Clone Sequence Records
BO03638.3prime Sequence
659 bp (580 high quality bases) assembled on 2005-12-01
> BO03638.3prime
ATGGTCTAGAAAGCTTGCTTTACTCTCCGCCTGCTGATTGGCCGTAAACT
GCGTAATGCCGTCTTTCTCCATCGACTCCAGTATATCAGCCACATACACG
GCAACATCAGTGTGGCTCGTCTCGCCACGACGTATGAAGGGCATCTCCAG
CAGACGGCTATACTTGGGTCGATCGCTCTCCTTTTTAATTAGGCAAGTAT
TGACAAAGTCCACAAACTCTTTGGAAAACTCCATGCCGTTATAGGATGTC
AAAAGTCGCGGCGGTTCGCCTTGCACAACCTGGCACAACTGCTCGAAAAC
AGAGTCCCATTTACGATAGGGGAAATTACCAGTCGCCACCTCCATTAATG
TGATGCCCAATGACCAAACATCGCTTCGTACATCGTAGCCCTTGGCACGT
TCTGGATCAATGCGCTCCGGCGCCATGTAGGGCCTGCAGCCCGCATCCTT
GGTCTTGGCAATAGAGTCGACCAGCTGACCCGAAATACCAAAATCGCACA
GCTTTATGTCTCCGCGACGGTGCAACAGAATGTTGCTCGGTTTCACATCC
CGATGGATAATCTTTAGCTCCTCCTTCAAATAGTTCAGCGCATTGACCGT
GGCCACTGTTATCTTAGCCAAGTATAGACTCTGGAATGTGGCGCTGCTGC
TTTTCGTAG
BO03638.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9738-PA | 1275 | Mkk4-RA | 674..1272 | 620..22 | 2995 | 100 | Minus |
| CG9738-PA | 1275 | Mkk4-RA | 636..674 | 659..621 | 195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:57:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mkk4-RC | 4110 | CG9738-RC | 921..1557 | 659..22 | 3165 | 99.8 | Minus |
| Mkk4-RB | 2525 | CG9738-RB | 921..1557 | 659..22 | 3165 | 99.8 | Minus |
| Mkk4-RA | 2698 | CG9738-RA | 921..1557 | 659..22 | 3165 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:56:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8649478..8649715 | 421..659 | 1145 | 99.6 | Plus |
| 3R | 32079331 | 3R | 8648725..8648897 | 22..194 | 865 | 100 | Plus |
| 3R | 32079331 | 3R | 8649277..8649420 | 278..421 | 720 | 100 | Plus |
| 3R | 32079331 | 3R | 1031175..1031303 | 408..280 | 480 | 91.5 | Minus |
| 3R | 32079331 | 3R | 8648962..8649049 | 194..281 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:56:58 has no hits.
BO03638.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:45:35 Download gff for
BO03638.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkk4-PA | 636..1275 | 19..659 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:50:36 Download gff for
BO03638.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9738-PA | 636..1275 | 19..659 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:35:40 Download gff for
BO03638.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkk4-RA | 921..1567 | 12..659 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:34:45 Download gff for
BO03638.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkk4-RA | 921..1567 | 12..659 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:34:45 Download gff for
BO03638.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8649478..8649715 | 421..659 | 99 | | Plus |
| 3R | 8648715..8648896 | 12..193 | 97 | <- | Plus |
| 3R | 8648962..8649047 | 194..279 | 100 | <- | Plus |
| 3R | 8649279..8649419 | 280..420 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:35:40 Download gff for
BO03638.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4474437..4474618 | 12..193 | 97 | <- | Plus |
| arm_3R | 4474684..4474769 | 194..279 | 100 | <- | Plus |
| arm_3R | 4475001..4475141 | 280..420 | 100 | <- | Plus |
| arm_3R | 4475200..4475437 | 421..659 | 99 | | Plus |
BO03638.5prime Sequence
846 bp (761 high quality bases) assembled on 2005-12-01
> BO03638.5prime
GAAGTTATCAGTCGACATGGCCGAACGACCGAAAAATTTGTTTGCAACCG
GATCCAGTCGCTCCCGCAATCCCCCGGATCAGCTAAGCCTGAATAATCTT
AGCATACGCCATCCGCCCTCGTCCACGTCGTCCACTTCTTCGGGATCCAC
CTCCTCGGGCTCAAGTTCCTCATCACAGCACAACCATGTGACCCGCTGTT
TTGGTGCCCAGCAGCCACAGCAAACCCCGCCGGTGGCCAGCAGTCAAGTG
CCACCGGTGCCGGCAGCATCGAGCAGCAGCGCTGCCGATCGTCACCGGGA
GCGAATTCGCCAGCAGGCCTGTGGCAAGCTACAGTTTGGTGAGGGCGGCG
CTAATACACACACATTTACTTCAGACGATCTCGAGGATGAGGGCGAAATT
