Clone Sequence Records
BO03647.3prime Sequence
741 bp (635 high quality bases) assembled on 2005-12-01
> BO03647.3prime
ATGGTCTAGAAAGCTTGCCTTGAAGTAGCGGAACTCGCCCTTCTTGCCCA
GATGCTTGCTGCGCATCATGTCGGTGGGATCCGGCGATCGCTGTTCCATG
CCGGGATTATCCCCTGATCGCGATTTGTTGCCCGGACCTGTGGGACCCGT
CGGTGGCTGCTGCTGTTGCCCGTAGAACTGGGCTCCATCTCCATCCCCGA
AATTGAAGGGGGTTACAATCGTGTGCGGCACGTGGGCCACCTGACCCCGC
ATGTTGCGCGCCTTCCACCACTTTCGGGTATCATCAAGGATCTCCAAGTA
TTCGCCTCGCATCACGCTAAGCTCCTTGTCGTTGTTGGCGGTTCGCGGAT
AGGTGACCAGCACAATCTTAGCGCCCGTCGCCTGCAGATCCTCCAGCCAG
GACTCGAGCATCTGGTCGTCGCTGACATTCGGCAGGCCTCTGCCTCCACC
GCCCAACTCCGACGAAGGCCCCGGACCAGCTCCTGCTCCGTACCCGTTTC
CACTGCGAGATTCCCTCGTATGCAGATTCTGCAGACCAGCTGTGATGGCG
CTAAGGGTTGGTCCAGCTCCTGGTCCGTGGCCATGACCATGGCCATGTCC
CGCTGCTCCGCCGCCCCTGCCTTCGATCGAGTCGAACGACAGCTCGCTGC
GGGCGTTAAAGTCAGACGCACTGATTGCGCCCGCCCGCTCTCCTGTCGCG
CTCCCTTTCCCGCTCCCTTAAACCGTCGTTGCCGGGGTGGA
BO03647.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4276-PA | 2418 | aru-RA | 1745..2415 | 692..22 | 3355 | 100 | Minus |
| CG4276-PD | 2337 | aru-RD | 1664..2334 | 692..22 | 3355 | 100 | Minus |
| CG4276-PC | 2337 | aru-RC | 1664..2334 | 692..22 | 3355 | 100 | Minus |
| CG4276-PA | 2418 | aru-RA | 1697..1745 | 741..693 | 220 | 97.9 | Minus |
| CG4276-PD | 2337 | aru-RD | 1616..1664 | 741..693 | 220 | 97.9 | Minus |
| CG4276-PC | 2337 | aru-RC | 1616..1664 | 741..693 | 220 | 97.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:24:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aru-RC | 2903 | CG4276-RC | 1865..2587 | 741..18 | 3565 | 99.6 | Minus |
| aru-RD | 3026 | CG4276-RD | 1988..2710 | 741..18 | 3565 | 99.6 | Minus |
| aru-RA | 2922 | CG4276-RA | 1884..2606 | 741..18 | 3565 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:24:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 862563..863011 | 292..741 | 2185 | 99.6 | Plus |
| 2L | 23513712 | 2L | 862318..862500 | 111..293 | 915 | 100 | Plus |
| 2L | 23513712 | 2L | 862165..862259 | 18..112 | 460 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:24:18 has no hits.
