Clone Sequence Records
BO03651.3prime Sequence
659 bp (651 high quality bases) assembled on 2005-12-01
> BO03651.3prime
ATGGTCTAGAAAGCTTGCTTTACTACAGCTACTAAAGAGCATTGTGACTA
GAGTGAGGAGCATCCACGTCGCGGTGCCTTCCAGTGGGTTGGACCCACTG
GTCTTGCCGCTGTCACGCGACTCCACTTCGTTGGTGGTGGTGCCTTCGGA
TTCCTCGATGGGCGTATGGGGTCCATCGCCGGAACCATCTCCGGAACCAT
GTGCGCCTCCATACTCCTCCTCATCGTCGCCGATCTGACCTTCTCCGCCG
CCGGAGCCCTCACCCATATCATTCTGGATGTCGTGCGTCGCCTGTATGCT
GTTGGAAGGTGCCGCAGCTCCAATGCTCTTGCGAATCTTGAAGAGCTTGT
CGACCAGCTCGTTCAGCTTGCCGGTCTGAGCCTTCGCATTGAAGGGCACC
TCGGGATTATATCGCTGGCTATCAGTGCCCGGATTAATCAGCAGCTGAGT
GTAGTCCCCGAAACGATCGCCTGACCAGCAGGAGTGATCGTCACGAGAGT
GCTGTTGCTCATCGCAGAAGTTGTCCACGATGGTCGTGTAGAACTCCTTG
CTCTTGTCGATGGTGGACAGGAAGAGGACCATGCCCGGATCCGGGTCAGT
GGCCCACTTTACGTTGTTCTTGTGGGGCGGAGGCCGCGCATCCGGTTCTC
CGGAAGAAT
BO03651.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4974-PA | 1881 | dally-RA | 1246..1878 | 654..22 | 3165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:27:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dally-RB | 4483 | CG4974-RB | 1969..2610 | 659..18 | 3180 | 99.7 | Minus |
dally-RA | 3444 | CG4974-RA | 1969..2610 | 659..18 | 3180 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:27:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8888652..8888860 | 520..312 | 1045 | 100 | Minus |
3L | 28110227 | 3L | 8889163..8889319 | 174..18 | 770 | 99.4 | Minus |
3L | 28110227 | 3L | 8888923..8889063 | 313..173 | 705 | 100 | Minus |
3L | 28110227 | 3L | 8887996..8888134 | 659..521 | 680 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:27:28 has no hits.
BO03651.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:45:53 Download gff for
BO03651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dally-PA | 1241..1881 | 19..659 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:50:59 Download gff for
BO03651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4974-PA | 1241..1881 | 19..659 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:56:48 Download gff for
BO03651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dally-RA | 1969..2616 | 12..659 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:11:15 Download gff for
BO03651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dally-RA | 1969..2616 | 12..659 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:11:15 Download gff for
BO03651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8887996..8888134 | 521..659 | 99 | -> | Minus |
3L | 8888652..8888859 | 313..520 | 100 | -> | Minus |
3L | 8888924..8889062 | 174..312 | 100 | -> | Minus |
3L | 8889164..8889325 | 12..173 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:56:48 Download gff for
BO03651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8881096..8881234 | 521..659 | 99 | -> | Minus |
arm_3L | 8881752..8881959 | 313..520 | 100 | -> | Minus |
arm_3L | 8882024..8882162 | 174..312 | 100 | -> | Minus |
arm_3L | 8882264..8882425 | 12..173 | 98 | | Minus |
BO03651.5prime Sequence
762 bp (718 high quality bases) assembled on 2005-12-01
> BO03651.5prime
GAAGTTATCAGTCGACATGGCGGCCAGGAGCGTGCGGCTAGCGCAGCTTT
