Clone Sequence Records
BO03636.3prime Sequence
542 bp (455 high quality bases) assembled on 2005-12-01
> BO03636.3prime
ATGGTCTAGAAAGCTTGCTTTCAATAATGTCGTTTGCAACCCGAGCTGAA
TGAGTAATAAAAGACTTAACGTAAAGTCTGTAAAAAATTGTGAACTTCCC
GAACGAAGTTCTTCATTATCAGTGAACAAATAATTCAAACAAGCTGCCGG
TGGCTTCACGTACGCTGTAAACTCGGGATAGCGAATTATTTCCGAAGGAA
TTGATAATGAATCCTTGGATACGCGACAAAACGTCATATGTGTTCCGGTT
ATAAATGCTTGTTCAACACGTTTCGTAAAGAGAGGATCATGCCAAGGCAA
CTGATTTAAATGCGATAGAAATGTGCGATCGTGAAATTCGGCTGGGTCGG
ATATAACAAGCTTGTTTAACAAAGACTCCTGGTAGATGACGTCTTCTTTG
GACGTTTTTCCGGAATTTGGTTTGCTTGTCGCATTCTTCGCCTGTTTACT
GTAGTCGGGGTAGTCACTGTTGTAGAGAAACATGTTCTCGACTTCGGTCA
TATTTAAGGAATAGAATTGGTACACACGGAACATCCTCGAAA
BO03636.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5235-PA | 2097 | CG5235-RA | 1581..2094 | 535..22 | 2495 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:05:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5235-RB | 2521 | CG5235-RB | 1715..2234 | 542..22 | 2535 | 99.2 | Minus |
| CG5235-RA | 2711 | CG5235-RA | 1715..2234 | 542..22 | 2535 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:05:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16088104..16088617 | 22..535 | 2525 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:05:46 has no hits.
BO03636.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:45:31 Download gff for
BO03636.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-PA | 1578..2097 | 19..539 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:50:30 Download gff for
BO03636.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-PA | 1578..2097 | 19..539 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:23:55 Download gff for
BO03636.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-RA | 1718..2239 | 15..539 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:52:01 Download gff for
BO03636.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-RA | 1718..2239 | 15..539 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:52:01 Download gff for
BO03636.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16088096..16088620 | 15..539 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:23:55 Download gff for
BO03636.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16081196..16081720 | 15..539 | 98 | | Plus |
BO03636.5prime Sequence
723 bp (677 high quality bases) assembled on 2005-12-01
> BO03636.5prime
GAAGTTATCAGTCGACATGTCCGTTCAAGACGTACTATGGATCGTACTCA
CGGTGCAGTTGAGTTTTGGTCTTGCGTATTTTGAAAACAATCAAAGGACG
CAGGACTATGATGTCGATAAAAATGGTTCTGTACACCACAAAAACTGGGT
GCGTAACGAAATGATGGACAGCTTGGGCTTGTACTGGCTCAAATGGTGGA
TAAACGCCAACGAAAATAGCATTTACTTTGAAGTAACTGTTCACACACGA
GGCTTTGCCGGCCTGGGTTTCTCCAAGGATGGCCGGCTGGCCAGAGCGGA
TATGGTTTTGATGTGGGTGGATGACGCCACAGGACATCCGAACGTCTTGG
ACTGCCATGGGGCGCTGCATCCTTCAAGCGGACCGCCGCTGCAGGACGAT
ACTCAAAACTACGATGTCCTAGATGGCAAACAAAATGGGACGCACACAAT
CCTGAAGTTTAAACGCAAAATTGAGACCTGTGACCCATTCGATATTCCAC
TCTCCGCTGATACGTTTAAGGTACTGTGGTCCATTGGGGAAAATGATCCT
ATTCATGGAAACTTGGATTGGCAAGGTCAGAGCAGAGGCGTGAAAGCTTT
GCAATTGTTTTCGCCAATGTTTACGAAAAATAGTCACTCGATCGAAGGCA
TCCAAAAATGGGACATAACTGTGAACAACGTAACAATTGATCGGTCAATG
GATACACTATACTGGTGTAAAAT
BO03636.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5235-PA | 2097 | CG5235-RA | 1..707 | 17..723 | 3535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:38:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5235-RB | 2521 | CG5235-RB | 140..847 | 16..723 | 3540 | 100 | Plus |
| CG5235-RA | 2711 | CG5235-RA | 140..847 | 16..723 | 3540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:38:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16089763..16090253 | 506..16 | 2455 | 100 | Minus |
| 3L | 28110227 | 3L | 16089491..16089708 | 723..506 | 1090 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:38:05 has no hits.
