Clone BO03652 Report

Search the DGRC for BO03652

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:36
Well:52
Vector:pDNR-Dual
Associated Gene/Transcripthop-RA
Protein status:BO03652.pep: validated full length
Sequenced Size:3568

Clone Sequence Records

BO03652.3prime Sequence

477 bp (407 high quality bases) assembled on 2005-12-01

> BO03652.3prime
ATGGTCTAGAAAGCTTGCTCTCTCGGCATCCGTCGGCTGATTCGGCGGCG
ACTGGTGTCCATCTGTCGGGTGCGTCACCTTGGTGGCCACCTCCCTTGTG
ATGATGTCCACAATGGTCGCGAAACTGGGTCGCGAACGGGGCGTGGCATG
CCAGCACAGCTGCATCAGGTCGTAAATGAAATCGGGACAACTGGCCGGAC
GATTTAAGCGTTCGCCGCTCTGAAGGCGATTGAGGAAATCCTCCTGCGAT
GTCTGGATCGGCACCAAATTGGGCTCCTCGCCGCGCGAAAACATTTCGAA
GAGCGTCACGCCATAGCTCCAAACATCCGAATACGATGAGAATCTGCAGG
TGGAGATGGCCTCCGGAGAGTACCATCTAATGGGAATATCACGCTTGCTT
TTCGCATAGTAATATCCATCGGAATTGGCGAATTGCGCCAGGCCGAAGTC
TGAGATTTTTGACGCAGTCACCATCGC

BO03652.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1594-PA 3534 hop-RA 3094..3531 459..22 2190 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
hop-RA 5055 CG1594-RA 3713..4167 477..22 2255 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11361818..11362005 22..209 940 100 Plus
X 23542271 X 11362071..11362236 209..374 830 100 Plus
X 23542271 X 11362305..11362410 371..477 485 99.1 Plus
Blast to na_te.dros performed on 2015-02-04 19:11:21 has no hits.

BO03652.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:45:55 Download gff for BO03652.3prime
Subject Subject Range Query Range Percent Splice Strand
hop-PA 3077..3534 19..477 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:51:01 Download gff for BO03652.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1594-PA 3077..3534 19..477 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:14:23 Download gff for BO03652.3prime
Subject Subject Range Query Range Percent Splice Strand
hop-RA 3713..4170 19..477 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:29:29 Download gff for BO03652.3prime
Subject Subject Range Query Range Percent Splice Strand
hop-RA 3713..4170 19..477 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:29:29 Download gff for BO03652.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11361815..11362004 19..208 99 <- Plus
X 11362071..11362235 209..373 100 <- Plus
X 11362308..11362410 374..477 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:14:23 Download gff for BO03652.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11255848..11256037 19..208 99 <- Plus
arm_X 11256104..11256268 209..373 100 <- Plus
arm_X 11256341..11256443 374..477 99   Plus

BO03652.5prime Sequence

491 bp (490 high quality bases) assembled on 2005-12-01

> BO03652.5prime
GAAGTTATCAGTCGACATGGCCCTGGCCAACGGGGGAGAGGATAGAATGG
ACGACAGCAGCAGCGGACGCACTTCGCTGGCGGACAGCGCCAGCCTGACG
AACTCCTCGCTGCGCAGCGGCACCTCCTCGCAGAGCATCCACACCAACGA
TGGCACAATCCGTGTGTTCAACTTCACCACCGGCGAATTTGAGCGTTTCC
ATCCCAACATGCTGTGCGAGGAGATCTGCAATACGATGTGCCGCCAGCTG
GGCATTGCACCAATTGCCCAGCTGCTCTACGGAATACGGGAGCACTCGAC
ATCGCGACGTCCCTCGCCGCTGGTGCGTTTGGATCTGACGTGGTGCCTGC
CCGGCGAGCGACTCAACTGCCAGCTGGTCTATTGCTTTCGGATGCGTTTC
CGTGTGCCCGAATTGGATAGCCAGCTGGAGTTGATCGATGGACGGAGCCA
CAAGTTCCTCTACCGCCAAATGCGCTACGATATGCGGACCG

BO03652.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG1594-PA 3534 hop-RA 1..475 17..491 2375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
hop-RA 5055 CG1594-RA 636..1111 16..491 2380 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11366988..11367463 491..16 2380 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:41:31 has no hits.

