Clone Sequence Records
BO03657.3prime Sequence
654 bp (540 high quality bases) assembled on 2005-12-01
> BO03657.3prime
ATGGTCTAGAAAGCTTGCCTTGGCCGCCTGCACCGACTGCTTCTGCGAGG
AGCTGATCTTGTCGCCCAGACTCAAGGCCATGCCCTGACTCTTGGCGCGA
ATGCGTATGTGTCCCGTCACCTTCGAATCGGGATCATCGACGGGCTTCTC
GATACTCAGATTGGCCAAGGCATTCTCTCCGAAAATGGACTTGGCGTACA
TGTTGGCGGCCATGAAGCCGCACTGGCCGGACAGCGCCTTCTCCGGCGTG
AGGCACTTCATGTTGGTGCTCTTCAGCAGGTGCTTGAGATATTCGTGCAG
GTCGGTGAAGCTGGTGTTGACGGTGACCTTGTTCTCCCACTCGAAGTCCT
GCCACATTTGACGGAACTCGGTGTCCGTGCAGCTGGCCGGAATTATGTAG
TCCATGATGTCGATGTGAATGGTATTGAGGACCACCACATTCGTGTTCAG
GGCGGTTTCGTAAACAATATTGCCGAAGATGATGCCGTTCTCTGTGGAGG
AGACCTTTACGTTGGCCTTGATATTGCAGAAGTCGTGCGGAGCAGGGACC
ACTGGATGCGGGCGCTCCACCAGCTTAAGATCGCCCAATGTGGCCAACTC
CAGTGTGCAGTTCTGTAGCGTGTCGTTGGTCTGGTTGACGATCAGCACGT
CCAG
BO03657.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6223-PA | 2895 | betaCop-RA | 2260..2892 | 654..22 | 3115 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:37:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaCOP-RA | 3203 | CG6223-RA | 2409..3041 | 654..22 | 3135 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:37:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18382038..18382314 | 189..465 | 1385 | 100 | Plus |
| X | 23542271 | X | 18382382..18382543 | 465..626 | 780 | 98.8 | Plus |
| X | 23542271 | X | 18381863..18381969 | 84..190 | 535 | 100 | Plus |
| X | 23542271 | X | 18381711..18381776 | 22..87 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:37:05 has no hits.
BO03657.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:46:02 Download gff for
BO03657.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6223-PA | 2260..2895 | 19..654 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:51:13 Download gff for
BO03657.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6223-PA | 2260..2895 | 19..654 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:33:46 Download gff for
BO03657.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaCop-RA | 2362..2997 | 19..654 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:13:41 Download gff for
BO03657.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaCOP-RA | 2409..3044 | 19..654 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:13:41 Download gff for
BO03657.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18381864..18381969 | 85..190 | 100 | <- | Plus |
| X | 18382040..18382313 | 191..464 | 100 | <- | Plus |
| X | 18382382..18382543 | 465..626 | 98 | <- | Plus |
| X | 18382603..18382630 | 627..654 | 100 | | Plus |
| X | 18381708..18381773 | 19..84 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:33:46 Download gff for
BO03657.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18275741..18275806 | 19..84 | 98 | <- | Plus |
| arm_X | 18275897..18276002 | 85..190 | 100 | <- | Plus |
| arm_X | 18276073..18276346 | 191..464 | 100 | <- | Plus |
| arm_X | 18276415..18276576 | 465..626 | 98 | <- | Plus |
| arm_X | 18276636..18276663 | 627..654 | 100 | | Plus |
BO03657.5prime Sequence
825 bp (718 high quality bases) assembled on 2005-12-01
> BO03657.5prime
GAAGTTATCAGTCGACATGACGTCGCAAGTGCCGTGCTACACGATAATCA
ACTCGCCGGACCTGGAGGTGACCAACGAGATGCAACTGAAGCGCGATCTC
GAAAAGGGCGACACGAACGTGAAGATCGAGACGCTGAAGCGGGTAATCAA
GTTGCTGCTGAATGGGGAGCGGTATCCGGGCCTGATCATGACCATCATAC
GCTTCGTCCTGCCGGTGCAGAACCACACGATCAAGAAGCTGCTGCTCATC
TTCTGGGAAATTGTGCCGAAGACATCGGCGGATGGGAAGCTGCTGCAGGA
GATGATACTGGTGTGCGATGCGTACAGGAAGGATTTGCAGCATCCCAATG
AGTTTCTGCGCGGCTCGACACTGCGCTTCCTCTGCAAGCTGAAGGAGCCG
GAGCTGCTGGAGCCACTGATGCCGGCCATACGGGCGTGCCTGGATCACCG
GCACTCGTATGTGCGACGAAATGCCGTGCTGGCCATCTTTACCATCTACA
AGAACTTCGATTGGCTGGTGCCCGATGGGCCGGAGCTGATTGCCAGCTTC
CTGGACACGCAGCAGGACATGAGCTGCAAGCGCAACGCCTTCCTTATGCT
ACTGCATGCGGACCAGGAGCGAGCGCTCAACTATCTGGCCAGTTGCATCG
ATCAGGTGCACACTTTCGGCGATATACTGCAGCTGGTCATCGTGGAGCTG
ATCTATAAGGTGTGCCATGCCAATCCCGCCGAGCGTTCGCGGTTCATACG
CTGCATCTACAACCTGCTGAACTCCAGCTCGAATGCGGTGCGTTACGAGT
CCGCTGGGACATTGATAACGCTCTC
BO03657.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6223-PA | 2895 | betaCop-RA | 1..809 | 17..825 | 3995 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:24:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaCOP-RA | 3203 | CG6223-RA | 150..958 | 17..825 | 4015 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:24:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18384285..18385093 | 825..17 | 4015 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:24:21 has no hits.
