Clone Sequence Records
BO03637.3prime Sequence
569 bp (568 high quality bases) assembled on 2005-12-01
> BO03637.3prime
ATGGTCTAGAAAGCTTGCTTTCCAAGGGCGCCACATGGTTTCTTCGACTG
GCTTGGGGCTGGCGGCGGATTGAGAGTCCTCGTTATCGCTGTGGTATCCC
GAGGAGGCGGGGCTGAGTGGGCGTGGGGTGGAGGTTGTAACAGAAGTCTG
GACCTGATCGGCCTGCAGCATGCGCTGGAACTCGACGCCCAGATGGGTCA
TCACTGTCTTGCCCACATCCACACTCATGGCTGGAGTGCAGGCCATCACA
CGGGAGATCTCGCTGACGGCGTTCATGTAGCCATTCTTGAAGCTATCCAT
GGGAAGTGGGGAGACCGGCGCCTGCTGCTTGACGACCTGTTTGCGCATGA
AGACGAGTGCCGCCTCCAGCATCTCGGCCTTGTCCATTCGCAGGATGGCA
TCATCGCCCTGGAACTCGGCCACCAAGGTCTTCAAGGTGTCCAAACACTT
GTTCATGCGGGCCCGACGCTGGCGCTCCAAAAGGGGCTTCTTCACCTTCA
AATAGTGCTGGGTCTTGGAGACGAATGTGGTGCTGTTGTTGCTCTGTGGT
GCCATGTCGACTGATAACT
BO03637.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6096-PA | 537 | HLHm5-RA | 1..534 | 555..22 | 2670 | 100 | Minus |
| CG8365-PA | 540 | E(spl)-RA | 127..164 | 405..368 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:06:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E(spl)m5-HLH-RA | 882 | CG6096-RA | 84..617 | 555..22 | 2670 | 100 | Minus |
| E(spl)m8-HLH-RA | 769 | CG8365-RA | 98..434 | 518..188 | 455 | 76.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:05:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26029119..26029652 | 22..555 | 2670 | 100 | Plus |
| 3R | 32079331 | 3R | 26040337..26040673 | 518..188 | 385 | 75.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:06:00 has no hits.
BO03637.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:45:33 Download gff for
BO03637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLHm5-PA | 1..537 | 19..555 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:50:33 Download gff for
BO03637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6096-PA | 1..537 | 19..555 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:23:57 Download gff for
BO03637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)m5-HLH-RA | 75..624 | 16..563 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:52:35 Download gff for
BO03637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)m5-HLH-RA | 75..624 | 16..563 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:52:35 Download gff for
BO03637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26029112..26029661 | 16..563 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:23:57 Download gff for
BO03637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21854834..21855383 | 16..563 | 98 | | Plus |
BO03637.5prime Sequence
569 bp (568 high quality bases) assembled on 2005-11-29
> BO03637.5prime
GAAGTTATCAGTCGACATGGCACCACAGAGCAACAACAGCACCACATTCG
TCTCCAAGACCCAGCACTATTTGAAGGTGAAGAAGCCCCTTTTGGAGCGC
CAGCGTCGGGCCCGCATGAACAAGTGTTTGGACACCTTGAAGACCTTGGT
GGCCGAGTTCCAGGGCGATGATGCCATCCTGCGAATGGACAAGGCCGAGA
TGCTGGAGGCGGCACTCGTCTTCATGCGCAAACAGGTCGTCAAGCAGCAG
GCGCCGGTCTCCCCACTTCCCATGGATAGCTTCAAGAATGGCTACATGAA
CGCCGTCAGCGAGATCTCCCGTGTGATGGCCTGCACTCCAGCCATGAGTG
TGGATGTGGGCAAGACAGTGATGACCCATCTGGGCGTCGAGTTCCAGCGC
ATGCTGCAGGCCGATCAGGTCCAGACTTCTGTTACAACCTCCACCCCACG
CCCACTCAGCCCCGCCTCCTCGGGATACCACAGCGATAACGAGGACTCTC
AATCCGCCGCCAGCCCCAAGCCAGTCGAAGAAACCATGTGGCGCCCTTGG
AAAGCAAGCTTTCTAGACC
BO03637.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6096-PA | 537 | HLHm5-RA | 1..534 | 17..550 | 2670 | 100 | Plus |
| CG8365-PA | 540 | E(spl)-RA | 127..164 | 167..204 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:24:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E(spl)m5-HLH-RA | 882 | CG6096-RA | 84..617 | 17..550 | 2670 | 100 | Plus |
| E(spl)m8-HLH-RA | 769 | CG8365-RA | 98..434 | 54..384 | 455 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:24:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26029119..26029652 | 550..17 | 2670 | 100 | Minus |
| 3R | 32079331 | 3R | 26040337..26040673 | 54..384 | 385 | 75.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:24:09 has no hits.
