Clone BO03651 Report

Search the DGRC for BO03651

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:36
Well:51
Vector:pDNR-Dual
Associated Gene/Transcriptdally-RA
Protein status:BO03651.pep: validated full length
Sequenced Size:1915

Clone Sequence Records

BO03651.3prime Sequence

659 bp (651 high quality bases) assembled on 2005-12-01

> BO03651.3prime
ATGGTCTAGAAAGCTTGCTTTACTACAGCTACTAAAGAGCATTGTGACTA
GAGTGAGGAGCATCCACGTCGCGGTGCCTTCCAGTGGGTTGGACCCACTG
GTCTTGCCGCTGTCACGCGACTCCACTTCGTTGGTGGTGGTGCCTTCGGA
TTCCTCGATGGGCGTATGGGGTCCATCGCCGGAACCATCTCCGGAACCAT
GTGCGCCTCCATACTCCTCCTCATCGTCGCCGATCTGACCTTCTCCGCCG
CCGGAGCCCTCACCCATATCATTCTGGATGTCGTGCGTCGCCTGTATGCT
GTTGGAAGGTGCCGCAGCTCCAATGCTCTTGCGAATCTTGAAGAGCTTGT
CGACCAGCTCGTTCAGCTTGCCGGTCTGAGCCTTCGCATTGAAGGGCACC
TCGGGATTATATCGCTGGCTATCAGTGCCCGGATTAATCAGCAGCTGAGT
GTAGTCCCCGAAACGATCGCCTGACCAGCAGGAGTGATCGTCACGAGAGT
GCTGTTGCTCATCGCAGAAGTTGTCCACGATGGTCGTGTAGAACTCCTTG
CTCTTGTCGATGGTGGACAGGAAGAGGACCATGCCCGGATCCGGGTCAGT
GGCCCACTTTACGTTGTTCTTGTGGGGCGGAGGCCGCGCATCCGGTTCTC
CGGAAGAAT

BO03651.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4974-PA 1881 dally-RA 1246..1878 654..22 3165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:27:30
Subject Length Description Subject Range Query Range Score Percent Strand
dally-RB 4483 CG4974-RB 1969..2610 659..18 3180 99.7 Minus
dally-RA 3444 CG4974-RA 1969..2610 659..18 3180 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:27:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8888652..8888860 520..312 1045 100 Minus
3L 28110227 3L 8889163..8889319 174..18 770 99.4 Minus
3L 28110227 3L 8888923..8889063 313..173 705 100 Minus
3L 28110227 3L 8887996..8888134 659..521 680 99.3 Minus
Blast to na_te.dros performed on 2015-02-09 18:27:28 has no hits.

BO03651.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:45:53 Download gff for BO03651.3prime
Subject Subject Range Query Range Percent Splice Strand
dally-PA 1241..1881 19..659 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:50:59 Download gff for BO03651.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4974-PA 1241..1881 19..659 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:56:48 Download gff for BO03651.3prime
Subject Subject Range Query Range Percent Splice Strand
dally-RA 1969..2616 12..659 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:11:15 Download gff for BO03651.3prime
Subject Subject Range Query Range Percent Splice Strand
dally-RA 1969..2616 12..659 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:11:15 Download gff for BO03651.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8887996..8888134 521..659 99 -> Minus
3L 8888652..8888859 313..520 100 -> Minus
3L 8888924..8889062 174..312 100 -> Minus
3L 8889164..8889325 12..173 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:56:48 Download gff for BO03651.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8881096..8881234 521..659 99 -> Minus
arm_3L 8881752..8881959 313..520 100 -> Minus
arm_3L 8882024..8882162 174..312 100 -> Minus
arm_3L 8882264..8882425 12..173 98   Minus