BO03657.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:46:03 Download gff for
BO03657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6223-PA | 1..809 | 17..825 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:51:14 Download gff for
BO03657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6223-PA | 1..809 | 17..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:26:40 Download gff for
BO03657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaCop-RA | 95..911 | 9..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:48:57 Download gff for
BO03657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaCOP-RA | 142..958 | 9..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:48:57 Download gff for
BO03657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18384285..18385101 | 9..825 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:26:40 Download gff for
BO03657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18278318..18279134 | 9..825 | 99 | | Minus |
BO03657.complete Sequence
2929 bp assembled on 2006-10-10
GenBank Submission: FJ629580
> BO03657.complete
GAAGTTATCAGTCGACATGACGTCGCAAGTGCCGTGCTACACGATAATCA
ACTCGCCGGACCTGGAGGTGACCAACGAGATGCAACTGAAGCGCGATCTC
GAAAAGGGCGACACGAACGTGAAGATCGAGACGCTGAAGCGGGTAATCAA
GTTGCTGCTGAATGGGGAGCGGTATCCGGGCCTGATCATGACCATCATAC
GCTTCGTCCTGCCGGTGCAGAACCACACGATCAAGAAGCTGCTGCTCATC
TTCTGGGAAATTGTGCCGAAGACATCGGCGGATGGGAAGCTGCTGCAGGA
GATGATACTGGTGTGCGATGCGTACAGGAAGGATTTGCAGCATCCCAATG
AGTTTCTGCGCGGCTCGACACTGCGCTTCCTCTGCAAGCTGAAGGAGCCG
GAGCTGCTGGAGCCACTGATGCCGGCCATACGGGCGTGCCTGGATCACCG
GCACTCGTATGTGCGACGAAATGCCGTGCTGGCCATCTTTACCATCTACA
AGAACTTCGATTGGCTGGTGCCCGATGGGCCGGAGCTGATTGCCAGCTTC
CTGGACACGCAGCAGGACATGAGCTGCAAGCGCAACGCCTTCCTTATGCT
ACTGCATGCGGACCAGGAGCGAGCGCTCAACTATCTGGCCAGTTGCATCG
ATCAGGTGCACACTTTCGGCGATATACTGCAGCTGGTCATCGTGGAGCTG
ATCTATAAGGTGTGCCATGCCAATCCCGCCGAGCGTTCGCGGTTCATACG
CTGCATCTACAACCTGCTGAACTCCAGCTCGAATGCGGTGCGTTACGAGT
CCGCTGGCACATTGATTACGCTCTCGCTGGCGCCCACGGCCATCAAGGCG
GCGGCCAGTTGCTACATCGAACTGGTGGTCAAGGAGAGCGACAACAACGT
CAAGCTAATCGTGCTCGATCGCCTGGTGGCCATGAAGGAGCACGAGGGCA
TGGAGAAGGTGATGCAGGATCTGGTGATGGACGTTCTGCGCGTCCTGGCC
GCACCAGACATCGAGGTGCGCAGGAAAACACTCGCGCTGGCCCTGGACTT
GGTCTATTCGCGTAATATTGGCGAAATGGTGCTGGTCCTCAAGAAGGAGG
TGGCCAAGACGCACAATGTGGAGCACGAGGACACTGGCAAGTACAGGCAG
CTGCTCGTCCGCACCCTGCACACCTGCTCCATCAAGTTTCCCGATGTGGC
CGCCAATGTTATACCCGTACTGGTTGAATTCCTCTCGGATACCAACGAAC
TTGCCGCCGCCGATGTGCTTATCTTCATACGCGAAGCCATCCAAAAGTTC