GGACGCGGTGCATTTGGGGCAGTCAACAAGATGACCTTTAAGAAATTGGA
CAAGGTGATGGCCGTCAAGCGCATTCGATCCACCGTAGACGAGAAGGAAC
AGAAGCAGCTGCTCATGGATCTCGAGGTGGTCATGAAGTCCAACGAGTGC
ATTTACATTGTTCAGTTCTATGGGGCGCTTTTCAAGGAGGGTGACTGCTG
GATTTGTATGGAGCTGATGGACACCTCTTTGGACAAGTTTTACAAGTACA
TCTACGAAAAGCAGCAGCGCCACATTCCAGAGTCTATACTGGCTAAGATA
ACAGTGGCCACGGTCAATGCGCTGAACTATTTGAAGGAGGAGCTAAAGAT
TATCCATCGGGATGTGAAACCGAGCAACATTCTGTTGCACCGTCGCGGAA
ACATAAAGCTGTGCGATTTTGGTATTTCGGGGCAGCTGGGCGACTC
BO03638.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9738-PA | 1275 | Mkk4-RA | 1..830 | 17..846 | 4075 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:32:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mkk4-RC | 4110 | CG9738-RC | 286..1115 | 17..846 | 4105 | 99.6 | Plus |
| Mkk4-RB | 2525 | CG9738-RB | 286..1115 | 17..846 | 4105 | 99.6 | Plus |
| Mkk4-RA | 2698 | CG9738-RA | 286..1115 | 17..846 | 4105 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:32:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8649521..8650319 | 846..48 | 3950 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:32:05 has no hits.
BO03638.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:45:37 Download gff for
BO03638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkk4-PA | 1..830 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:50:37 Download gff for
BO03638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9738-PA | 1..830 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:26:13 Download gff for
BO03638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkk4-RA | 278..1115 | 9..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:21:14 Download gff for
BO03638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkk4-RA | 278..1115 | 9..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:21:14 Download gff for
BO03638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8649521..8650319 | 48..846 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:26:13 Download gff for
BO03638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4475243..4476041 | 48..846 | 99 | <- | Minus |
BO03638.complete Sequence
1309 bp (1309 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629576
> BO03638.complete
GAAGTTATCAGTCGACATGGCCGAACGACCGAAAAATTTGTTTGCAACCG
GATCCAGTCGCTCCCGCAATCCCCCGGATCAGCTAAGCCTGAATAATCTT
AGCATACGCCATCCGCCCTCGTCCACGTCGTCCACTTCTTCGGGATCCAC
CTCCTCGGGCTCAAGTTCCTCATCACAGCACAACCATGTGACCCGCTGTT
TTGGTGCCCAGCAGCCACAGCAAACCCCGCCGGTGGCCAGCAGTCAAGTG
CCACCGGTGCCGGCAGCATCGAGCAGCAGCGCTGCCGATCGTCACCGGGA
GCGAATTCGCCAGCAGGCCTGTGGCAAGCTACAGTTTGGTGAGGGCGGCG
CTAATACACACACATTTACTTCAGACGATCTCGAGGATGAGGGCGAAATT
GGACGCGGTGCATTTGGGGCAGTCAACAAGATGACCTTTAAGAAATTGGA
CAAGGTGATGGCCGTCAAGCGCATTCGATCCACCGTAGACGAGAAGGAAC
AGAAGCAGCTGCTCATGGATCTCGAGGTGGTCATGAAGTCCAACGAGTGC
ATTTACATTGTTCAGTTCTATGGGGCGCTTTTCAAGGAGGGTGACTGCTG
GATTTGTATGGAGCTGATGGACACCTCTTTGGACAAGTTTTACAAGTACA
TCTACGAAAAGCAGCAGCGCCACATTCCAGAGTCTATACTGGCTAAGATA
ACAGTGGCCACGGTCAATGCGCTGAACTATTTGAAGGAGGAGCTAAAGAT
TATCCATCGGGATGTGAAACCGAGCAACATTCTGTTGCACCGTCGCGGAG
ACATAAAGCTGTGCGATTTTGGTATTTCGGGTCAGCTGGTCGACTCTATT
GCCAAGACCAAGGATGCGGGCTGCAGGCCCTACATGGCGCCGGAGCGCAT
TGATCCAGAACGTGCCAAGGGCTACGATGTACGAAGCGATGTTTGGTCAT
TGGGCATCACATTAATGGAGGTGGCGACTGGTAATTTCCCCTATCGTAAA
TGGGACTCTGTTTTCGAGCAGTTGTGCCAGGTTGTGCAAGGCGAACCGCC
GCGACTTTTGACATCCTATAACGGCATGGAGTTTTCCAAAGAGTTTGTGG
ACTTTGTCAATACTTGCCTAATTAAAAAGGAGAGCGATCGACCCAAGTAT
AGCCGTCTGCTGGAGATGCCCTTCATACGTCGTGGCGAGACGAGCCACAC
TGATGTTGCCGTGTATGTGGCTGATATACTGGAGTCGATGGAGAAAGACG
GCATTACGCAGTTTACGGCCAATCAGCAGGCGGAGAGTAAAGCAAGCTTT
CTAGACCAT
BO03638.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:08:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mkk4-RC | 1275 | CG9738-PC | 1..1272 | 17..1288 | 6360 | 100 | Plus |