TGCTATTTACCCTGCTCTGCGGCTTCGTCGGCCTGTCAGCCGCCAAGCAC
CTGGACCTGGATGGTATCCACCACCACCAGCACCACCTGCACAGCGCCAC
CACGCACCACAGACGTCGCCTACAGCGGGACTCGCGGGCGAAGGACGCCG
TTGGGGGATCGACCCACCAGTGTGATGCCGTCAAGAGCTACTTCGAATCG
ATCGACATCAAGTCGAGTGGGACTTACAGCGAAAAAGGCGCCATTTGTGG
CGGAAACTGCTGCAACAATGCCACGGAGCTGGAGCTGCGGGACAAAGCCG
CCGGAATGTTCGAGCAACTGCTTCATCATCACACCAGCAGCCTGCGCGGA
GTCCTCGAGACGAATGCCAAACAGTTCCAAAGTCACGTCCTGGAATTGGC
GCAGATTTCGGAGAACATGACCCACTCGCTCTTTTCGAAGGTTTATACCC
GTATGGTGCCTTCATCGCGTATGATGATCCATCAACTGTACACCGAAATC
ATGAACCATCTGATTTACACCTCCAACTATACGAACAGCAATGGCCAACT
GGGCAGGCGAGGAATTGGCAGTGTCCAGAGCAACTTGGAGGAGGCTGTCA
GGCACTTCTTTGTTCAGTTGTTCCCCGTGGCCTACCACCAGATGGTCCAT
CTGTCCAAGAACAATTTGGGGGACTTGCACGAGGACTACGTTAACTGCCT
GCAGCACAACTT
BO03651.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4974-PA | 1881 | dally-RA | 1..746 | 17..762 | 3705 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:17:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dally-RB | 4483 | CG4974-RB | 729..1474 | 17..762 | 3715 | 99.9 | Plus |
dally-RA | 3444 | CG4974-RA | 729..1474 | 17..762 | 3715 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:17:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8828233..8828504 | 17..288 | 1360 | 100 | Plus |
3L | 28110227 | 3L | 8886497..8886703 | 556..762 | 1020 | 99.5 | Plus |
3L | 28110227 | 3L | 8877156..8877303 | 286..433 | 740 | 100 | Plus |
3L | 28110227 | 3L | 8886275..8886398 | 432..555 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:17:46 has no hits.
BO03651.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:45:54 Download gff for
BO03651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dally-PA | 1..746 | 17..762 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:51:00 Download gff for
BO03651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4974-PA | 1..746 | 17..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:45:33 Download gff for
BO03651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dally-RA | 721..1474 | 9..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:27:07 Download gff for
BO03651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dally-RA | 721..1474 | 9..762 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:27:07 Download gff for
BO03651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8886275..8886398 | 432..555 | 100 | -> | Plus |
3L | 8886497..8886703 | 556..762 | 99 | | Plus |
3L | 8828225..8828503 | 9..287 | 98 | -> | Plus |
3L | 8877158..8877301 | 288..431 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:45:33 Download gff for
BO03651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8879375..8879498 | 432..555 | 100 | -> | Plus |
arm_3L | 8821325..8821603 | 9..287 | 98 | -> | Plus |
arm_3L | 8870258..8870401 | 288..431 | 100 | -> | Plus |
arm_3L | 8879597..8879803 | 556..762 | 99 | | Plus |
BO03651.complete Sequence
1915 bp assembled on 2006-10-10
GenBank Submission: FJ638622
> BO03651.complete
GAAGTTATCAGTCGACATGGCGGCCAGGAGCGTGCGGCTAGCGCAGCTTT
TGCTATTTACCCTGCTCTGCGGCTTCGTCGGCCTGTCAGCCGCCAAGCAC
CTGGACCTGGATGGTATCCACCACCACCAGCACCACCTGCACAGCGCCAC