BO03652.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:45:55 Download gff for BO03652.5prime
Subject Subject Range Query Range Percent Splice Strand
hop-PA 1..475 17..491 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:51:02 Download gff for BO03652.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1594-PA 1..475 17..491 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:50:49 Download gff for BO03652.5prime
Subject Subject Range Query Range Percent Splice Strand
hop-RA 629..1111 7..491 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:21:57 Download gff for BO03652.5prime
Subject Subject Range Query Range Percent Splice Strand
hop-RA 629..1111 7..491 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:21:57 Download gff for BO03652.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11366988..11367470 7..491 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:50:49 Download gff for BO03652.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11261021..11261503 7..491 99   Minus

BO03652.complete Sequence

3568 bp assembled on 2007-06-21

GenBank Submission: FJ629578

> BO03652.complete
GAAGTTATCAGTCGACATGGCCCTGGCCAACGGGGGAGAGGATAGAATGG
ACGACAGCAGCAGCGGACGCACTTCGCTGGCGGACAGCGCCAGCCTGACG
AACTCCTCGCTGCGCAGCGGCACCTCCTCGCAGAGCATCCACACCAACGA
TGGCACAATCCGTGTGTTCAACTTCACCACCGGCGAATTTGAGCGTTTCC
ATCCCAACATGCTGTGCGAGGAGATCTGCAATACGATGTGCCGCCAGCTG
GGCATTGCACCAATTGCCCAGCTGCTCTACGGAATACGGGAGCACTCGAC
ATCGCGACGTCCCTCGCCGCTGGTGCGTTTGGATCTGACGTGGTGCCTGC
CCGGCGAGCGACTCAACTGCCAGCTGGTCTATTGCTTTCGGATGCGTTTC
CGTGTGCCCGAATTGGATAGCCAGCTGGAGTTGATCGATGGACGGAGCCA
CAAGTTCCTCTACCGCCAAATGCGCTACGATATGCGGACCGAGCAAATCC
CGGAGATTCGCTATCCGGAGCACAAGGACAAATCAACGGGACTGGCCGTG
ATGGATATGCTAATCGACGATCAGGAACAGTCGGAGGATCAGCAGGCGAT
GCGCTCCATCGAGAAGCTTTACAAACTGTATTTGCCACCGAGCTTGTGGC
GCGCCCACAGCTTCTTTGTGGGCTCCAAGATACGTGAGGTTTTCCGCAGT
CTAAAAGCGAATTCGCTGAGTGTGGAGCGTTTGAAGTGGCACTATGTGCA
TCAGGTATCCCATTTGGCGCCCACCTATATGACCGAACAGTTCACCTGCA
CCGTTCAGTATCTGCCCAACGAGGAGGTGGCCCGCGGTAGCGGACCCATC
GGCACCAGTCTGGCCCACTCGACGTCGACGCTGGCCAGTTCTGGATCGAC
CAACACTCTGTCCACGCTCACCACCAACACCAATTCCGTTGCACTCGGCG
GCAGTGGCAAGAAGGCCAAACGACGTTCCACCAGCGGTGGAATCGATGTC
TATGTGCGAGTCTTTCCACACGATTCCCTGGAGCCTGGACTCAAGGTGGC
CAGGGTCACCTCCGAGGCCACACTCAAGTGGATCCTTGTTGGCGCCGTGG
AAGGAATTTTTATGATCTCCAAAATCAACGACACCTCTGTGCGGCTGGAA
ATCGTTGGTCTGCCCAAGGGCTACGAGATGCAGTTTCAGACGGAGAAGGA
GATGAAGTCCTTCATCTCCTACCTGGGTATCTACATCAGATTGTCGAGCA