CCCGCCCTGCGCGCCCTCATCATTGAGCATTTAATTGAGGCCTTCCCGCA
GATTAAGTCCTCCAAAATTCATCGCGCCGCCGTTTGGATTTTGGGTGAAT
ACGTGGAGGGCTCGCAAATCCTGGAGGTGATTGCCGTCATTCAGCAGACG
CTGGGCGAAGTGCCCATGGTGGAGGCGGAGCAGCGTCGCTTGGCCGGCGA
CCAGACCGAGGAGCAGAAGCAGCAGCAGGGATCCGCAGGCGGCAATGCAG
CTGGATCCGCCGCAGAGGGCTCTGGCTCCGGAAACGCCAGCAACAAGGTC
ACCTCCGATGGAACCTATGCCACCCAGAGTGCCTACAGTCTGGCCCCGGT
GGCCAAGGCGGAGAAACGTCCGCCATTGCGTCAGTACTTGATGGACGGCG
ACTTCTTCATCGGCGCCGCTCTATCCGCCACGTTGACCAAGCTGGCACTG
CGCTACGCAGAGCTGGAGACGGAGGCGCGTGCCCAGAATCGTCTGACCAC
GCAGGTAATGCTGATCATGAGCTCGATACTGCACCTGGGCAAGTCCGGTT
TCCCTAGCAAGCCCATAACCAACGATGACACCGATCGCATCTTCGTCTGC
CTGCGCACGCTGAGCGAACGCACGCCGGAGGCTATCTCCGTCTTCACACT
GTACTGCCGCGAGGCTCTGGGCAAGATGCTGGATGCGCAGCACGACGAGG
ACCAGCGCATGTTGAAGGAGAAGCAGAAGGCCACCGCCAAGGTGCAGCCG
GACGATCCGGTGCTCTTTGCACAGCTCTCGAACGGACGTGACAATCAGCT
GGGCGAGAATGTGTTCGAATCCAGTCTGAACCAGGCGTTGGCCGGCAGCA
AGAACGCCCAGCTGAGCGACGTGGCCTCGCCGAACAGCAAGCTCAACAAG
GTCACCCAACTGACTGGCTTCTCGGATCCCGTCTATGCGGAGGCCTACGT
CAATGTCAATCAGTACGATATTGTCCTGGACGTGCTGATCGTCAACCAGA
CCAACGACACGCTACAGAACTGCACACTGGAGTTGGCCACATTGGGCGAT
CTTAAGCTGGTGGAGCGCCCGCATCCAGTGGTCCTGGCTCCGCACGACTT
CTGCAATATCAAGGCCAACGTAAAGGTCTCCTCCACAGAGAACGGCATCA
TCTTCGGCAATATTGTTTACGAAACCGCCCTGAACACGAATGTGGTGGTC
CTCAATACCATTCACATCGACATCATGGACTACATAATTCCGGCCAGCTG
CACGGACACCGAGTTCCGTCAAATGTGGCAGGACTTCGAGTGGGAGAACA
AGGTCACCGTCAACACCAGCTTCACCGACCTGCACGAATATCTCAAGCAC
CTGCTGAAGAGCACCAACATGAAGTGCCTCACGCCGGAGAAGGCGCTGTC
CGGCCAGTGCGGCTTCATGGCCGCCAACATGTACGCCAAGTCCATTTTCG
GAGAGAATGCCTTGGCCAATCTGAGTATCGAGAAGCCCGTCGATGATCCC
GATTCGAAGGTGACGGGACACATACGCATTCGCGCCAAGAGTCAGGGCAT
GGCCTTGAGTCTGGGCGACAAGATCAGCTCCTCGCAGAAGCAGTCGGTGC
AGGCGGCCAAGGCAAGCTTTCTAGACCAT
BO03657.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:00:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaCOP-RA | 2895 | CG6223-PA | 1..2892 | 17..2908 | 14460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaCOP-RA | 3203 | CG6223-RA | 150..3041 | 17..2908 | 14460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18383462..18385093 | 1648..17 | 8160 | 100 | Minus |
| X | 23542271 | X | 18382603..18383258 | 2303..1648 | 3280 | 100 | Minus |
| X | 23542271 | X | 18382038..18382314 | 2741..2465 | 1385 | 100 | Minus |
| X | 23542271 | X | 18382382..18382543 | 2465..2304 | 810 | 100 | Minus |
| X | 23542271 | X | 18381863..18381969 | 2846..2740 | 535 | 100 | Minus |
| X | 23542271 | X | 18381711..18381776 | 2908..2843 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:00:35 has no hits.
