Clone BO03662 Report

Search the DGRC for BO03662

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:36
Well:62
Vector:pDNR-Dual
Associated Gene/Transcriptcsw-RA
Protein status:BO03662.pep: validated full length
Sequenced Size:2560

Clone Sequence Records

BO03662.3prime Sequence

651 bp (551 high quality bases) assembled on 2005-12-01

> BO03662.3prime
ATGGTCTAGAAAGCTTGCTCTTGTTTTGCGCGGCGGTGTCGGTGGCGGCG
GCAACGCAGGCGCATGGCTTGGCGGTCGCAAGCCGATCATGTCTTTGGGA
ATGTTTTTGAATTTTGCTGCTCCCGCCGGAGCCTGCTCCTCGCGCTGCTG
TTGCTGCTTCAGCGAGTCGCTGTAAAAGTTCGACTTGCGCATATTGCCGC
CCAGCCCCAAGCCGATGCCGCCCAGTAGGGCGTTGATGTTACCGTTGCTG
CTGCCGTTGCTGCTGCTGGTGGTGCTGCTCCCGCCGCCGTTGCTGCAGCC
GCTATTGCCAATGCCGTTGTTATTATTGTTGCAGTTGACCACCGGCAACG
GCGGCTGCTGCTTCGATGCGTGCTTGTTGCCGACGCCCATGCCCACGCCC
ATGCTTAGGCCCATCCCAGTGCCCAAATCCGCCGATGTCGGCGTCAGTGG
CGTCTTACTCGGAACTAAACTTATGCTAGAAATTGCTGGTGGTAATGGAG
ATCTTTGTGAATCGTTTCCAATTTCGCCCGTGTACTTTTATATTGGTGTA
CTCGCGGCCAACCTGCAGGCTCTGCTCCTCAGCTCGTTTCCGGGCGATCA
GGGTCTGTATATAGTGCTGCACCGCATAGTAGACGAACTTGTATTGCGCC
C

BO03662.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3954-PA 2526 csw-RA 2007..2523 538..22 2585 100 Minus
CG3954-PC 2049 csw-RC 1530..2046 538..22 2585 100 Minus
CG3954-PB 2838 csw-RB 2307..2728 538..117 2110 100 Minus
CG3954-PA 2526 csw-RA 1896..2009 650..537 570 100 Minus
CG3954-PC 2049 csw-RC 1419..1532 650..537 570 100 Minus
CG3954-PB 2838 csw-RB 2196..2309 650..537 570 100 Minus
CG3954-PB 2838 csw-RB 2806..2838 119..87 165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
csw-RD 7119 CG3954-RD 2589..3216 650..22 3120 99.8 Minus
csw-RC 4106 CG3954-RC 1613..2240 650..22 3120 99.8 Minus
csw-RA 4560 CG3954-RA 2067..2694 650..22 3120 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2111205..2111623 535..117 2095 100 Minus
X 23542271 X 2111026..2111139 650..537 570 100 Minus
X 23542271 X 2111701..2111798 119..22 490 100 Minus
Blast to na_te.dros performed 2015-02-13 15:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3252..3382 363..233 123 56.8 Minus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3242..3387 386..233 118 58.4 Minus

BO03662.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:46:08 Download gff for BO03662.3prime
Subject Subject Range Query Range Percent Splice Strand
csw-PC 1417..2049 19..651 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:51:21 Download gff for BO03662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3954-PC 1417..2049 19..651 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 10:59:38 Download gff for BO03662.3prime
Subject Subject Range Query Range Percent Splice Strand
csw-RA 2065..2700 15..651 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:41:48 Download gff for BO03662.3prime
Subject Subject Range Query Range Percent Splice Strand
csw-RA 2065..2700 15..651 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:41:48 Download gff for BO03662.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2111024..2111139 536..651 98 -> Minus
X 2111205..2111623 117..535 100 -> Minus
X 2111704..2111804 15..116 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 10:59:38 Download gff for BO03662.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2005057..2005172 536..651 98 -> Minus
arm_X 2005238..2005656 117..535 100 -> Minus
arm_X 2005737..2005837 15..116 98   Minus

