Clone BO03656 Report

Search the DGRC for BO03656

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:36
Well:56
Vector:pDNR-Dual
Associated Gene/Transcriptf-cup-RB
Protein status:BO03656.pep: validated not full length
Sequenced Size:1987

Clone Sequence Records

BO03656.3prime Sequence

780 bp (663 high quality bases) assembled on 2005-12-01

> BO03656.3prime
ATGGTCTAGAAAGCTTGCCTTTGTGGGTATGCGATCGCGCAAATACGACA
TGATGGCGTCAGTGCCCTTCATCAGGATTTGGTGGCGGGGCTGTCGAAAT
GGATTGCCCACCAGCTCCAAGTGAGTTATGTTTGTCAGGTTCCCCAAAAT
TGGTGGCACTGTCTCGATGTCGTTATTGCGCAAATCCAATGTGCTCAAAC
GTCGCATGTTCTGCAGACCCGATACATTTAACATTTTTATGTGGTTCTCA
CTGGCAATGAGGATCTCCAGGCCTTGCAGCTCGTACACACAGTTGGGAAT
ACACGGAAAGCGATTGTTTGCAATGTTTAGTTCACGCAGTGTATTCAAGA
CACCAAACTCCGTGGGCAGGTCATTCAACAGATTGTTGGACAAATTCAAG
AAAGATATACGTGTAAACTGGGAGATGAACTGTGGCACATAGCCGATGAC
ATTGTTGGATAAAACTAGTTCCGTAACTAAATCTTTCATGTGCTGCAGTC
CATTGGGCAAAGTGCTCAGCTGGTTGCGCGCAAAGTCCACCACATGCACA
CCCTCATCCCTGGCGATCTGGAACACCTGGTCAGGCACTGACGTGAGCTC
CTCCAGATTGACAGCTAATGTACGTGTATGTCGTAGTTTGTATCTATCCG
GAAAGTTTCCGGGTATATCACCATCGTCCATTTGGCCACCACGCAAACGG
GTAACACTGATGCCCGCTGACGTGGAAGCGTCCTCGACGCCACCTCCCCT
CCTCCTTGGCCTTCGCCACAGCTCTATCGT

BO03656.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9611-PA 2082 CG9611-RA 1353..2079 748..22 3610 99.8 Minus
CG9611-PB 1953 CG9611-RB 1224..1950 748..22 3610 99.8 Minus
CG9611-PA 2082 CG9611-RA 1322..1355 780..747 170 100 Minus
CG9611-PB 1953 CG9611-RB 1193..1226 780..747 170 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:32:47
Subject Length Description Subject Range Query Range Score Percent Strand
f-cup-RE 2219 CG9611-RE 1185..1942 780..22 3755 99.7 Minus
f-cup-RB 2470 CG9611-RB 1436..2193 780..22 3755 99.7 Minus
f-cup-RA 2558 CG9611-RA 1524..2281 780..22 3755 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13695961..13696150 311..500 950 100 Plus
3R 32079331 3R 13695706..13695892 125..311 935 100 Plus
3R 32079331 3R 13696203..13696348 500..645 730 100 Plus
3R 32079331 3R 13696827..13696962 644..780 620 98.5 Plus
3R 32079331 3R 13695540..13695642 22..124 515 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:32:45 has no hits.

BO03656.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:46:00 Download gff for BO03656.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9611-PA 1322..2082 19..780 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:51:10 Download gff for BO03656.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9611-PB 1193..1953 19..780 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:10:16 Download gff for BO03656.3prime
Subject Subject Range Query Range Percent Splice Strand
f-cup-RA 1524..2287 14..780 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:23:39 Download gff for BO03656.3prime
Subject Subject Range Query Range Percent Splice Strand
f-cup-RA 1524..2287 14..780 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:23:39 Download gff for BO03656.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13695706..13695891 125..310 100 <- Plus
3R 13695961..13696149 311..499 100 <- Plus
3R 13696203..13696346 500..643 100 <- Plus
3R 13696827..13696962 644..780 98   Plus
3R 13695534..13695642 14..124 97 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:10:16 Download gff for BO03656.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9521256..9521364 14..124 97 <- Plus
arm_3R 9521428..9521613 125..310 100 <- Plus
arm_3R 9521683..9521871 311..499 100 <- Plus
arm_3R 9521925..9522068 500..643 100 <- Plus
arm_3R 9522549..9522684 644..780 98   Plus