BO03637.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:45:34 Download gff for
BO03637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLHm5-PA | 1..537 | 17..553 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:50:34 Download gff for
BO03637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6096-PA | 1..537 | 17..553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:26:36 Download gff for
BO03637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)m5-HLH-RA | 75..624 | 9..556 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:48:38 Download gff for
BO03637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)m5-HLH-RA | 75..624 | 9..556 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:48:38 Download gff for
BO03637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26029112..26029661 | 9..556 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:26:36 Download gff for
BO03637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21854834..21855383 | 9..556 | 98 | | Minus |
BO03637.complete Sequence
571 bp (571 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629575
> BO03637.complete
GAAGTTATCAGTCGACATGGCACCACAGAGCAACAACAGCACCACATTCG
TCTCCAAGACCCAGCACTATTTGAAGGTGAAGAAGCCCCTTTTGGAGCGC
CAGCGTCGGGCCCGCATGAACAAGTGTTTGGACACCTTGAAGACCTTGGT
GGCCGAGTTCCAGGGCGATGATGCCATCCTGCGAATGGACAAGGCCGAGA
TGCTGGAGGCGGCACTCGTCTTCATGCGCAAACAGGTCGTCAAGCAGCAG
GCGCCGGTCTCCCCACTTCCCATGGATAGCTTCAAGAATGGCTACATGAA
CGCCGTCAGCGAGATCTCCCGTGTGATGGCCTGCACTCCAGCCATGAGTG
TGGATGTGGGCAAGACAGTGATGACCCATCTGGGCGTCGAGTTCCAGCGC
ATGCTGCAGGCCGATCAGGTCCAGACTTCTGTTACAACCTCCACCCCACG
CCCACTCAGCCCCGCCTCCTCGGGATACCACAGCGATAACGAGGACTCTC
AATCCGCCGCCAGCCCCAAGCCAGTCGAAGAAACCATGTGGCGCCCTTGG
AAAGCAAGCTTTCTAGACCAT
BO03637.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:56:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E(spl)m5-HLH-RA | 537 | CG6096-PA | 1..534 | 17..550 | 2670 | 100 | Plus |
| E(spl)m8-HLH-RA | 540 | CG8365-PA | 14..350 | 54..384 | 385 | 75.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E(spl)m5-HLH-RA | 882 | CG6096-RA | 84..617 | 17..550 | 2670 | 100 | Plus |
| E(spl)m8-HLH-RA | 769 | CG8365-RA | 98..434 | 54..384 | 385 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26029119..26029652 | 550..17 | 2670 | 100 | Minus |
| 3R | 32079331 | 3R | 26040337..26040673 | 54..384 | 385 | 75.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:56:44 has no hits.
BO03637.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:02:24 Download gff for
BO03637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLHm5-RA | 1..537 | 17..553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:06:58 Download gff for
BO03637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLHm5-RA | 75..624 | 9..556 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:48 Download gff for
BO03637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)m5-HLH-RA | 84..623 | 17..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:02:24 Download gff for
BO03637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLHm5-RA | 75..624 | 9..556 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:30 Download gff for
BO03637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)m5-HLH-RA | 84..623 | 17..555 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:30 Download gff for
BO03637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26029113..26029652 | 17..555 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:48 Download gff for
BO03637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21854835..21855374 | 17..555 | 99 | | Minus |
BO03637.pep Sequence
Translation from 16 to 571
> BO03637.pep
MAPQSNNSTTFVSKTQHYLKVKKPLLERQRRARMNKCLDTLKTLVAEFQG
DDAILRMDKAEMLEAALVFMRKQVVKQQAPVSPLPMDSFKNGYMNAVSEI
SRVMACTPAMSVDVGKTVMTHLGVEFQRMLQADQVQTSVTTSTPRPLSPA
SSGYHSDNEDSQSAASPKPVEETMWRPWKASFLDH
BO03637.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E(spl)m5-HLH-PA | 178 | CG6096-PA | 1..178 | 1..178 | 911 | 100 | Plus |
| E(spl)m8-HLH-PA | 179 | CG8365-PA | 3..179 | 11..178 | 521 | 60.9 | Plus |
| E(spl)m7-HLH-PA | 186 | CG8361-PA | 7..186 | 12..178 | 304 | 39.8 | Plus |
| E(spl)mgamma-HLH-PA | 205 | CG8333-PA | 9..205 | 12..178 | 266 | 34.5 | Plus |
| E(spl)mbeta-HLH-PA | 195 | CG14548-PA | 7..195 | 12..178 | 256 | 34.2 | Plus |