BO03647.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:45:49 Download gff for
BO03647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aru-PD | 1617..2337 | 19..740 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:50:53 Download gff for
BO03647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4276-PC | 1617..2337 | 19..740 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:26:39 Download gff for
BO03647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aru-RA | 1885..2606 | 18..740 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:48:51 Download gff for
BO03647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aru-RA | 1885..2606 | 18..740 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:48:51 Download gff for
BO03647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 862165..862258 | 18..111 | 98 | <- | Plus |
| 2L | 862319..862498 | 112..291 | 100 | <- | Plus |
| 2L | 862563..863010 | 292..740 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:26:39 Download gff for
BO03647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 862165..862258 | 18..111 | 98 | <- | Plus |
| arm_2L | 862319..862498 | 112..291 | 100 | <- | Plus |
| arm_2L | 862563..863010 | 292..740 | 99 | | Plus |
BO03647.5prime Sequence
763 bp (707 high quality bases) assembled on 2005-12-01
> BO03647.5prime
GAAGTTATCAGTCGACATGGTGAACCACCACTCGAACGGAGGCGGCAGTG
CTGGAAACAGTAGCGGAAGCCTAAGAGGAGGCGGTGCCCATGGAGGCGGC
GGCGGAGGAGGAGACTATTCCGGAGACGATCGCAGCGGAGGCGGCGAGGA
GCGGGAGCGTCTGGAGAGTGACTTGCACGACAAGCCCACCTACCTGCTGG
AACACCTGGCCACCTTCACGGTCAACAAGGAGTCCGGCATTGTGTATCCG
GCGGACGGAATGCGTCGCCTCCTTCAGCTGGAGAAGACCACGGGTATTTG
GTCGCAGAAGATGCAGCTCTGCCTGGACTATCAGTGGGTGCTAATTATGG
ACTATGAAACAGGGAACATAATCGAAAGATTCCCCGCCTCCTTGGTTCAG
GAGCCCACCGCATTCACCTCGAATGACGCCATGGAGCTATACAACAACAT
TCTGGTCTTTATCGTATCCGGAGGCGGTGGTTCTCGCTCCGAGATGCACA
TATTCCAGTCACAAAGTGTGTCCGCCGTTCACCTGGTTGAGGATCTGAAG
CAGCTGAGAAGCGGCAAGATGATAACGCAGCAGCGCGGTGCCACACCCAC
TCAATCAGGAGGCGGAGGAGCCTCCAGCATGGCCATGATGATGAGCAAAA
CCTCCTCGTCCTCGTCGCATAGTAGAGTGGAGCTGCACCAGCACAGGGAG
CAGCGGGCAGAGCGCGAGAGGGAGCGTGATCGAGACCGTGAGCGCGAAAG
CCACCATCACATG
BO03647.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4276-PA | 2418 | aru-RA | 81..828 | 16..763 | 3740 | 100 | Plus |
| CG4276-PD | 2337 | aru-RD | 1..747 | 17..763 | 3735 | 100 | Plus |
| CG4276-PC | 2337 | aru-RC | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:32:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aru-RC | 2903 | CG4276-RC | 249..996 | 16..763 | 3740 | 100 | Plus |
| aru-RD | 3026 | CG4276-RD | 372..1119 | 16..763 | 3740 | 100 | Plus |
| aru-RA | 2922 | CG4276-RA | 268..1015 | 16..763 | 3740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:32:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 864398..864746 | 364..16 | 1745 | 100 | Minus |
| 2L | 23513712 | 2L | 863880..864137 | 763..506 | 1290 | 100 | Minus |
| 2L | 23513712 | 2L | 864195..864339 | 508..364 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:32:41 has no hits.
BO03647.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:45:50 Download gff for
BO03647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aru-PA | 75..828 | 10..763 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:50:55 Download gff for
BO03647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4276-PA | 75..828 | 10..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:26:18 Download gff for
BO03647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aru-RA | 262..1015 | 10..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:07:29 Download gff for
BO03647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aru-RA | 262..1015 | 10..763 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:07:29 Download gff for
BO03647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 864398..864752 | 10..364 | 99 | | Minus |
| 2L | 863880..864134 | 509..763 | 100 | <- | Minus |