BO03651.5prime Sequence

762 bp (718 high quality bases) assembled on 2005-12-01

> BO03651.5prime
GAAGTTATCAGTCGACATGGCGGCCAGGAGCGTGCGGCTAGCGCAGCTTT
TGCTATTTACCCTGCTCTGCGGCTTCGTCGGCCTGTCAGCCGCCAAGCAC
CTGGACCTGGATGGTATCCACCACCACCAGCACCACCTGCACAGCGCCAC
CACGCACCACAGACGTCGCCTACAGCGGGACTCGCGGGCGAAGGACGCCG
TTGGGGGATCGACCCACCAGTGTGATGCCGTCAAGAGCTACTTCGAATCG
ATCGACATCAAGTCGAGTGGGACTTACAGCGAAAAAGGCGCCATTTGTGG
CGGAAACTGCTGCAACAATGCCACGGAGCTGGAGCTGCGGGACAAAGCCG
CCGGAATGTTCGAGCAACTGCTTCATCATCACACCAGCAGCCTGCGCGGA
GTCCTCGAGACGAATGCCAAACAGTTCCAAAGTCACGTCCTGGAATTGGC
GCAGATTTCGGAGAACATGACCCACTCGCTCTTTTCGAAGGTTTATACCC
GTATGGTGCCTTCATCGCGTATGATGATCCATCAACTGTACACCGAAATC
ATGAACCATCTGATTTACACCTCCAACTATACGAACAGCAATGGCCAACT
GGGCAGGCGAGGAATTGGCAGTGTCCAGAGCAACTTGGAGGAGGCTGTCA
GGCACTTCTTTGTTCAGTTGTTCCCCGTGGCCTACCACCAGATGGTCCAT
CTGTCCAAGAACAATTTGGGGGACTTGCACGAGGACTACGTTAACTGCCT
GCAGCACAACTT

BO03651.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4974-PA 1881 dally-RA 1..746 17..762 3705 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:17:47
Subject Length Description Subject Range Query Range Score Percent Strand
dally-RB 4483 CG4974-RB 729..1474 17..762 3715 99.9 Plus
dally-RA 3444 CG4974-RA 729..1474 17..762 3715 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8828233..8828504 17..288 1360 100 Plus
3L 28110227 3L 8886497..8886703 556..762 1020 99.5 Plus
3L 28110227 3L 8877156..8877303 286..433 740 100 Plus
3L 28110227 3L 8886275..8886398 432..555 620 100 Plus
Blast to na_te.dros performed on 2015-02-11 02:17:46 has no hits.

BO03651.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:45:54 Download gff for BO03651.5prime
Subject Subject Range Query Range Percent Splice Strand
dally-PA 1..746 17..762 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:51:00 Download gff for BO03651.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4974-PA 1..746 17..762 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:45:33 Download gff for BO03651.5prime
Subject Subject Range Query Range Percent Splice Strand
dally-RA 721..1474 9..762 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:27:07 Download gff for BO03651.5prime
Subject Subject Range Query Range Percent Splice Strand
dally-RA 721..1474 9..762 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:27:07 Download gff for BO03651.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8886275..8886398 432..555 100 -> Plus
3L 8886497..8886703 556..762 99   Plus
3L 8828225..8828503 9..287 98 -> Plus
3L 8877158..8877301 288..431 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:45:33 Download gff for BO03651.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8879375..8879498 432..555 100 -> Plus
arm_3L 8821325..8821603 9..287 98 -> Plus
arm_3L 8870258..8870401 288..431 100 -> Plus
arm_3L 8879597..8879803 556..762 99   Plus