CACGCACCACAGACGTCGCCTACAGCGGGACTCGCGGGCGAAGGACGCCG
TTGGGGGATCGACCCACCAGTGTGATGCCGTCAAGAGCTACTTCGAATCG
ATCGACATCAAGTCGAGTGGGACTTACAGCGAAAAAGGCGCCATTTGTGG
CGGAAACTGCTGCAACAATGCCACGGAGCTGGAGCTGCGGGACAAAGCCG
CCGGAATGTTCGAGCAACTGCTTCATCATCACACCAGCAGCCTGCGCGGA
GTCCTCGAGACGAATGCCAAACAGTTCCAAAGTCACGTCCTGGAATTGGC
GCAGATTTCGGAGAACATGACCCACTCGCTCTTTTCGAAGGTTTATACCC
GTATGGTGCCTTCATCGCGTATGATGATCCATCAACTGTACACCGAAATC
ATGAACCATCTGATTTACACCTCCAACTATACGAACAGCAATGGCCAACT
GGGCAGGCGAGGAATTGGCAGTGTCCAGAGCAACTTGGAGGAGGCTGTCA
GGCACTTCTTTGTTCAGTTGTTCCCCGTGGCCTACCACCAGATGGTCCAT
CTGTCCAAGAACAATTTGGGTGACTTGCACGAGGACTACGTTAACTGCCT
GCAGCACAACTTCGACGAGATGCATCCATTCGGGGACATTCCCCAGCAAG
TGCAGTCCAACTTGGGCAAGAGTGTCCATATGTCCAATGTCTTCATGAAT
GCCCTGCTCCAGGCCGCCGAGGTCCTCAGCGAAGCGGATGCCCTTTATGG
CGAACAACTGACGGACACGTGCAAACTGCATCTCCTCAAGATGCACTACT
GCCCCAACTGCAATGGACACCATTCAAGTTCTAGGAGCGAAACGAAATTG
TGCTACGGCTACTGCAAGAACGTAATGCGCGGCTGTTCGGCGGAATATGC
CGGACTACTGGACAGTCCCTGGTCAGGTGTAGTCGACTCCCTGAACAATC
TGGTCACCACCCATATTCTCTCGGACACCGGCATCATTAATGTCATCAAA
CACCTGCAGACTTATTTCTCTGAGGCAATCATGGCTGCCATGCACAATGG
GCCTGAACTGGAAAAAAAGGTAAAGAAGACATGTGGCACGCCCAGCCTGA
CGCCCTATTCGTCCGGAGAACCGGATGCGCGGCCTCCGCCCCACAAGAAC
AACGTAAAGTGGGCCACTGACCCGGATCCGGGCATGGTCCTCTTCCTGTC
CACCATCGACAAGAGCAAGGAGTTCTACACGACCATCGTGGACAACTTCT
GCGATGAGCAACAGCACTCTCGTGACGATCACTCCTGCTGGTCAGGCGAT
CGTTTCGGGGACTACACTCAGCTGCTGATTAATCCGGGCACTGATAGCCA
GCGATATAATCCCGAGGTGCCCTTCAATGCGAAGGCTCAGACCGGCAAGC
TGAACGAGCTGGTCGACAAGCTCTTCAAGATTCGCAAGAGCATTGGAGCT
GCGGCACCTTCCAACAGCATACAGGCGACGCACGACATCCAGAATGATAT
GGGTGAGGGCTCCGGCGGCGGAGAAGGTCAGATCGGCGACGATGAGGAGG
AGTATGGAGGCGCACATGGTTCCGGAGATGGTTCCGGCGATGGACCCCAT
ACGCCCATCGAGGAATCCGAAGGCACCACCACCAACGAAGTGGAGTCGCG
TGACAGCGGCAAGACCAGTGGGTCCAACCCACTGGAAGGCACCGCGACGT
GGATGCTCCTCACTCTAGTCACAATGCTCTTTAGTAGCTGTAGTAAAGCA
AGCTTTCTAGACCAT
BO03651.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:30:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dally-RB | 1881 | CG4974-PB | 1..1878 | 17..1894 | 9390 | 100 | Plus |
dally-RA | 1881 | CG4974-PA | 1..1878 | 17..1894 | 9390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:30:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dally-RB | 4483 | CG4974-RB | 729..2610 | 17..1898 | 9395 | 99.9 | Plus |
dally-RA | 3444 | CG4974-RA | 729..2610 | 17..1898 | 9395 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:30:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8886497..8886970 | 556..1029 | 2370 | 100 | Plus |
3L | 28110227 | 3L | 8828233..8828504 | 17..288 | 1360 | 100 | Plus |
3L | 28110227 | 3L | 8888652..8888860 | 1396..1604 | 1045 | 100 | Plus |
3L | 28110227 | 3L | 8887096..8887290 | 1029..1223 | 975 | 100 | Plus |
3L | 28110227 | 3L | 8887957..8888134 | 1218..1395 | 890 | 100 | Plus |
3L | 28110227 | 3L | 8889163..8889319 | 1742..1898 | 770 | 99.4 | Plus |
3L | 28110227 | 3L | 8877156..8877303 | 286..433 | 740 | 100 | Plus |
3L | 28110227 | 3L | 8888923..8889063 | 1603..1743 | 705 | 100 | Plus |
3L | 28110227 | 3L | 8886275..8886398 | 432..555 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:30:05 has no hits.