AATGGATGCAGGATCTGTGCCATTCGTACCGCACGCCCTCCCTGGAGGAG
CTGAGCTCCCTCCACTGCCATGGTCCAATCGGCGGTGCCTACTCGCTGAT
GAAGCTGCACGAGAACGGTGACAAGTGCGGCAGCTATATTGTGCGTGAAT
GCGATCGAGAATACAACATATACTACATCGATATCAACACCAAAATCATG
GCCAAGAAAACCGATCAGGAACGCTGCAAGACGGAGACATTTAGGATCGT
GCGCAAGGACTCGCAATGGAAGCTAAGCTACAACAACGGCGAGCATGTAC
TAAACTCACTGCACGAAGTGGCGCACATCATTCAAGCGGATAGTCCCGAT
CGCTATCGCATACCCGCCTCCAAATATGACAAGCCGCCGCTGCTGCTACT
GCTGCTGCCAAAGAACCTCAAGGCCAAAAAGACTGACCTCCAGCTGAGCG
AGGCGGAGCTGCAGCGCCGCAATCCGCAGATCTTCAATCCCCGAACGGAT
CTGCAGTGGTATCCAGATTCGATATCGCTTAGCGACGATGGCATGATGTT
TACGATGCGCGGCGATTGGATCCAACAGAGTCCCGTCAAGGATGTGTCCG
TGACGATGAAAATGCTAAAGAGCGATGGCAATTTCATGGAGTTCTTTCGC
TTGGCACAGACCTGGAGCCTCATCCAGTCGCCGCAGTTCCTCAAGCTGTA
CGGCCTAACGCTCGCCGATCCGTACACAATGGTCATGGAGTATTCGCGGT
ATGGTCCGCTCAATAAGTTCCTGCACTCGATGCCCAATGTAACACTGCAT
TGTCTACTGGATCTGATGCATGGATTGGTGCGCGGCATGCACTATTTGGA
GGACAACAAGATTATCCACAATTACATACGATGCAGTAATCTGTACGTGA
CCAAGTACGATCCGAATTCGTACGTGCTAGACGCGAAAATTAGCGATCCC
GGCTATCCGCGTCCCTACCGAGAATCCGACTCGCCATGGATACCTGTTAA
GTATTATCGCAATTTGCAAGCAGCCAAAACGGATCAGTTTGCCCAGCTGT
GGGCCTTCGCTACCACCATATACGAGATCTTCTCGCGCTGCAAGGAAGAT
CTGAGCACACTGCGCCAGGAGCAGCTACTCAGGCAGAAAAATCTCGATGG
CAACATACTCAAGATGCTCGATCAGGACATCTGTCCGGCGCCGATATTCG
AGACAATCATGGATGGATGGTCCGATGATGAGACCAAGCGCTTCAGTCAC
CACGACATTTTCTCGCGTCTCAACACGATCAAGGCGGAAATTCTGCCCAA
TTATATGCCGCCACCCGAGATCGCAACGAATGGAACTGGAGACGAGACCG
TGATCGATAGAAGCGACATACCCTTTCTACCCTTTCCGCGTTCGAATATG
TTGATGGTCATACCGCTGACCAGCGAATGTCGAGTGATCTACAACATGGA
GAACATGATCGGGCGCGGTCATTATGGCACTGTCTACAAGGGTCATCTGG
AGTTCAACGACAAGGATCAGCCGCGCGAGCAGGTTGCCATCAAGATGCTG
AACACCATGCAGGTGTCGACCGATTTTCATCGCGAGATCGGCATCATGCG
CACCCTCAGTCATCCGAACATAGTCAAGTTCAAGTATTGGGCTGAGAAGT
CGCACTGCATCATTATGGAATATCTGCAATCTGGTTCCTTCGACATTTAC
CTGCGTTTCACGGCACCCAATCTCAATAATCCACGGCTCGTCAGCTTCGC
TTTAGATATTGCAAATGGCATGAAATACTTGTCCGACATGGGACTCATCC
ACCGCGACCTGGCCGCCCGCAACATTTTGGTGGACCACAACGGCGATGGT
GACTGCGTCAAAATCTCAGACTTCGGCCTGGCGCAATTCGCCAATTCCGA
TGGATATTACTATGCGAAAAGCAAGCGTGATATTCCCATTAGATGGTACT
CTCCGGAGGCCATCTCCACCTGCAGATTCTCATCGTATTCGGATGTTTGG
AGCTATGGCGTGACGCTCTTCGAAATGTTTTCGCGCGGCGAGGAGCCCAA
TTTGGTGCCGATCCAGACATCGCAGGAGGATTTCCTCAATCGCCTTCAGA
GCGGCGAACGCTTAAATCGTCCGGCCAGTTGTCCCGATTTCATTTACGAC
CTGATGCAGCTGTGCTGGCATGCCACGCCCCGTTCGCGACCCAGTTTCGC
GACCATTGTGGACATCATCACAAGGGAGGTGGCCACCAAGGTGACGCACC
CGACAGATGGACACCAGTCGCCGCCGAATCAGCCGACGGATGCCGAGAGA
GCAAGCTTTCTAGACCAT