BO03651.complete Sequence

1915 bp assembled on 2006-10-10

GenBank Submission: FJ638622

> BO03651.complete
GAAGTTATCAGTCGACATGGCGGCCAGGAGCGTGCGGCTAGCGCAGCTTT
TGCTATTTACCCTGCTCTGCGGCTTCGTCGGCCTGTCAGCCGCCAAGCAC
CTGGACCTGGATGGTATCCACCACCACCAGCACCACCTGCACAGCGCCAC
CACGCACCACAGACGTCGCCTACAGCGGGACTCGCGGGCGAAGGACGCCG
TTGGGGGATCGACCCACCAGTGTGATGCCGTCAAGAGCTACTTCGAATCG
ATCGACATCAAGTCGAGTGGGACTTACAGCGAAAAAGGCGCCATTTGTGG
CGGAAACTGCTGCAACAATGCCACGGAGCTGGAGCTGCGGGACAAAGCCG
CCGGAATGTTCGAGCAACTGCTTCATCATCACACCAGCAGCCTGCGCGGA
GTCCTCGAGACGAATGCCAAACAGTTCCAAAGTCACGTCCTGGAATTGGC
GCAGATTTCGGAGAACATGACCCACTCGCTCTTTTCGAAGGTTTATACCC
GTATGGTGCCTTCATCGCGTATGATGATCCATCAACTGTACACCGAAATC
ATGAACCATCTGATTTACACCTCCAACTATACGAACAGCAATGGCCAACT
GGGCAGGCGAGGAATTGGCAGTGTCCAGAGCAACTTGGAGGAGGCTGTCA
GGCACTTCTTTGTTCAGTTGTTCCCCGTGGCCTACCACCAGATGGTCCAT
CTGTCCAAGAACAATTTGGGTGACTTGCACGAGGACTACGTTAACTGCCT
GCAGCACAACTTCGACGAGATGCATCCATTCGGGGACATTCCCCAGCAAG
TGCAGTCCAACTTGGGCAAGAGTGTCCATATGTCCAATGTCTTCATGAAT
GCCCTGCTCCAGGCCGCCGAGGTCCTCAGCGAAGCGGATGCCCTTTATGG
CGAACAACTGACGGACACGTGCAAACTGCATCTCCTCAAGATGCACTACT
GCCCCAACTGCAATGGACACCATTCAAGTTCTAGGAGCGAAACGAAATTG
TGCTACGGCTACTGCAAGAACGTAATGCGCGGCTGTTCGGCGGAATATGC
CGGACTACTGGACAGTCCCTGGTCAGGTGTAGTCGACTCCCTGAACAATC
TGGTCACCACCCATATTCTCTCGGACACCGGCATCATTAATGTCATCAAA
CACCTGCAGACTTATTTCTCTGAGGCAATCATGGCTGCCATGCACAATGG
GCCTGAACTGGAAAAAAAGGTAAAGAAGACATGTGGCACGCCCAGCCTGA
CGCCCTATTCGTCCGGAGAACCGGATGCGCGGCCTCCGCCCCACAAGAAC
AACGTAAAGTGGGCCACTGACCCGGATCCGGGCATGGTCCTCTTCCTGTC
CACCATCGACAAGAGCAAGGAGTTCTACACGACCATCGTGGACAACTTCT
GCGATGAGCAACAGCACTCTCGTGACGATCACTCCTGCTGGTCAGGCGAT
CGTTTCGGGGACTACACTCAGCTGCTGATTAATCCGGGCACTGATAGCCA
GCGATATAATCCCGAGGTGCCCTTCAATGCGAAGGCTCAGACCGGCAAGC
TGAACGAGCTGGTCGACAAGCTCTTCAAGATTCGCAAGAGCATTGGAGCT
GCGGCACCTTCCAACAGCATACAGGCGACGCACGACATCCAGAATGATAT
GGGTGAGGGCTCCGGCGGCGGAGAAGGTCAGATCGGCGACGATGAGGAGG
AGTATGGAGGCGCACATGGTTCCGGAGATGGTTCCGGCGATGGACCCCAT
ACGCCCATCGAGGAATCCGAAGGCACCACCACCAACGAAGTGGAGTCGCG
TGACAGCGGCAAGACCAGTGGGTCCAACCCACTGGAAGGCACCGCGACGT
GGATGCTCCTCACTCTAGTCACAATGCTCTTTAGTAGCTGTAGTAAAGCA
AGCTTTCTAGACCAT

BO03651.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:30:06
Subject Length Description Subject Range Query Range Score Percent Strand
dally-RB 1881 CG4974-PB 1..1878 17..1894 9390 100 Plus
dally-RA 1881 CG4974-PA 1..1878 17..1894 9390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
dally-RB 4483 CG4974-RB 729..2610 17..1898 9395 99.9 Plus
dally-RA 3444 CG4974-RA 729..2610 17..1898 9395 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:30:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8886497..8886970 556..1029 2370 100 Plus
3L 28110227 3L 8828233..8828504 17..288 1360 100 Plus
3L 28110227 3L 8888652..8888860 1396..1604 1045 100 Plus
3L 28110227 3L 8887096..8887290 1029..1223 975 100 Plus
3L 28110227 3L 8887957..8888134 1218..1395 890 100 Plus
3L 28110227 3L 8889163..8889319 1742..1898 770 99.4 Plus
3L 28110227 3L 8877156..8877303 286..433 740 100 Plus
3L 28110227 3L 8888923..8889063 1603..1743 705 100 Plus
3L 28110227 3L 8886275..8886398 432..555 620 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:30:05 has no hits.