BO03662.5prime Sequence

767 bp (730 high quality bases) assembled on 2005-12-01

> BO03662.5prime
GAAGTTATCAGTCGACATGTCATCGCGAAGATGGTTCCACCCAACGATAT
CTGGCATCGAAGCTGAGAAACTGCTGCAGGAGCAGGGATTCGACGGCTCC
TTCCTCGCCCGCCTCTCCTCCTCGAATCCGGGCGCCTTCACGCTCTCCGT
GCGCCGCGGCAACGAGGTGACCCACATCAAAATCCAAAACAATGGCGACT
TCTTTGATCTCTACGGTGGTGAAAAGTTCGCCACACTGCCGGAACTGGTA
CAATACTACATGGAGAATGGCGAGCTAAAGGAGAAGAACGGCCAGGCCAT
CGAACTCAAGCAGCCGCTGATCTGCGCCGAGCCCACCACGGAAAGATGGT
TTCATGGCAATCTTTCCGGAAAGGAAGCGGAAAAATTGATCCTGGAGCGG
GGCAAGAATGGTTCGTTTCTCGTCCGTGAATCTCAGAGCAAGCCTGGCGA
CTTCGTCCTTTCCGTGCGCACGGACGACAAAGTAACGCATGTCATGATTC
GATGGCAGGACAAGAAGTACGACGTCGGCGGCGGGGAATCCTTTGGCACC
TTGTCGGAACTGATCGATCACTACAAGCGTAATCCCATGGTGGAGACGTG
CGGAACCGTGGTGCATCTGCGACAGCCATTCAACGCCACACGAATCACGG
CGGCCGGCATCAATGCCCGGGTGGAACAGCTGGTCAAGGGAGGTTTCTGG
GAGGAATTCGAATCGCTGCAACAGGACAGTCGGGACACATTCTCGCGCAA
CGAGGGCTACAAACAGG

BO03662.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3954-PA 2526 csw-RA 1..751 17..767 3755 100 Plus
CG3954-PB 2838 csw-RB 630..1051 346..767 2110 100 Plus
CG3954-PC 2049 csw-RC 1..274 494..767 1370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
csw-RA 4560 CG3954-RA 172..922 17..767 3755 100 Plus
csw-RD 7119 CG3954-RD 707..1444 30..767 3690 100 Plus
csw-RC 4106 CG3954-RC 46..468 345..767 2115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2095008..2095199 29..220 960 100 Plus
X 23542271 X 2109227..2109415 501..689 930 99.5 Plus
X 23542271 X 2108378..2108543 344..509 830 100 Plus
X 23542271 X 2095269..2095396 218..345 640 100 Plus
X 23542271 X 2109481..2109561 687..767 405 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:19:54 has no hits.

BO03662.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:46:08 Download gff for BO03662.5prime
Subject Subject Range Query Range Percent Splice Strand
csw-PA 1..751 17..767 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:51:23 Download gff for BO03662.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3954-PA 1..751 17..767 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:49:45 Download gff for BO03662.5prime
Subject Subject Range Query Range Percent Splice Strand
csw-RA 167..922 10..767 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:36:18 Download gff for BO03662.5prime
Subject Subject Range Query Range Percent Splice Strand
csw-RA 167..922 10..767 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:36:18 Download gff for BO03662.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2109235..2109414 509..688 100 -> Plus
X 2109483..2109561 689..767 100   Plus
X 2095010..2095197 31..218 100 -> Plus
X 2095270..2095396 219..345 100 -> Plus
X 2108380..2108542 346..508 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:49:45 Download gff for BO03662.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1989043..1989230 31..218 100 -> Plus
arm_X 1989303..1989429 219..345 100 -> Plus
arm_X 2002413..2002575 346..508 100 -> Plus
arm_X 2003268..2003447 509..688 100 -> Plus
arm_X 2003516..2003594 689..767 100   Plus