BO03636.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:45:32 Download gff for
BO03636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-PA | 1..707 | 17..723 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:50:32 Download gff for
BO03636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-PA | 1..707 | 17..723 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:31:44 Download gff for
BO03636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-RA | 137..847 | 13..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:13:20 Download gff for
BO03636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-RA | 137..847 | 13..723 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:13:20 Download gff for
BO03636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16089491..16089708 | 506..723 | 100 | <- | Minus |
| 3L | 16089764..16090255 | 16..505 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:31:44 Download gff for
BO03636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16082591..16082808 | 506..723 | 100 | <- | Minus |
| arm_3L | 16082864..16083355 | 16..505 | 99 | -> | Minus |
BO03636.complete Sequence
2131 bp assembled on 2006-10-10
GenBank Submission: FJ629574
> BO03636.complete
GAAGTTATCAGTCGACATGTCCGTTCAAGACGTACTATGGATCGTACTCA
CGGTGCAGTTGAGTTTTGGTCTTGCGTATTTTGAAAACAATCAAAGGACG
CAGGACTATGATGTCGATAAAAATGGTTCTGTACACCACAAAAACTGGGT
GCGTAACGAAATGATGGACAGCTTGGGCTTGTACTGGCTCAAATGGTGGA
TAAACGCCAACGAAAATAGCATTTACTTTGAAGTAACTGTTCACACACGA
GGCTTTGCCGGCCTGGGTTTCTCCAAGGATGGCCGGCTGGCCAGAGCGGA
TATGGTTTTGATGTGGGTGGATGACGCCACAGGACATCCGAACGTCTTGG
ACTGCCATGGGGCGCTGCATCCTTCAAGCGGACCGCCGCTGCAGGACGAT
ACTCAAAACTACGATGTCCTAGATGGCAAACAAAATGGGACGCACACAAT
CCTGAAGTTTAAACGCAAAATTGAGACCTGTGACCCATTCGATATTCCAC
TCTCCGCTGATACGTTTAAGGTACTGTGGTCCATTGGGGAAAATGATCCT
ATTCATGGAAACTTGGATTGGCAAGGTCAGAGCAGAGGCGTGAAAGCTTT
GCAATTGTTTTCGCCAATGTTTACGAAAAATAGTCACTCGATCGAAGGCA
TCCAAAAATGGGACATAACTGTGAACAACGTAACAATTGATCGGTCAATG
GATACACTATACTGGTGTAAAATAGTGCGACTACCAGAGTTAACTGGCAA
ACAGCATATAATTGGTTATGAGCCGCTGCTGTCTGGTAAATACGAGAGGA
ATGTTGTTCACCACATGACCCTGTTTGAGTGTCAGTCCAAGATATACTCT
GGATCCGATCCTTCGTCCTGGGACCTTTGGGTTAGGAGTGCCGGCACAGT
GTGCAACAGCAACCTACTGACGCCACGCGACTGGGATTCGTGCTCTACGC
CAGTTGCAGTTTGGTCCTTGGGATCTGATGGACAGTTTCTACCTCCCCAC
GCAGGGATCCCAATGGGCGGAGCATCTGGAGTTAGCTATTATATGCTGGA
AATACACTACGATAATCCCGATGGAAAGGAATCGGTGGATCACTCCGGTT
TTCGAATACACTACACACCCAATCTGCGAACCTACGATTCCGGAATTCTA
ATAAGTGGTGTTTCCATTTCGGAAACGCAACTCATTCCGCCTGGTCAAAA
GAAGTATCGATCCGTCGGCATTTGTGGGCCGTCTTGTTCAAGCGTCATGT
TCCCAAAGGATGGTATTAAAATAATATCCGGAACGTTGCACTCACATCAA
GCTGGTCGCACAATTAGTCTTCGACATGTTCGATCTGGTAAGGAGTTGAA
TCCGATCATTGTTGACGAAAACTACGATTACAGGCACCAAAAAGTCCATC
AGCTTGCCAATGAAACGGTCGTATTGCCAGGGGATTACCTAATTACAGAC
TGTTCCTATGAGACAAAGTACAGAAAACGACCCACATTCGGGGGCTATTC
CACGAAGGAGGAAATGTGTCTCACCTTTATTACTTATTACCCAAAGATTG
AGATGTCCGGATGTTATAGTATGACACCAGTGCGTGAGTTTTTCGAGATG
TTCCGTGTGTACCAATTCTATTCCTTAAATATGACCGATGTCGAGAACAT
GTTTCTCTACAACAGTGACTACACCGACTACAGTAAACAGGCGAAGAATG
CGACAAACAAACCAAATTCCGGAAAAACGTCCAAAGAAGACGTCATCTAC
CAGGAGTCTTTGTTAAACAAGCTTGTTATATCCGACCCAGCCGAATTTCA
CGATCGCACATTTCTATCGCATTTAAATCAGTTGCCTTGGCATGATCCTC
TCTTTACGAAACGTGTTGAACAAGCATTTATAACCGGAACACATATGACG
TTTTGTCGCGTATCCAAGGATTCATTATCAATTCCTTCGGAAATAATTCG
CTATCCCGAGTTTACAGCGTACGTGAAGCCACCGGCAGCTTGTTTGAATT
ATTTGTTCACTGATAATGAAGAACTTCGTTCGGGAAGTTCACAATTTTTT
ACAGACTTTACGTTAAGTCTTTTATTACTCATTCAGCTCGGGTTGCAAAC