| 2L | 864195..864338 | 365..508 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:26:18 Download gff for
BO03647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 863880..864134 | 509..763 | 100 | <- | Minus |
| arm_2L | 864195..864338 | 365..508 | 100 | <- | Minus |
| arm_2L | 864398..864752 | 10..364 | 99 | | Minus |
BO03647.complete Sequence
2371 bp assembled on 2006-10-10
GenBank Submission: FJ629577
> BO03647.complete
GAAGTTATCAGTCGACATGGTGAACCACCACTCGAACGGAGGCGGCAGTG
CTGGAAACAGTAGCGGAAGCCTAAGAGGAGGCGGTGCCCATGGAGGCGGC
GGCGGAGGAGGAGACTATTCCGGAGACGATCGCAGCGGAGGCGGCGAGGA
GCGGGAGCGTCTGGAGAGTGACTTGCACGACAAGCCCACCTACCTGCTGG
AACACCTGGCCACCTTCACGGTCAACAAGGAGTCCGGCATTGTGTATCCG
GCGGACGGAATGCGTCGCCTCCTTCAGCTGGAGAAGACCACGGGTATTTG
GTCGCAGAAGATGCAGCTCTGCCTGGACTATCAGTGGGTGCTAATTATGG
ACTATGAAACAGGGAACATAATCGAAAGATTCCCCGCCTCCTTGGTTCAG
GAGCCCACCGCATTCACCTCGAATGACGCCATGGAGCTATACAACAACAT
TCTGGTCTTTATCGTATCCGGAGGCGGTGGTTCTCGCTCCGAGATGCACA
TATTCCAGTCACAAAGTGTGTCCGCCGTTCACCTGGTTGAGGATCTGAAG
CAGCTGAGAAGCGGCAAGATGATAACGCAGCAGCGCGGTGCCACACCCAC
TCAATCAGGAGGCGGAGGAGCCTCCAGCATGGCCATGATGATGAGCAAAA
CCTCCTCGTCCTCGTCGCATAGTAGAGTGGAGCTGCACCAGCACAGGGAG
CAGCGGGCAGAGCGCGAGAGGGAGCGTGATCGAGACCGTGAGCGCGAAAG
CCACCATCACATGCACCAAAGGAGCAGCATGGAACAGTATGGAATCCGTG
CCGGAGTAGGAGTTTCTGGCGATGACGTTGCCCACATTAGTGGCGAGACG
GATTCGGAACACGGTGGGATTGGGGGCGGTGGCGCAACGGAGCGCGATGA
GACTAGCTCCACGTCCAGCGAGAAGTACGAGCGGGATGTGGCTGTGCTGA
ATCACTGTTTCGATGACATCGAGAAGTTCATAGCTCGTCTTCAGCACGCC
GCCGCCGCTTCCCGGGAGCTCGAGCGCCGTCGTCGCAATCGGAAGTCGAA
GAAAAGGGATCCGGGGGAGGGATTGCTCACTTTGAGGACACGGCCTCCCC
ACGAGAAGGAGTTCGTGGACATCTTTGCCAAGTTTAAGCTGTCATTTAAC
CTGCTGGCAAAGTTGAAGGCGCACATCCACGATCCCAACGCTCCCGAACT
GGTGCATTTCCTCTTCACGCCGCTGGCTCTGATTGTGGAGGCCTCCAGCG
ACACGTACTACGAGTCACAGCTACCGGCCCGTGTGGTTAATCCCCTGCTG
ACCAGAGAGGCCATCAACCTGCTCATCAACTGTGTAACCAGCAAGGAAAC
GGAGCTGTGGCGCTCGTTGGGCGATGCCTGGGTGATCCCGCGAGATCAGT
GGAAGGATGACGTTGGATCCTACCATCCGGTCTTCCTCGATGGCTGGTCA
CCGGACTATTTGATCAACGATGAACTGGAGCCACCACCAAATTCCCCGCC
CGCTCATGTGAGCAAGCGCAGACTCGAGGTCCAGGCTGGATCCGGACTAA
ATGGTCGTGGGGGAGGCGGATACGATGACTACGACTCGGGGAACGGGATG
AACATGGCCATGGGTATCGAGAAGTACACCATCCACCACGGCAACGACGG
TTTAAGGGAGCGGGAAAGGGAGCGCGACAGAGAGCGGGCGGGCGCAATCA
GTGCGTCTGACTTTAACGCCCGCAGCGAGCTGTCGTTCGACTCGATCGAA
GGCAGGGGCGGCGGAGCAGCGGGACATGGCCATGGTCATGGCCACGGACC
AGGAGCTGGACCAACCCTTAGCGCCATCACAGCTGGTCTGCAGAATCTGC
ATACGAGGGAATCTCGCAGTGGAAACGGGTACGGAGCAGGAGCTGGTCCG
GGGCCTTCGTCGGAGTTGGGCGGTGGAGGCAGAGGCCTGCCGAATGTCAG
CGACGACCAGATGCTCGAGTCCTGGCTGGAGGATCTGCAGGCGACGGGCG
CTAAGATTGTGCTGGTCACCTATCCGCGAACCGCCAACAACGACAAGGAG
CTTAGCGTGATGCGAGGCGAATACTTGGAGATCCTTGATGATACCCGAAA
GTGGTGGAAGGCGCGCAACATGCGGGGTCAGGTGGCCCACGTGCCGCACA
CGATTGTAACCCCCTTCAATTTCGGGGATGGAGATGGAGCCCAGTTCTAC
GGGCAACAGCAGCAGCCACCGACGGGTCCCACAGGTCCGGGCAACAAATC
GCGATCAGGGGATAATCCCGGCATGGAACAGCGATCGCCGGATCCCACCG
ACATGATGCGCAGCAAGCATCTGGGCAAGAAGGGCGAGTTCCGCTACTTC
AAGGCAAGCTTTCTAGACCAT
BO03647.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aru-RA | 2418 | CG4276-PA | 81..2415 | 16..2350 | 11675 | 100 | Plus |
| aru-RC | 2337 | CG4276-PC | 1..2334 | 17..2350 | 11670 | 100 | Plus |
| aru-RD | 2337 | CG4276-PD | 1..2334 | 17..2350 | 11670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aru-RC | 2903 | CG4276-RC | 249..2587 | 16..2354 | 11680 | 100 | Plus |
| aru-RD | 3026 | CG4276-RD | 372..2710 | 16..2354 | 11680 | 100 | Plus |
| aru-RA | 2922 | CG4276-RA | 268..2606 | 16..2354 | 11680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:43:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 862563..864137 | 2080..506 | 7875 | 100 | Minus |
| 2L | 23513712 | 2L | 864398..864746 | 364..16 | 1745 | 100 | Minus |
| 2L | 23513712 | 2L | 862318..862500 | 2261..2079 | 915 | 100 | Minus |
| 2L | 23513712 | 2L | 864195..864339 | 508..364 | 725 | 100 | Minus |
| 2L | 23513712 | 2L | 862165..862259 | 2354..2260 | 460 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:43:34 has no hits.