BO03652.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
hop-RA 3534 CG1594-PA 1..3531 17..3547 17655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
hop-RA 5055 CG1594-RA 636..4167 16..3547 17660 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11366401..11367463 1078..16 5315 100 Minus
X 23542271 X 11363961..11364426 2229..1764 2330 100 Minus
X 23542271 X 11362991..11363428 3017..2580 2190 100 Minus
X 23542271 X 11363497..11363846 2579..2230 1750 100 Minus
X 23542271 X 11364484..11364803 1766..1447 1600 100 Minus
X 23542271 X 11365033..11365242 1446..1237 1050 100 Minus
X 23542271 X 11361818..11362005 3547..3360 940 100 Minus
X 23542271 X 11362305..11362486 3198..3017 910 100 Minus
X 23542271 X 11362071..11362236 3360..3195 830 100 Minus
X 23542271 X 11365970..11366132 1239..1077 815 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:27:54 has no hits.

BO03652.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:44 Download gff for BO03652.complete
Subject Subject Range Query Range Percent Splice Strand
hop-RA 1..3534 17..3550 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:32 Download gff for BO03652.complete
Subject Subject Range Query Range Percent Splice Strand
hop-RA 628..4169 7..3550 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:05 Download gff for BO03652.complete
Subject Subject Range Query Range Percent Splice Strand
hop-RA 637..4171 17..3552 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:44 Download gff for BO03652.complete
Subject Subject Range Query Range Percent Splice Strand
hop-RA 628..4169 7..3550 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:18 Download gff for BO03652.complete
Subject Subject Range Query Range Percent Splice Strand
hop-RA 637..4171 17..3552 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:18 Download gff for BO03652.complete
Subject Subject Range Query Range Percent Splice Strand
X 11361814..11362004 3361..3552 98 <- Minus
X 11362071..11362235 3196..3360 100 <- Minus
X 11362308..11362486 3017..3195 100 <- Minus
X 11362992..11363428 2580..3016 100 <- Minus
X 11363497..11363846 2230..2579 100 <- Minus
X 11363961..11364423 1767..2229 100 <- Minus
X 11364484..11364803 1447..1766 100 <- Minus
X 11365033..11365239 1240..1446 100 <- Minus
X 11365970..11366130 1079..1239 100 <- Minus
X 11366401..11367462 17..1078 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:05 Download gff for BO03652.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11255847..11256037 3361..3552 98 <- Minus
arm_X 11256104..11256268 3196..3360 100 <- Minus
arm_X 11256341..11256519 3017..3195 100 <- Minus
arm_X 11257025..11257461 2580..3016 100 <- Minus
arm_X 11257530..11257879 2230..2579 100 <- Minus
arm_X 11257994..11258456 1767..2229 100 <- Minus
arm_X 11258517..11258836 1447..1766 100 <- Minus
arm_X 11259066..11259272 1240..1446 100 <- Minus
arm_X 11260003..11260163 1079..1239 100 <- Minus
arm_X 11260434..11261495 17..1078 100   Minus