BO03651.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:08 Download gff for
BO03651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dally-RA | 1..1881 | 17..1897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:52:52 Download gff for
BO03651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dally-RA | 728..2609 | 17..1899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:09 Download gff for
BO03651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dally-RA | 729..2610 | 17..1899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:09 Download gff for
BO03651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dally-RA | 720..2615 | 9..1904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:52 Download gff for
BO03651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dally-RA | 729..2610 | 17..1899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:52 Download gff for
BO03651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8889164..8889319 | 1743..1899 | 98 | | Plus |
3L | 8828233..8828503 | 17..287 | 100 | -> | Plus |
3L | 8877158..8877301 | 288..431 | 100 | -> | Plus |
3L | 8886275..8886398 | 432..555 | 100 | -> | Plus |
3L | 8886497..8886970 | 556..1029 | 100 | -> | Plus |
3L | 8887097..8887286 | 1030..1219 | 100 | -> | Plus |
3L | 8887959..8888134 | 1220..1395 | 100 | -> | Plus |
3L | 8888652..8888859 | 1396..1603 | 100 | -> | Plus |
3L | 8888924..8889062 | 1604..1742 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:09 Download gff for
BO03651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8882024..8882162 | 1604..1742 | 100 | -> | Plus |
arm_3L | 8882264..8882419 | 1743..1899 | 98 | | Plus |
arm_3L | 8881752..8881959 | 1396..1603 | 100 | -> | Plus |
arm_3L | 8879597..8880070 | 556..1029 | 100 | -> | Plus |
arm_3L | 8880197..8880386 | 1030..1219 | 100 | -> | Plus |
arm_3L | 8821333..8821603 | 17..287 | 100 | -> | Plus |
arm_3L | 8870258..8870401 | 288..431 | 100 | -> | Plus |
arm_3L | 8879375..8879498 | 432..555 | 100 | -> | Plus |
arm_3L | 8881059..8881234 | 1220..1395 | 100 | -> | Plus |
BO03651.pep Sequence
Translation from 16 to 1915
> BO03651.pep
MAARSVRLAQLLLFTLLCGFVGLSAAKHLDLDGIHHHQHHLHSATTHHRR
RLQRDSRAKDAVGGSTHQCDAVKSYFESIDIKSSGTYSEKGAICGGNCCN
NATELELRDKAAGMFEQLLHHHTSSLRGVLETNAKQFQSHVLELAQISEN
MTHSLFSKVYTRMVPSSRMMIHQLYTEIMNHLIYTSNYTNSNGQLGRRGI
GSVQSNLEEAVRHFFVQLFPVAYHQMVHLSKNNLGDLHEDYVNCLQHNFD
EMHPFGDIPQQVQSNLGKSVHMSNVFMNALLQAAEVLSEADALYGEQLTD
TCKLHLLKMHYCPNCNGHHSSSRSETKLCYGYCKNVMRGCSAEYAGLLDS
PWSGVVDSLNNLVTTHILSDTGIINVIKHLQTYFSEAIMAAMHNGPELEK
KVKKTCGTPSLTPYSSGEPDARPPPHKNNVKWATDPDPGMVLFLSTIDKS
KEFYTTIVDNFCDEQQHSRDDHSCWSGDRFGDYTQLLINPGTDSQRYNPE
VPFNAKAQTGKLNELVDKLFKIRKSIGAAAPSNSIQATHDIQNDMGEGSG
GGEGQIGDDEEEYGGAHGSGDGSGDGPHTPIEESEGTTTNEVESRDSGKT
SGSNPLEGTATWMLLTLVTMLFSSCSKASFLDH
BO03651.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dally-PB | 626 | CG4974-PB | 1..626 | 1..626 | 3342 | 100 | Plus |
dally-PA | 626 | CG4974-PA | 1..626 | 1..626 | 3342 | 100 | Plus |
dlp-PC | 764 | CG32146-PC | 116..397 | 96..411 | 256 | 24.7 | Plus |
dlp-PA | 765 | CG32146-PA | 116..397 | 96..411 | 256 | 24.7 | Plus |