCAATGCACCAATGATGCCGGCTATG
ATACGGAACACACGTCCCTGAACTCGGACTTCGATGAGGCCGAGCTGCGA
CGGGAGCTACTAAGAGATAAATGGAAACTGCTCTTTGACATGTTCGATCC
CGAGGGTTTTGGCGAAATATCAGTCGAGGAATTCCTGGAGGCCCTCAAGT
CGCCGGAGTTCCTGTCCCAAGTGCCTATGAACAAGCGGGAGCTGCTGCTG
GAGCGGGCAAAGAAGGCGAAGCTGCCCACAGGACCCGGCTACGTGACGTT
CCAGGACTTTGTGAATGTGATGAGCGGCAAGCGGACACGTAGCTTTAAGT
GCGCCGTACACCATCGAGATCGTGAAGTCTGCTCCGAAAACGATTTCCAG
CTGGTGCTAAACGAACCGCCACTCTTTCGCAAAATGGTGCACGCCGTGGC
CATGGAGATCCTGCCCGAGGAGCGGGATCGCAAGTACTACGCCGATCGCT
ACACCTGCTGTCCGCCGCCTTTTTTCATCATCCTGGTTACTCTGGTGGAG
CTGGGTTTCTTTGTTTACCACTCAGTGGTCACGGGTGAGGCGGCGCCAAG
GGGACCCATACCCTCGGACTCCATGTTCATCTACCGTCCCGATAAGCGTC
ACGAGATCTGGCGCTTCCTCTTCTACATGGTACTCCATGCCGGGTGGCTG
CATCTCGGTTTTAACGTGGCAGTTCAGCTGGTTTTTGGGCTGCCACTGGA
GATGGTTCATGGTTCCACGAGGATAGCCTGCATCTACTTCTCCGGGGTGC
TGGCGGGAGCCTGGGCACTAGCA

BO03630.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG33166-PB 1458 stet-RB 163..954 17..808 3960 100 Plus
CG33166-PA 993 stet-RA 1..489 320..808 2445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
stet-RB 2380 CG33166-RB 350..1157 17..823 4015 99.9 Plus
stet-RA 1898 CG33166-RA 171..675 320..823 2500 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1476720..1476995 823..549 1330 99.6 Minus
3L 28110227 3L 1477050..1477288 557..319 1165 99.2 Minus
3L 28110227 3L 1487754..1487936 324..142 900 99.5 Minus
3L 28110227 3L 1488098..1488190 118..26 465 100 Minus
Blast to na_te.dros performed on 2015-02-04 19:10:47 has no hits.

BO03630.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:45:23 Download gff for BO03630.5prime
Subject Subject Range Query Range Percent Splice Strand
stet-PB 156..969 9..822 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:50:19 Download gff for BO03630.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33166-PB 156..969 9..822 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:14:17 Download gff for BO03630.5prime
Subject Subject Range Query Range Percent Splice Strand
stet-RB 343..1156 9..822 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:29:23 Download gff for BO03630.5prime
Subject Subject Range Query Range Percent Splice Strand
stet-RB 343..1156 9..822 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:29:23 Download gff for BO03630.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1476721..1476993 551..822 99 <- Minus
3L 1477057..1477287 320..550 100 <- Minus
3L 1487759..1487935 143..319 100 <- Minus
3L 1488006..1488029 119..142 100 <- Minus
3L 1488098..1488195 20..118 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:14:17 Download gff for BO03630.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1476721..1476993 551..822 99 <- Minus
arm_3L 1477057..1477287 320..550 100 <- Minus
arm_3L 1487759..1487935 143..319 100 <- Minus
arm_3L 1488006..1488029 119..142 100 <- Minus
arm_3L 1488098..1488195 20..118 97   Minus

BO03630.complete Sequence

1330 bp (1330 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629573

> BO03630.complete
GAAGTTATCAGTCGACATGCGCTATCAATGCACCAATGATGCCGGCTATG
ATACGGAACACACGTCCCTGAACTCGGACTTCGATGAGGCCGAGCTGCGA
CGGGAGCTACTAAGAGATAAATGGAAACTGCTCTTTGACATGTTCGATCC
CGAGGGTTTTGGCGAAATATCAGTCGAGGAATTCCTGGAGGCCCTCAAGT
CGCCGGAGTTCCTGTCCCAAGTGCCTATGAACAAGCGGGAGCTGCTGCTG
GAGCGGGCAAAGAAGGCGAAGCTGCCCACAGGACCCGGCTACGTGACGTT
CCAGGACTTTGTGAATGTGATGAGCGGCAAGCGGACACGTAGCTTTAAGT
GCGCCGTACACCATCGAGATCGTGAAGTCTGCTCCGAAAACGATTTCCAG
CTGGTGCTAAACGAACCGCCACTCTTTCGCAAAATGGTGCACGCCGTGGC
CATGGAGATCCTGCCCGAGGAGCGGGATCGCAAGTACTACGCCGATCGCT
ACACCTGCTGTCCGCCGCCTTTTTTCATCATCCTGGTTACTCTGGTGGAG
CTGGGTTTCTTTGTTTACCACTCAGTGGTCACGGGTGAGGCGGCGCCAAG
GGGACCCATACCCTCGGACTCCATGTTCATCTACCGTCCCGATAAGCGTC
ACGAGATCTGGCGCTTCCTCTTCTACATGGTACTCCATGCCGGGTGGCTG
CATCTCGGTTTTAACGTGGCAGTTCAGCTGGTTTTTGGGCTGCCACTGGA
GATGGTTCATGGTTCCACGAGGATAGCCTGCATCTACTTCTCCGGGGTGC
TGGCGGGAAGCCTGGGCACTAGCATCTTTGACCCGGATGTGTTCCTTGTG
GGCGCCAGTGGTGGAGTATACGCTTTGCTAGCCGCCCACCTGGCCAATGT
GCTTCTCAACTATCACCAGATGCGTTATGGAGTCATCAAGCTGCTTCACA
TTCTGGTCTTCGTTTCCTTCGACTTTGGCTTTGCCATCTATGCTCGCTAT
GCTGGCGACGAACTGCAGCTGGGATCATCGAGTGAATTCCTGGCCATAGA
TCAGGCGGAAACGGCGGGTGCTGTTTCGTATGTGGCCCATTTGGCTGGTG
CCATTGCTGGCCTAACTATCGGGCTGCTGGTGCTCAAGAGCTTTGAGCAG
AAGCTCCACGAGCAGCTGCTCTGGTGGATCGCCTTGGGAACGTACTTGGC
GCTGGTGGTCTTCGCCATCGCCTTCAACATCATGAATGGATTTGCGATGT
TCAATATACGCGTGGAGAAGATCCGTGTCACGGAAACCATTTTCAATGAT
TTCCAGGTGAGAGCAAGCTTTCTAGACCAT