BO03656.5prime Sequence

794 bp (745 high quality bases) assembled on 2005-12-01

> BO03656.5prime
GAAGTTATCAGTCGACATGAGTGACAAAACCGGCCGAGGACGGAGTAACC
CCTCCACCAGCCGGATTCCTCGCAGCGCACAAAGTCCGCGCCAAGCCTCA
GTGGTCCACTCGCCCAGGACAAACTGTGCCTTTCGCCCGATTTTTCACGA
GAGGAGCACTCACGAGGACGACCAGGTGCTCACCCAAGAACTATGGAAGC
TGGCGCGTAAATCGGGCACCCTGAATCTTTCCAACAAAGCATTGGCCAGA
GTGCCCAAGCGACTGTACGACATTAACGAGGCGGATGCGGACAGCAAGGC
CGTAAATCTAGAGCAGCTAACGATTAAAGAGGAGGATGCCTGGTGGAACC
AAGTGCCATTGAACAACCTGGACCTGAGCTCAAACACCTTAACGCACATA
TCGCCAAAGATCGAGAATCTGCAATCACTTACCGTGCTTACGCTGCACGA
TAATGCTTTGGTGGAGTTACCACCGGAGATCGGCAAGCTGGAAAAGCTAG
TGCGCCTTAATGTGAGCCACAACAAACTCAGCCAGCTGCCGCGTGCGATG
TACAGTCTACCGGAGCTGCGGCACCTCAACATCTCGTACAACGAGTTCGT
CGAACTTAATCCGGACATCAGTGACCTTCACATGCTTGAGTTTTTGGACG
GTGGGCATAACAATATTCAATCCCTGCCCGGTGGCATTGGGTTCCTGGTG
CGTCTAACTGCGCTCTTGTTGCCCTATAATCACATCAAGGAACTGCCGCC
CGATCTTGTTAACATGCGCTCTTTGCAAAAGATTGATCTGATGC

BO03656.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG9611-PA 2082 CG9611-RA 126..907 13..794 3910 100 Plus
CG9611-PB 1953 CG9611-RB 1..778 17..794 3890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
f-cup-RH 2795 CG9611-RH 240..1021 13..794 3910 100 Plus
f-cup-RG 2797 CG9611-RG 240..1021 13..794 3910 100 Plus
f-cup-RF 2885 CG9611-RF 328..1109 13..794 3910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13699068..13699306 251..13 1195 100 Minus
3R 32079331 3R 13697834..13698039 647..442 1030 100 Minus
3R 32079331 3R 13698091..13698283 442..250 965 100 Minus
3R 32079331 3R 13697523..13697647 770..646 625 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:57:13 has no hits.

BO03656.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:46:01 Download gff for BO03656.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9611-PA 124..907 10..794 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:51:12 Download gff for BO03656.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9611-PA 124..907 10..794 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:35:44 Download gff for BO03656.5prime
Subject Subject Range Query Range Percent Splice Strand
f-cup-RF 326..1109 10..794 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:36:22 Download gff for BO03656.5prime
Subject Subject Range Query Range Percent Splice Strand
f-cup-RF 326..1109 10..794 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:36:22 Download gff for BO03656.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13697441..13697464 771..794 100 <- Minus
3R 13697523..13697646 647..770 100 <- Minus
3R 13697835..13698038 443..646 100 <- Minus
3R 13698091..13698281 252..442 100 <- Minus
3R 13699068..13699308 10..251 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:35:44 Download gff for BO03656.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9523163..9523186 771..794 100 <- Minus
arm_3R 9523245..9523368 647..770 100 <- Minus
arm_3R 9523557..9523760 443..646 100 <- Minus
arm_3R 9523813..9524003 252..442 100 <- Minus
arm_3R 9524790..9525030 10..251 99   Minus