BO03662.complete Sequence

2560 bp assembled on 2006-10-10

GenBank Submission: FJ629581

> BO03662.complete
GAAGTTATCAGTCGACATGTCATCGCGAAGATGGTTCCACCCAACGATAT
CTGGCATCGAAGCTGAGAAACTGCTGCAGGAGCAGGGATTCGACGGCTCC
TTCCTCGCCCGCCTCTCCTCCTCGAATCCGGGCGCCTTCACGCTCTCCGT
GCGCCGCGGCAACGAGGTGACCCACATCAAAATCCAAAACAATGGCGACT
TCTTTGATCTCTACGGTGGTGAAAAGTTCGCCACACTGCCGGAACTGGTA
CAATACTACATGGAGAATGGCGAGCTAAAGGAGAAGAACGGCCAGGCCAT
CGAACTCAAGCAGCCGCTGATCTGCGCCGAGCCCACCACGGAAAGATGGT
TTCATGGCAATCTTTCCGGAAAGGAAGCGGAAAAATTGATCCTGGAGCGG
GGCAAGAATGGTTCGTTTCTCGTCCGTGAATCTCAGAGCAAGCCTGGCGA
CTTCGTCCTTTCCGTGCGCACGGACGACAAAGTAACGCATGTCATGATTC
GATGGCAGGACAAGAAGTACGACGTCGGCGGCGGGGAATCCTTTGGCACC
TTGTCGGAACTGATCGATCACTACAAGCGTAATCCCATGGTGGAGACGTG
CGGAACCGTGGTGCATCTGCGACAGCCATTCAACGCCACACGAATCACGG
CGGCCGGCATCAATGCCCGGGTGGAACAGCTGGTCAAGGGAGGTTTCTGG
GAGGAATTCGAATCGCTGCAACAGGACAGTCGGGACACATTCTCGCGCAA
CGAGGGCTACAAACAGGAGAACCGCCTCAAGAATCGCTACCGCAACATAT
TGCCATACGACCACACGCGCGTCAAGCTGCTGGACGTGGAGCATAGCGTG
GCCGGAGCCGAGTACATCAATGCCAACTACATACGGCTGCCCACCGACGG
CGACCTGTACAACATGAGCAGCTCGTCGGAGAGCCTGAACAGCTCGGTGC
CCTCGTGCCCCGCCTGCACGGCTGCCCAGACACAGCGGAACTGCTCCAAC
TGCCAGCTGCAAAACAAGACGTGCGTGCAGTGCGCCGTGAAGAGCGCCAT
TCTGCCGTATAGCAACTGTGCCACCTGCAGCCGCAAGTCAGACTCCCTGA
GCAAGCACAAGCGGAGCGAATCCTCGGCCTCTTCATCGCCCTCCTCCGGC
TCTGGGTCCGGACCAGGATCGTCGGGCACCAGCGGAGTGAGCAGCGTCAA
TGGACCCGGCACACCCACCAATCTCACGAGCGGCACAGCCGGATGTCTGG