BO03651.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:08 Download gff for BO03651.complete
Subject Subject Range Query Range Percent Splice Strand
dally-RA 1..1881 17..1897 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:52:52 Download gff for BO03651.complete
Subject Subject Range Query Range Percent Splice Strand
dally-RA 728..2609 17..1899 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:09 Download gff for BO03651.complete
Subject Subject Range Query Range Percent Splice Strand
dally-RA 729..2610 17..1899 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:09 Download gff for BO03651.complete
Subject Subject Range Query Range Percent Splice Strand
dally-RA 720..2615 9..1904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:52 Download gff for BO03651.complete
Subject Subject Range Query Range Percent Splice Strand
dally-RA 729..2610 17..1899 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:52 Download gff for BO03651.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8889164..8889319 1743..1899 98   Plus
3L 8828233..8828503 17..287 100 -> Plus
3L 8877158..8877301 288..431 100 -> Plus
3L 8886275..8886398 432..555 100 -> Plus
3L 8886497..8886970 556..1029 100 -> Plus
3L 8887097..8887286 1030..1219 100 -> Plus
3L 8887959..8888134 1220..1395 100 -> Plus
3L 8888652..8888859 1396..1603 100 -> Plus
3L 8888924..8889062 1604..1742 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:09 Download gff for BO03651.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8882024..8882162 1604..1742 100 -> Plus
arm_3L 8882264..8882419 1743..1899 98   Plus
arm_3L 8881752..8881959 1396..1603 100 -> Plus
arm_3L 8879597..8880070 556..1029 100 -> Plus
arm_3L 8880197..8880386 1030..1219 100 -> Plus
arm_3L 8821333..8821603 17..287 100 -> Plus
arm_3L 8870258..8870401 288..431 100 -> Plus
arm_3L 8879375..8879498 432..555 100 -> Plus
arm_3L 8881059..8881234 1220..1395 100 -> Plus

BO03651.pep Sequence

Translation from 16 to 1915

> BO03651.pep
MAARSVRLAQLLLFTLLCGFVGLSAAKHLDLDGIHHHQHHLHSATTHHRR
RLQRDSRAKDAVGGSTHQCDAVKSYFESIDIKSSGTYSEKGAICGGNCCN
NATELELRDKAAGMFEQLLHHHTSSLRGVLETNAKQFQSHVLELAQISEN
MTHSLFSKVYTRMVPSSRMMIHQLYTEIMNHLIYTSNYTNSNGQLGRRGI
GSVQSNLEEAVRHFFVQLFPVAYHQMVHLSKNNLGDLHEDYVNCLQHNFD
EMHPFGDIPQQVQSNLGKSVHMSNVFMNALLQAAEVLSEADALYGEQLTD
TCKLHLLKMHYCPNCNGHHSSSRSETKLCYGYCKNVMRGCSAEYAGLLDS
PWSGVVDSLNNLVTTHILSDTGIINVIKHLQTYFSEAIMAAMHNGPELEK
KVKKTCGTPSLTPYSSGEPDARPPPHKNNVKWATDPDPGMVLFLSTIDKS
KEFYTTIVDNFCDEQQHSRDDHSCWSGDRFGDYTQLLINPGTDSQRYNPE
VPFNAKAQTGKLNELVDKLFKIRKSIGAAAPSNSIQATHDIQNDMGEGSG
GGEGQIGDDEEEYGGAHGSGDGSGDGPHTPIEESEGTTTNEVESRDSGKT
SGSNPLEGTATWMLLTLVTMLFSSCSKASFLDH

BO03651.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
dally-PB 626 CG4974-PB 1..626 1..626 3342 100 Plus
dally-PA 626 CG4974-PA 1..626 1..626 3342 100 Plus
dlp-PC 764 CG32146-PC 116..397 96..411 256 24.7 Plus
dlp-PA 765 CG32146-PA 116..397 96..411 256 24.7 Plus