GACATTATTGAAAGCAAGCTTTCTAGACCAT
BO03636.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:01:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5235-RB | 2097 | CG5235-PB | 1..2094 | 17..2110 | 10470 | 100 | Plus |
| CG5235-RA | 2097 | CG5235-PA | 1..2094 | 17..2110 | 10470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:01:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5235-RB | 2521 | CG5235-RB | 140..2234 | 16..2110 | 10475 | 100 | Plus |
| CG5235-RA | 2711 | CG5235-RA | 140..2234 | 16..2110 | 10475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:01:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16088104..16089708 | 2110..506 | 8025 | 100 | Minus |
| 3L | 28110227 | 3L | 16089763..16090253 | 506..16 | 2455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:01:52 has no hits.
BO03636.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:47:07 Download gff for
BO03636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-RA | 1..2097 | 17..2113 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:26 Download gff for
BO03636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-RA | 132..2234 | 13..2117 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:20 Download gff for
BO03636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-RA | 141..2237 | 17..2115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:47:08 Download gff for
BO03636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-RA | 132..2234 | 13..2117 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:56 Download gff for
BO03636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5235-RA | 141..2237 | 17..2115 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:56 Download gff for
BO03636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16088098..16089708 | 506..2115 | 99 | <- | Minus |
| 3L | 16089764..16090252 | 17..505 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:20 Download gff for
BO03636.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16081198..16082808 | 506..2115 | 99 | <- | Minus |
| arm_3L | 16082864..16083352 | 17..505 | 100 | | Minus |
BO03636.pep Sequence
Translation from 16 to 2131
> BO03636.pep
MSVQDVLWIVLTVQLSFGLAYFENNQRTQDYDVDKNGSVHHKNWVRNEMM
DSLGLYWLKWWINANENSIYFEVTVHTRGFAGLGFSKDGRLARADMVLMW
VDDATGHPNVLDCHGALHPSSGPPLQDDTQNYDVLDGKQNGTHTILKFKR
KIETCDPFDIPLSADTFKVLWSIGENDPIHGNLDWQGQSRGVKALQLFSP
MFTKNSHSIEGIQKWDITVNNVTIDRSMDTLYWCKIVRLPELTGKQHIIG
YEPLLSGKYERNVVHHMTLFECQSKIYSGSDPSSWDLWVRSAGTVCNSNL
LTPRDWDSCSTPVAVWSLGSDGQFLPPHAGIPMGGASGVSYYMLEIHYDN
PDGKESVDHSGFRIHYTPNLRTYDSGILISGVSISETQLIPPGQKKYRSV
GICGPSCSSVMFPKDGIKIISGTLHSHQAGRTISLRHVRSGKELNPIIVD
ENYDYRHQKVHQLANETVVLPGDYLITDCSYETKYRKRPTFGGYSTKEEM
CLTFITYYPKIEMSGCYSMTPVREFFEMFRVYQFYSLNMTDVENMFLYNS
DYTDYSKQAKNATNKPNSGKTSKEDVIYQESLLNKLVISDPAEFHDRTFL
SHLNQLPWHDPLFTKRVEQAFITGTHMTFCRVSKDSLSIPSEIIRYPEFT
AYVKPPAACLNYLFTDNEELRSGSSQFFTDFTLSLLLLIQLGLQTTLLKA
SFLDH
BO03636.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:58:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5235-PB | 698 | CG5235-PB | 1..698 | 1..698 | 3770 | 100 | Plus |
| CG5235-PA | 698 | CG5235-PA | 1..698 | 1..698 | 3770 | 100 | Plus |
| olf413-PC | 760 | CG12673-PC | 123..584 | 61..519 | 674 | 33.2 | Plus |
| olf413-PB | 760 | CG12673-PB | 123..584 | 61..519 | 674 | 33.2 | Plus |
| Tbh-PC | 670 | CG1543-PC | 136..567 | 83..532 | 538 | 32.2 | Plus |