BO03630.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
stet-RB 1458 CG33166-PB 163..1455 17..1309 6465 100 Plus
stet-RA 993 CG33166-PA 1..990 320..1309 4950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
stet-RB 2380 CG33166-RB 350..1642 17..1309 6465 100 Plus
stet-RA 1898 CG33166-RA 171..1160 320..1309 4950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1476582..1476995 962..549 2070 100 Minus
3L 28110227 3L 1476176..1476523 1309..962 1740 100 Minus
3L 28110227 3L 1477050..1477288 557..319 1165 99.2 Minus
3L 28110227 3L 1487754..1487936 324..142 900 99.5 Minus
3L 28110227 3L 1488098..1488190 118..26 465 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:36:39 has no hits.

BO03630.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:44:52 Download gff for BO03630.complete
Subject Subject Range Query Range Percent Splice Strand
stet-RB 156..1458 9..1312 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:00:09 Download gff for BO03630.complete
Subject Subject Range Query Range Percent Splice Strand
stet-RB 350..1645 17..1314 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:57 Download gff for BO03630.complete
Subject Subject Range Query Range Percent Splice Strand
stet-RB 350..1645 17..1314 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:44:52 Download gff for BO03630.complete
Subject Subject Range Query Range Percent Splice Strand
stet-RB 343..1647 9..1316 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:31 Download gff for BO03630.complete
Subject Subject Range Query Range Percent Splice Strand
stet-RB 350..1645 17..1314 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:31 Download gff for BO03630.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1476171..1476522 963..1314 99 <- Minus
3L 1476582..1476993 551..962 100 <- Minus
3L 1477057..1477287 320..550 100 <- Minus
3L 1487759..1487935 143..319 100 <- Minus
3L 1488006..1488029 119..142 100 <- Minus
3L 1488098..1488198 17..118 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:57 Download gff for BO03630.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1476171..1476522 963..1314 99 <- Minus
arm_3L 1476582..1476993 551..962 100 <- Minus
arm_3L 1477057..1477287 320..550 100 <- Minus
arm_3L 1487759..1487935 143..319 100 <- Minus
arm_3L 1488006..1488029 119..142 100 <- Minus
arm_3L 1488098..1488198 17..118 96   Minus

BO03630.pep Sequence

Translation from 16 to 1330

> BO03630.pep
MRYQCTNDAGYDTEHTSLNSDFDEAELRRELLRDKWKLLFDMFDPEGFGE
ISVEEFLEALKSPEFLSQVPMNKRELLLERAKKAKLPTGPGYVTFQDFVN
VMSGKRTRSFKCAVHHRDREVCSENDFQLVLNEPPLFRKMVHAVAMEILP
EERDRKYYADRYTCCPPPFFIILVTLVELGFFVYHSVVTGEAAPRGPIPS
DSMFIYRPDKRHEIWRFLFYMVLHAGWLHLGFNVAVQLVFGLPLEMVHGS
TRIACIYFSGVLAGSLGTSIFDPDVFLVGASGGVYALLAAHLANVLLNYH
QMRYGVIKLLHILVFVSFDFGFAIYARYAGDELQLGSSSEFLAIDQAETA
GAVSYVAHLAGAIAGLTIGLLVLKSFEQKLHEQLLWWIALGTYLALVVFA
IAFNIMNGFAMFNIRVEKIRVTETIFNDFQVRASFLDH

BO03630.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
stet-PB 485 CG33166-PB 55..485 1..431 2248 100 Plus
stet-PA 330 CG33166-PA 1..330 102..431 1718 100 Plus
rho-PB 355 CG1004-PB 102..354 168..431 662 48.5 Plus
rho-PA 355 CG1004-PA 102..354 168..431 662 48.5 Plus
ru-PA 341 CG1214-PA 97..315 167..407 626 51.9 Plus