BO03647.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:35:59 Download gff for
BO03647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aru-RA | 75..2418 | 10..2353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:01 Download gff for
BO03647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aru-RC | 243..2587 | 10..2354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:16 Download gff for
BO03647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aru-RA | 269..2606 | 17..2355 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:35:59 Download gff for
BO03647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aru-RC | 243..2587 | 10..2354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:32 Download gff for
BO03647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aru-RA | 269..2606 | 17..2355 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:32 Download gff for
BO03647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 862164..862258 | 2261..2355 | 97 | <- | Minus |
| 2L | 862319..862498 | 2081..2260 | 100 | <- | Minus |
| 2L | 862563..864134 | 509..2080 | 100 | <- | Minus |
| 2L | 864195..864338 | 365..508 | 100 | <- | Minus |
| 2L | 864398..864745 | 17..364 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:16 Download gff for
BO03647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 862164..862258 | 2261..2355 | 97 | <- | Minus |
| arm_2L | 862319..862498 | 2081..2260 | 100 | <- | Minus |
| arm_2L | 862563..864134 | 509..2080 | 100 | <- | Minus |
| arm_2L | 864195..864338 | 365..508 | 100 | <- | Minus |
| arm_2L | 864398..864745 | 17..364 | 100 | | Minus |
BO03647.pep Sequence
Translation from 16 to 2371
> BO03647.pep
MVNHHSNGGGSAGNSSGSLRGGGAHGGGGGGGDYSGDDRSGGGEERERLE
SDLHDKPTYLLEHLATFTVNKESGIVYPADGMRRLLQLEKTTGIWSQKMQ
LCLDYQWVLIMDYETGNIIERFPASLVQEPTAFTSNDAMELYNNILVFIV
SGGGGSRSEMHIFQSQSVSAVHLVEDLKQLRSGKMITQQRGATPTQSGGG
GASSMAMMMSKTSSSSSHSRVELHQHREQRAERERERDRDRERESHHHMH
QRSSMEQYGIRAGVGVSGDDVAHISGETDSEHGGIGGGGATERDETSSTS
SEKYERDVAVLNHCFDDIEKFIARLQHAAAASRELERRRRNRKSKKRDPG
EGLLTLRTRPPHEKEFVDIFAKFKLSFNLLAKLKAHIHDPNAPELVHFLF
TPLALIVEASSDTYYESQLPARVVNPLLTREAINLLINCVTSKETELWRS
LGDAWVIPRDQWKDDVGSYHPVFLDGWSPDYLINDELEPPPNSPPAHVSK
RRLEVQAGSGLNGRGGGGYDDYDSGNGMNMAMGIEKYTIHHGNDGLRERE
RERDRERAGAISASDFNARSELSFDSIEGRGGGAAGHGHGHGHGPGAGPT
LSAITAGLQNLHTRESRSGNGYGAGAGPGPSSELGGGGRGLPNVSDDQML
ESWLEDLQATGAKIVLVTYPRTANNDKELSVMRGEYLEILDDTRKWWKAR
NMRGQVAHVPHTIVTPFNFGDGDGAQFYGQQQQPPTGPTGPGNKSRSGDN
PGMEQRSPDPTDMMRSKHLGKKGEFRYFKASFLDH
BO03647.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:18:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aru-PC | 778 | CG4276-PC | 1..778 | 1..778 | 4126 | 100 | Plus |
| aru-PD | 778 | CG4276-PD | 1..778 | 1..778 | 4126 | 100 | Plus |
| aru-PA | 805 | CG4276-PA | 28..805 | 1..778 | 4126 | 100 | Plus |
| CG8907-PA | 712 | CG8907-PA | 24..377 | 56..487 | 705 | 39.1 | Plus |
| CG8907-PB | 732 | CG8907-PB | 44..397 | 56..487 | 705 | 39.1 | Plus |
| CG8907-PA | 712 | CG8907-PA | 407..477 | 652..722 | 233 | 54.9 | Plus |