BO03656.complete Sequence

1987 bp assembled on 2006-10-10

GenBank Submission: FJ629579

> BO03656.complete
GAAGTTATCAGTCGACATGAGTGACAAAACCGGCCGAGGACGGAGTAACC
CCTCCACCAGCCGGATTCCTCGCAGCGCACAAAGTCCGCGCCAAGCCTCA
GTGGTCCACTCGCCCAGGACAAACTGTGCCTTTCGCCCGATTTTTCACGA
GAGGAGCACTCACGAGGACGACCAGGTGCTCACCCAAGAACTATGGAAGC
TGGCGCGTAAATCGGGCACCCTGAATCTTTCCAACAAAGCATTGGCCAGA
GTGCCCAAGCGACTGTACGACATTAACGAGGCGGATGCGGACAGCAAGGC
CGTAAATCTAGAGCAGCTAACGATTAAAGAGGAGGATGCCTGGTGGAACC
AAGTGCCATTGAACAACCTGGACCTGAGCTCAAACACCTTAACGCACATA
TCGCCAAAGATCGAGAATCTGCAATCACTTACCGTGCTTACGCTGCACGA
TAATGCTTTGGTGGAGTTACCACCGGAGATCGGCAAGCTGGAAAAGCTAG
TGCGCCTTAATGTGAGCCACAACAAACTCAGCCAGCTGCCGCGTGCGATG
TACAGTCTACCGGAGCTGCGGCACCTCAACATCTCGTACAACGAGTTCGT
CGAACTTAATCCGGACATCAGTGACCTTCACATGCTTGAGTTTTTGGACG
GTGGGCATAACAATATTCAATCCCTGCCCGGTGGCATTGGGTTCCTGGTG
CGTCTAACTGCGCTCTTGTTGCCCTATAATCACATCAAGGAACTGCCGCC
CGATCTTGTTAACATGCGCTCTTTGCAAAAGATTGATCTGATGCATAATG
ATCTGACCAGCTTGCCGGAGGATATGGGCCTTTTGAGAAAGCTGGATTGC
CTTTATCTGCAGCATAACGACATACTGGAACTGCCCGAGTTCGAGGGAAA
CGAGGCCTTGAACGAGCTACATGCCAGCAATAATTTCATCAAGATCATAC
CAAAAGCTATGTGTAGTAACTTGCCACACCTGAAGATACTGGATTTGCGG
GACAATAAGATCACGGAGCTGCCCGACGAGCTGTGCCTGCTGCGCAATCT
AAACCGTCTCGATGTGTCCAATAATACGATCAGCGTGCTGCCAGTCACAT
TGTCCTCCTTGGCTCATCTGATTAGCCTGCAGGTGGAGGGAAATCCCATA
AAGACAATCAGACGCGACATCCTACAGTGTGGAACAACGAGGATCTTAAA
GACTCTGCACGATAGAGCTGTGGCGAAGGCCAAGGAGGAGGGAGGTGGCG
TCGACGACGCTTCCACGTCAGCGGGCATCAGTGTTACCCGTTTGCGTGGT
GGCCAAATGGACGATGGTGATATACCCGGAAACTTTCCGGATAGATACAA
ACTACGACATACACGTACATTAGCTGTCAATCTGGAGGAGCTCACGTCAG
TGCCTGACCAGGTGTTCCAGATCGCCAGGGATGAGGGTGTGCATGTGGTG
GACTTTGCGCGCAACCAGCTGAGCACTTTGCCCAATGGACTGCAGCACAT
GAAAGATTTAGTTACGGAACTAGTTTTATCCAACAATGTCATCGGCTATG
TGCCACAGTTCATCTCCCAGTTTACACGTATATCTTTCTTGAATTTGTCC
AACAATCTGTTGAATGACCTGCCCACGGAGTTTGGTGTCTTGAATACACT
GCGTGAACTAAACATTGCAAACAATCGCTTTCCGTGTATTCCCAACTGTG
TGTACGAGCTGCAAGGCCTGGAGATCCTCATTGCCAGTGAGAACCACATA
AAAATGTTAAATGTATCGGGTCTGCAGAACATGCGACGTTTGAGCACATT
GGATTTGCGCAATAACGACATCGAGACAGTGCCACCAATTTTGGGGAACC
TGACAAACATAACTCACTTGGAGCTGGTGGGCAATCCATTTCGACAGCCC
CGCCACCAAATCCTGATGAAGGGCACTGACGCCATCATGTCGTATTTGCG
CGATCGCATACCCACAAAGGCAAGCTTTCTAGACCAT

BO03656.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
f-cup-RA 2082 CG9611-PA 126..2079 13..1966 9770 100 Plus
f-cup-RB 1953 CG9611-PB 1..1950 17..1966 9750 100 Plus
f-cup-RE 1863 CG9611-PE 146..1860 252..1966 8575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
f-cup-RB 2470 CG9611-RB 240..2193 13..1966 9770 100 Plus
f-cup-RA 2558 CG9611-RA 328..2281 13..1966 9770 100 Plus
f-cup-RE 2219 CG9611-RE 228..1942 252..1966 8575 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13696827..13697229 1344..942 2015 100 Minus
3R 32079331 3R 13699068..13699306 251..13 1195 100 Minus
3R 32079331 3R 13697834..13698039 647..442 1030 100 Minus
3R 32079331 3R 13698091..13698283 442..250 965 100 Minus
3R 32079331 3R 13695961..13696150 1677..1488 950 100 Minus
3R 32079331 3R 13695706..13695892 1863..1677 935 100 Minus
3R 32079331 3R 13697292..13697464 943..771 865 100 Minus
3R 32079331 3R 13696203..13696348 1488..1343 730 100 Minus
3R 32079331 3R 13697523..13697647 770..646 625 100 Minus
3R 32079331 3R 13695540..13695642 1966..1864 515 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:05:03 has no hits.