TCGGCCTGCTGAAGAGACACTCGAACGACTCGTCCGGAGCTGTTTCTATA
TCGATGGCCGAACGGGAACGCGAGAGGGAGCGCGAGATGTTTAAGACCTA
CATCGCCACCCAGGGCTGTCTGCTCACCCAGCAAGTGAACACGGTGACGG
ACTTCTGGAACATGGTCTGGCAGGAGAACACGCGGGTGATCGTCATGACC
ACCAAGGAGTACGAGCGCGGCAAAGAAAAGTGCGCCCGCTACTGGCCGGA
CGAGGGTAGATCGGAGCAGTTCGGCCACGCGCGGATACAGTGCGTCTCGG
AGAACTCGACCAGTGACTATACGCTGCGCGAGTTCCTCGTCTCGTGGCGG
GATCAGCCGGCGCGCCGGATCTTTCACTACCATTTCCAGGTGTGGCCGGA
TCACGGAGTGCCCGCCGATCCGGGCTGTGTGCTCAACTTCCTGCAAGATG
TCAACACGCGTCAGAGTCACCTGGCTCAAGCGGGCGAGAAGCCGGGTCCG
ATCTGCGTGCACTGCTCTGCGGGCATCGGTCGCACTGGCACCTTTATTGT
GATCGATATGATTCTCGATCAGATTGTGCGCAATGGATTGGATACTGAAA
TCGACATCCAGCGCACCATTCAGATGGTCCGATCGCAGCGTTCCGGTCTT
GTGCAAACCGAGGCGCAATACAAGTTCGTCTACTATGCGGTGCAGCACTA
TATACAGACCCTGATCGCCCGGAAACGAGCTGAGGAGCAGAGCCTGCAGG
TTGGCCGCGAGTACACCAATATAAAGTACACGGGCGAAATTGGAAACGAT
TCACAAAGATCTCCATTACCACCAGCAATTTCTAGCATAAGTTTAGTTCC
GAGTAAGACGCCACTGACGCCGACATCGGCGGATTTGGGCACTGGGATGG
GCCTAAGCATGGGCGTGGGCATGGGCGTCGGCAACAAGCACGCATCGAAG
CAGCAGCCGCCGTTGCCGGTGGTCAACTGCAACAATAATAACAACGGCAT
TGGCAATAGCGGCTGCAGCAACGGCGGCGGGAGCAGCACCACCAGCAGCA
GCAACGGCAGCAGCAACGGTAACATCAACGCCCTACTGGGCGGCATCGGC
TTGGGGCTGGGCGGCAATATGCGCAAGTCGAACTTTTACAGCGACTCGCT
GAAGCAGCAACAGCAGCGCGAGGAGCAGGCTCCGGCGGGAGCAGCAAAAT
TCAAAAACATTCCCAAAGACATGATCGGCTTGCGACCGCCAAGCCATGCG
CCTGCGTTGCCGCCGCCACCGACACCGCCGCGCAAAACAAGAGCAAGCTT
TCTAGACCAT