BO03657.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:02 Download gff for
BO03657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaCop-RA | 1..2895 | 17..2911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:06:17 Download gff for
BO03657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaCop-RA | 95..2997 | 9..2911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:41:55 Download gff for
BO03657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaCop-RA | 103..2997 | 17..2913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:02 Download gff for
BO03657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaCop-RA | 95..2997 | 9..2911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:13 Download gff for
BO03657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaCOP-RA | 150..3044 | 17..2913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:13 Download gff for
BO03657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18381705..18381773 | 2846..2913 | 95 | <- | Minus |
| X | 18381864..18381969 | 2740..2845 | 100 | <- | Minus |
| X | 18382040..18382313 | 2466..2739 | 100 | <- | Minus |
| X | 18382382..18382543 | 2304..2465 | 100 | <- | Minus |
| X | 18382603..18383258 | 1648..2303 | 100 | <- | Minus |
| X | 18383463..18385093 | 17..1647 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:41:55 Download gff for
BO03657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18276636..18277291 | 1648..2303 | 100 | <- | Minus |
| arm_X | 18275738..18275806 | 2846..2913 | 95 | <- | Minus |
| arm_X | 18275897..18276002 | 2740..2845 | 100 | <- | Minus |
| arm_X | 18276073..18276346 | 2466..2739 | 100 | <- | Minus |
| arm_X | 18276415..18276576 | 2304..2465 | 100 | <- | Minus |
| arm_X | 18277496..18279126 | 17..1647 | 100 | | Minus |
BO03657.pep Sequence
Translation from 16 to 2929
> BO03657.pep
MTSQVPCYTIINSPDLEVTNEMQLKRDLEKGDTNVKIETLKRVIKLLLNG
ERYPGLIMTIIRFVLPVQNHTIKKLLLIFWEIVPKTSADGKLLQEMILVC
DAYRKDLQHPNEFLRGSTLRFLCKLKEPELLEPLMPAIRACLDHRHSYVR
RNAVLAIFTIYKNFDWLVPDGPELIASFLDTQQDMSCKRNAFLMLLHADQ
ERALNYLASCIDQVHTFGDILQLVIVELIYKVCHANPAERSRFIRCIYNL
LNSSSNAVRYESAGTLITLSLAPTAIKAAASCYIELVVKESDNNVKLIVL
DRLVAMKEHEGMEKVMQDLVMDVLRVLAAPDIEVRRKTLALALDLVYSRN
IGEMVLVLKKEVAKTHNVEHEDTGKYRQLLVRTLHTCSIKFPDVAANVIP
VLVEFLSDTNELAAADVLIFIREAIQKFPALRALIIEHLIEAFPQIKSSK
IHRAAVWILGEYVEGSQILEVIAVIQQTLGEVPMVEAEQRRLAGDQTEEQ
KQQQGSAGGNAAGSAAEGSGSGNASNKVTSDGTYATQSAYSLAPVAKAEK
RPPLRQYLMDGDFFIGAALSATLTKLALRYAELETEARAQNRLTTQVMLI
MSSILHLGKSGFPSKPITNDDTDRIFVCLRTLSERTPEAISVFTLYCREA
LGKMLDAQHDEDQRMLKEKQKATAKVQPDDPVLFAQLSNGRDNQLGENVF
ESSLNQALAGSKNAQLSDVASPNSKLNKVTQLTGFSDPVYAEAYVNVNQY
DIVLDVLIVNQTNDTLQNCTLELATLGDLKLVERPHPVVLAPHDFCNIKA
NVKVSSTENGIIFGNIVYETALNTNVVVLNTIHIDIMDYIIPASCTDTEF
RQMWQDFEWENKVTVNTSFTDLHEYLKHLLKSTNMKCLTPEKALSGQCGF
MAANMYAKSIFGENALANLSIEKPVDDPDSKVTGHIRIRAKSQGMALSLG
DKISSSQKQSVQAAKASFLDH
BO03657.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaCOP-PA | 964 | CG6223-PA | 1..964 | 1..964 | 4881 | 100 | Plus |
| AP-1-2beta-PA | 921 | CG12532-PA | 17..458 | 23..464 | 204 | 21.2 | Plus |