BO03656.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:11 Download gff for BO03656.complete
Subject Subject Range Query Range Percent Splice Strand
CG9611-RA 124..2082 10..1969 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:35 Download gff for BO03656.complete
Subject Subject Range Query Range Percent Splice Strand
CG9611-RB 234..2195 10..1974 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:46 Download gff for BO03656.complete
Subject Subject Range Query Range Percent Splice Strand
f-cup-RA 332..2284 17..1971 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:11 Download gff for BO03656.complete
Subject Subject Range Query Range Percent Splice Strand
CG9611-RB 234..2195 10..1974 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:02 Download gff for BO03656.complete
Subject Subject Range Query Range Percent Splice Strand
f-cup-RA 332..2284 17..1971 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:02 Download gff for BO03656.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13699068..13699302 17..251 100   Minus
3R 13695535..13695642 1864..1971 97 <- Minus
3R 13695706..13695891 1678..1863 100 <- Minus
3R 13695961..13696149 1489..1677 100 <- Minus
3R 13696203..13696346 1345..1488 100 <- Minus
3R 13696827..13697227 944..1344 100 <- Minus
3R 13697292..13697464 771..943 100 <- Minus
3R 13697523..13697646 647..770 100 <- Minus
3R 13697835..13698038 443..646 100 <- Minus
3R 13698091..13698281 252..442 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:46 Download gff for BO03656.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9523245..9523368 647..770 100 <- Minus
arm_3R 9523557..9523760 443..646 100 <- Minus
arm_3R 9522549..9522949 944..1344 100 <- Minus
arm_3R 9523813..9524003 252..442 100 <- Minus
arm_3R 9524790..9525024 17..251 100   Minus
arm_3R 9521257..9521364 1864..1971 97 <- Minus
arm_3R 9521428..9521613 1678..1863 100 <- Minus
arm_3R 9521683..9521871 1489..1677 100 <- Minus
arm_3R 9521925..9522068 1345..1488 100 <- Minus
arm_3R 9523014..9523186 771..943 100 <- Minus

BO03656.pep Sequence

Translation from 16 to 1987

> BO03656.pep
MSDKTGRGRSNPSTSRIPRSAQSPRQASVVHSPRTNCAFRPIFHERSTHE
DDQVLTQELWKLARKSGTLNLSNKALARVPKRLYDINEADADSKAVNLEQ
LTIKEEDAWWNQVPLNNLDLSSNTLTHISPKIENLQSLTVLTLHDNALVE
LPPEIGKLEKLVRLNVSHNKLSQLPRAMYSLPELRHLNISYNEFVELNPD
ISDLHMLEFLDGGHNNIQSLPGGIGFLVRLTALLLPYNHIKELPPDLVNM
RSLQKIDLMHNDLTSLPEDMGLLRKLDCLYLQHNDILELPEFEGNEALNE
LHASNNFIKIIPKAMCSNLPHLKILDLRDNKITELPDELCLLRNLNRLDV
SNNTISVLPVTLSSLAHLISLQVEGNPIKTIRRDILQCGTTRILKTLHDR
AVAKAKEEGGGVDDASTSAGISVTRLRGGQMDDGDIPGNFPDRYKLRHTR
TLAVNLEELTSVPDQVFQIARDEGVHVVDFARNQLSTLPNGLQHMKDLVT
ELVLSNNVIGYVPQFISQFTRISFLNLSNNLLNDLPTEFGVLNTLRELNI
ANNRFPCIPNCVYELQGLEILIASENHIKMLNVSGLQNMRRLSTLDLRNN
DIETVPPILGNLTNITHLELVGNPFRQPRHQILMKGTDAIMSYLRDRIPT
KASFLDH

BO03656.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
f-cup-PB 650 CG9611-PB 1..650 1..650 3344 100 Plus
f-cup-PA 693 CG9611-PA 44..693 1..650 3344 100 Plus
f-cup-PE 620 CG9611-PE 49..620 79..650 2938 99.8 Plus
f-cup-PG 759 CG9611-PG 1..639 1..623 2300 75.3 Plus
f-cup-PF 802 CG9611-PF 44..682 1..623 2300 75.3 Plus
f-cup-PG 759 CG9611-PG 553..759 444..650 1061 100 Plus
f-cup-PB 650 CG9611-PB 49..405 260..652 210 25.9 Plus
f-cup-PA 693 CG9611-PA 92..448 260..652 210 25.9 Plus
f-cup-PG 759 CG9611-PG 49..405 260..652 210 25.9 Plus
f-cup-PE 620 CG9611-PE 85..375 322..652 201 26.2 Plus
f-cup-PG 759 CG9611-PG 549..756 175..400 187 28.6 Plus