| Mkk4-RB | 1275 | CG9738-PB | 1..1272 | 17..1288 | 6360 | 100 | Plus |
| Mkk4-RA | 1275 | CG9738-PA | 1..1272 | 17..1288 | 6360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:08:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mkk4-RC | 4110 | CG9738-RC | 286..1557 | 17..1288 | 6360 | 100 | Plus |
| Mkk4-RB | 2525 | CG9738-RB | 286..1557 | 17..1288 | 6360 | 100 | Plus |
| Mkk4-RA | 2698 | CG9738-RA | 286..1557 | 17..1288 | 6360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:08:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8649478..8650319 | 889..48 | 4210 | 100 | Minus |
| 3R | 32079331 | 3R | 8648725..8648897 | 1288..1116 | 865 | 100 | Minus |
| 3R | 32079331 | 3R | 8649277..8649420 | 1032..889 | 720 | 100 | Minus |
| 3R | 32079331 | 3R | 1031175..1031303 | 902..1030 | 480 | 91.5 | Plus |
| 3R | 32079331 | 3R | 8648962..8649049 | 1116..1029 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:08:28 has no hits.
BO03638.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:44:54 Download gff for
BO03638.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkk4-RA | 1..1275 | 17..1291 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:15:28 Download gff for
BO03638.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkk4-RB | 276..1565 | 9..1298 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:45 Download gff for
BO03638.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkk4-RA | 286..1562 | 17..1293 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:44:54 Download gff for
BO03638.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkk4-RA | 276..1565 | 9..1298 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:40 Download gff for
BO03638.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkk4-RA | 286..1562 | 17..1293 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:40 Download gff for
BO03638.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8648720..8648896 | 1117..1293 | 98 | <- | Minus |
| 3R | 8648962..8649047 | 1031..1116 | 100 | <- | Minus |
| 3R | 8649279..8649419 | 890..1030 | 100 | <- | Minus |
| 3R | 8649478..8650319 | 48..889 | 100 | <- | Minus |
| 3R | 8650481..8650511 | 17..47 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:45 Download gff for
BO03638.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4476203..4476233 | 17..47 | 100 | | Minus |
| arm_3R | 4474442..4474618 | 1117..1293 | 98 | <- | Minus |
| arm_3R | 4474684..4474769 | 1031..1116 | 100 | <- | Minus |
| arm_3R | 4475001..4475141 | 890..1030 | 100 | <- | Minus |
| arm_3R | 4475200..4476041 | 48..889 | 100 | <- | Minus |
BO03638.pep Sequence
Translation from 16 to 1309
> BO03638.pep
MAERPKNLFATGSSRSRNPPDQLSLNNLSIRHPPSSTSSTSSGSTSSGSS
SSSQHNHVTRCFGAQQPQQTPPVASSQVPPVPAASSSSAADRHRERIRQQ
ACGKLQFGEGGANTHTFTSDDLEDEGEIGRGAFGAVNKMTFKKLDKVMAV
KRIRSTVDEKEQKQLLMDLEVVMKSNECIYIVQFYGALFKEGDCWICMEL
MDTSLDKFYKYIYEKQQRHIPESILAKITVATVNALNYLKEELKIIHRDV
KPSNILLHRRGDIKLCDFGISGQLVDSIAKTKDAGCRPYMAPERIDPERA
KGYDVRSDVWSLGITLMEVATGNFPYRKWDSVFEQLCQVVQGEPPRLLTS
YNGMEFSKEFVDFVNTCLIKKESDRPKYSRLLEMPFIRRGETSHTDVAVY
VADILESMEKDGITQFTANQQAESKASFLDH
BO03638.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:17:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mkk4-PC | 424 | CG9738-PC | 1..424 | 1..424 | 2201 | 100 | Plus |
| Mkk4-PB | 424 | CG9738-PB | 1..424 | 1..424 | 2201 | 100 | Plus |
| Mkk4-PA | 424 | CG9738-PA | 1..424 | 1..424 | 2201 | 100 | Plus |
| lic-PA | 334 | CG12244-PA | 35..326 | 111..406 | 812 | 54.2 | Plus |
| hep-PE | 492 | CG4353-PE | 87..476 | 33..407 | 744 | 43.4 | Plus |