BO03662.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
csw-RA 2526 CG3954-PA 1..2523 17..2539 12615 100 Plus
csw-RD 2685 CG3954-PD 173..2682 30..2539 12550 100 Plus
csw-RB 2838 CG3954-PB 630..2728 346..2444 10495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
csw-RA 4560 CG3954-RA 172..2694 17..2539 12615 100 Plus
csw-RD 7119 CG3954-RD 707..3216 30..2539 12550 100 Plus
csw-RC 4106 CG3954-RC 46..2240 345..2539 10975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2109725..2110667 803..1745 4700 99.9 Plus
X 23542271 X 2111205..2111623 2026..2444 2095 100 Plus
X 23542271 X 2110949..2111141 1835..2027 965 100 Plus
X 23542271 X 2095008..2095199 29..220 960 100 Plus
X 23542271 X 2109227..2109415 501..689 930 99.5 Plus
X 23542271 X 2108378..2108543 344..509 830 100 Plus
X 23542271 X 2095269..2095396 218..345 640 100 Plus
X 23542271 X 2109481..2109600 687..806 600 100 Plus
X 23542271 X 2111701..2111798 2442..2539 490 100 Plus
X 23542271 X 2110744..2110836 1744..1836 465 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:28:16 has no hits.

BO03662.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:03 Download gff for BO03662.complete
Subject Subject Range Query Range Percent Splice Strand
csw-RA 1..2526 17..2542 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:52:47 Download gff for BO03662.complete
Subject Subject Range Query Range Percent Splice Strand
csw-RA 170..2696 17..2544 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:55 Download gff for BO03662.complete
Subject Subject Range Query Range Percent Splice Strand
csw-RA 172..2698 17..2544 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:03 Download gff for BO03662.complete
Subject Subject Range Query Range Percent Splice Strand
csw-RA 165..2698 10..2546 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:08 Download gff for BO03662.complete
Subject Subject Range Query Range Percent Splice Strand
csw-RA 172..2698 17..2544 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:08 Download gff for BO03662.complete
Subject Subject Range Query Range Percent Splice Strand
X 2109235..2109414 509..688 100 -> Plus
X 2109483..2109600 689..806 100 -> Plus
X 2095010..2095197 31..218 100 -> Plus
X 2095270..2095396 219..345 100 -> Plus
X 2108380..2108542 346..508 100 -> Plus
X 2109729..2110666 807..1744 100 -> Plus
X 2110745..2110835 1745..1835 100 -> Plus
X 2110950..2111139 1836..2025 100 -> Plus
X 2111205..2111623 2026..2444 100 -> Plus
X 2111704..2111802 2445..2544 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:55 Download gff for BO03662.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1989043..1989230 31..218 100 -> Plus
arm_X 1989303..1989429 219..345 100 -> Plus
arm_X 2002413..2002575 346..508 100 -> Plus
arm_X 2003268..2003447 509..688 100 -> Plus
arm_X 2003516..2003633 689..806 100 -> Plus
arm_X 2003762..2004699 807..1744 100 -> Plus
arm_X 2004778..2004868 1745..1835 100 -> Plus
arm_X 2004983..2005172 1836..2025 100 -> Plus
arm_X 2005238..2005656 2026..2444 100 -> Plus
arm_X 2005737..2005835 2445..2544 98   Plus

BO03662.pep Sequence

Translation from 16 to 2560

> BO03662.pep
MSSRRWFHPTISGIEAEKLLQEQGFDGSFLARLSSSNPGAFTLSVRRGNE
VTHIKIQNNGDFFDLYGGEKFATLPELVQYYMENGELKEKNGQAIELKQP
LICAEPTTERWFHGNLSGKEAEKLILERGKNGSFLVRESQSKPGDFVLSV
RTDDKVTHVMIRWQDKKYDVGGGESFGTLSELIDHYKRNPMVETCGTVVH
LRQPFNATRITAAGINARVEQLVKGGFWEEFESLQQDSRDTFSRNEGYKQ
ENRLKNRYRNILPYDHTRVKLLDVEHSVAGAEYINANYIRLPTDGDLYNM
SSSSESLNSSVPSCPACTAAQTQRNCSNCQLQNKTCVQCAVKSAILPYSN
CATCSRKSDSLSKHKRSESSASSSPSSGSGSGPGSSGTSGVSSVNGPGTP
TNLTSGTAGCLVGLLKRHSNDSSGAVSISMAEREREREREMFKTYIATQG
CLLTQQVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDEGRSE
QFGHARIQCVSENSTSDYTLREFLVSWRDQPARRIFHYHFQVWPDHGVPA
DPGCVLNFLQDVNTRQSHLAQAGEKPGPICVHCSAGIGRTGTFIVIDMIL
DQIVRNGLDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHYIQTLI
ARKRAEEQSLQVGREYTNIKYTGEIGNDSQRSPLPPAISSISLVPSKTPL
TPTSADLGTGMGLSMGVGMGVGNKHASKQQPPLPVVNCNNNNNGIGNSGC
SNGGGSSTTSSSNGSSNGNINALLGGIGLGLGGNMRKSNFYSDSLKQQQQ
REEQAPAGAAKFKNIPKDMIGLRPPSHAPALPPPPTPPRKTRASFLDH

BO03662.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:23
Subject Length Description Subject Range Query Range Score Percent Strand
csw-PA 841 CG3954-PA 1..841 1..841 4433 100 Plus
csw-PD 894 CG3954-PD 59..894 6..841 4410 100 Plus
csw-PB 945 CG3954-PB 211..922 111..839 3687 96.7 Plus
csw-PC 682 CG3954-PC 1..682 160..841 3604 100 Plus
l(1)G0232-PH 498 CG32697-PH 273..475 445..645 381 41 Plus
csw-PD 894 CG3954-PD 160..257 2..100 229 47.5 Plus
csw-PB 945 CG3954-PB 211..304 6..100 222 48.4 Plus