BO03652.pep Sequence

Translation from 16 to 3568

> BO03652.pep
MALANGGEDRMDDSSSGRTSLADSASLTNSSLRSGTSSQSIHTNDGTIRV
FNFTTGEFERFHPNMLCEEICNTMCRQLGIAPIAQLLYGIREHSTSRRPS
PLVRLDLTWCLPGERLNCQLVYCFRMRFRVPELDSQLELIDGRSHKFLYR
QMRYDMRTEQIPEIRYPEHKDKSTGLAVMDMLIDDQEQSEDQQAMRSIEK
LYKLYLPPSLWRAHSFFVGSKIREVFRSLKANSLSVERLKWHYVHQVSHL
APTYMTEQFTCTVQYLPNEEVARGSGPIGTSLAHSTSTLASSGSTNTLST
LTTNTNSVALGGSGKKAKRRSTSGGIDVYVRVFPHDSLEPGLKVARVTSE
ATLKWILVGAVEGIFMISKINDTSVRLEIVGLPKGYEMQFQTEKEMKSFI
SYLGIYIRLSSKWMQDLCHSYRTPSLEELSSLHCHGPIGGAYSLMKLHEN
GDKCGSYIVRECDREYNIYYIDINTKIMAKKTDQERCKTETFRIVRKDSQ
WKLSYNNGEHVLNSLHEVAHIIQADSPDRYRIPASKYDKPPLLLLLLPKN
LKAKKTDLQLSEAELQRRNPQIFNPRTDLQWYPDSISLSDDGMMFTMRGD
WIQQSPVKDVSVTMKMLKSDGNFMEFFRLAQTWSLIQSPQFLKLYGLTLA
DPYTMVMEYSRYGPLNKFLHSMPNVTLHCLLDLMHGLVRGMHYLEDNKII
HNYIRCSNLYVTKYDPNSYVLDAKISDPGYPRPYRESDSPWIPVKYYRNL
QAAKTDQFAQLWAFATTIYEIFSRCKEDLSTLRQEQLLRQKNLDGNILKM
LDQDICPAPIFETIMDGWSDDETKRFSHHDIFSRLNTIKAEILPNYMPPP
EIATNGTGDETVIDRSDIPFLPFPRSNMLMVIPLTSECRVIYNMENMIGR
GHYGTVYKGHLEFNDKDQPREQVAIKMLNTMQVSTDFHREIGIMRTLSHP
NIVKFKYWAEKSHCIIMEYLQSGSFDIYLRFTAPNLNNPRLVSFALDIAN
GMKYLSDMGLIHRDLAARNILVDHNGDGDCVKISDFGLAQFANSDGYYYA
KSKRDIPIRWYSPEAISTCRFSSYSDVWSYGVTLFEMFSRGEEPNLVPIQ
TSQEDFLNRLQSGERLNRPASCPDFIYDLMQLCWHATPRSRPSFATIVDI
ITREVATKVTHPTDGHQSPPNQPTDAERASFLDH

BO03652.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:44
Subject Length Description Subject Range Query Range Score Percent Strand
hop-PA 1177 CG1594-PA 1..1177 1..1177 6239 100 Plus
Eph-PF 1005 CG1511-PF 710..966 894..1151 436 39.2 Plus
Eph-PB 1047 CG1511-PB 694..950 894..1151 436 39.2 Plus
Eph-PE 1080 CG1511-PE 727..983 894..1151 436 39.2 Plus
Eph-PD 1080 CG1511-PD 743..999 894..1151 436 39.2 Plus