Clone Sequence Records
BO03672.3prime Sequence
649 bp (577 high quality bases) assembled on 2005-12-01
> BO03672.3prime
ATGGTCTAGAAAGCTTGCTTTGACGTACATGCCCATGCCGTACATGGTGC
TCCAATCGACGCCCTGGAAGCTGGACATGTCCACGTTGGCCAGCGCATAG
TTGGAGTAGGCAGCCGCCGGATTGGCAGCAGCGGCGGCGGCGGCAGCAGC
GGCATTCAGGGGATTGCCGGCCATTAAGCCAGCTTGCTGAGCGGCAGCGG
CCAGGCTGTGGGCTCCAGCGGCACCTGCCCCATTCGCGGCATTGGCCGCC
AGGGCGGCAGCCGCTGCTGCCGAGTGCGCCTGCGAAGCGGGATTCGAGAC
GGCGTTGTGGTGGCTCTGCTGCTGCTGCTGGGCGGCGGCCACATGGGCAT
TGTGGGTCTGCTGCTGGTGATGATGCTGCTGCTGTTGCTGCTGCTGGTGA
TGATGGGCAGCGGCGGCCACGCTTTGCGCCTGATGAGCCTGCATCAAGGC
GGCGTTGGCAGTGGCGGCGCTGGCGGGGATCGAGTAGGGTGCATATCTGA
CGCTATGCAGCGCATTCTGCGGATATGTGGTCAACAGCTTGCCGAAGCCA
GCCTGATTGGCAATCGAGGCTGCCCGCAGCGGCGTTTTGTACTTGAAATG
GGTTCTGTGATATGAGGGCGGACTGCTGGGCGGCAGCGGGCTGCTGCCG
BO03672.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:52:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5099-PB | 1905 | msi-RB | 1350..1902 | 574..22 | 2740 | 99.8 | Minus |
| CG5099-PA | 1821 | msi-RA | 1266..1818 | 574..22 | 2740 | 99.8 | Minus |
| CG5099-PB | 1905 | msi-RB | 1286..1351 | 639..574 | 305 | 98.4 | Minus |
| CG5099-PA | 1821 | msi-RA | 1202..1267 | 639..574 | 305 | 98.4 | Minus |
| CG4577-PA | 1338 | CG4577-RA | 145..183 | 396..358 | 170 | 97.4 | Minus |
| CG5674-PC | 1428 | CG5674-RC | 1183..1217 | 408..374 | 150 | 97.1 | Minus |
| CG5674-PA | 1470 | CG5674-RA | 1225..1259 | 408..374 | 150 | 97.1 | Minus |
| CG1343-PB | 1563 | Sp1-RB | 1402..1430 | 390..362 | 145 | 100 | Minus |
| CG5488-PA | 1938 | B-H2-RA | 351..389 | 406..368 | 145 | 94.8 | Minus |
| CG6667-PA | 2034 | dl-RA | 1432..1475 | 402..359 | 145 | 93.1 | Minus |
| CG6667-PB | 2034 | dl-RB | 1432..1475 | 402..359 | 145 | 93.1 | Minus |
| CG1343-PA | 2076 | Sp1-RA | 1915..1943 | 390..362 | 145 | 100 | Minus |
| CG3619-PA | 2502 | Dl-RA | 2092..2120 | 125..153 | 145 | 100 | Plus |
| CG3619-PB | 2502 | Dl-RB | 2092..2120 | 125..153 | 145 | 100 | Plus |
| CG5403-PA | 2721 | retn-RA | 1537..1575 | 396..358 | 145 | 94.8 | Minus |
| CG5403-PB | 2736 | retn-RB | 1552..1590 | 396..358 | 145 | 94.8 | Minus |
| CG17622-PA | 1068 | CG17622-RA | 535..572 | 396..359 | 140 | 94.7 | Minus |
| CG15240-PA | 1329 | CG15240-RA | 316..353 | 396..359 | 140 | 94.7 | Minus |
| CG3546-PA | 1893 | CG3546-RA | 1404..1441 | 396..359 | 140 | 94.7 | Minus |
| CG17742-PA | 459 | CG17742-RA | 229..270 | 399..358 | 135 | 92.8 | Minus |
| CG14307-PA | 1551 | fru-RA | 573..599 | 124..150 | 135 | 100 | Plus |
| CG2530-PA | 1653 | corto-RA | 118..144 | 384..358 | 135 | 100 | Minus |
| CG17265-PA | 1824 | CG17265-RA | 1516..1557 | 399..358 | 135 | 92.8 | Minus |
| CG14307-PD | 1998 | fru-RD | 573..599 | 124..150 | 135 | 100 | Plus |
| CG14307-PF | 2067 | fru-RF | 573..599 | 124..150 | 135 | 100 | Plus |
| CG14307-PH | 2088 | fru-RH | 573..599 | 124..150 | 135 | 100 | Plus |
| CG14307-PK | 2118 | fru-RK | 603..629 | 124..150 | 135 | 100 | Plus |
| CG14307-PB | 2370 | fru-RB | 876..902 | 124..150 | 135 | 100 | Plus |
| CG14307-PG | 2391 | fru-RG | 876..902 | 124..150 | 135 | 100 | Plus |
| CG14307-PL | 2565 | fru-RL | 573..599 | 124..150 | 135 | 100 | Plus |
| CG14307-PM | 2565 | fru-RM | 573..599 | 124..150 | 135 | 100 | Plus |
| CG14307-PC | 2565 | fru-RC | 573..599 | 124..150 | 135 | 100 | Plus |
| CG14307-PI | 2613 | fru-RI | 621..647 | 124..150 | 135 | 100 | Plus |
| CG14307-PJ | 2721 | fru-RJ | 729..755 | 124..150 | 135 | 100 | Plus |
| CG14307-PE | 2868 | fru-RE | 876..902 | 124..150 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:19:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msi-RH | 2676 | CG5099-RH | 1659..2288 | 649..18 | 3065 | 99.2 | Minus |
| msi-RF | 10175 | CG5099-RF | 1871..2500 | 649..18 | 3065 | 99.2 | Minus |
| msi-RE | 2840 | CG5099-RE | 1823..2452 | 649..18 | 3065 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:19:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25600268..25600748 | 498..18 | 2390 | 99.8 | Minus |
| 3R | 32079331 | 3R | 25600069..25600210 | 639..497 | 635 | 97.9 | Minus |
Blast to na_te.dros performed 2015-02-13 05:19:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6868 | 416..304 | 215 | 68.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6857 | 398..260 | 195 | 64.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6890 | 416..263 | 190 | 62.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2427 | 405..304 | 188 | 66 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6827 | 405..304 | 179 | 65 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1053..1160 | 414..298 | 178 | 68.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2451 | 405..304 | 167 | 67 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2499 | 442..298 | 163 | 62.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6824..6956 | 405..276 | 162 | 60.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2772..2869 | 405..308 | 157 | 62.2 | Minus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 641..734 | 318..411 | 154 | 65.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2529 | 416..301 | 132 | 61.2 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3218..3321 | 403..304 | 121 | 63.8 | Minus |
BO03672.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:46:25 Download gff for
BO03672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msi-PB | 1277..1905 | 19..649 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:51:48 Download gff for
BO03672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5099-PB | 1277..1905 | 19..649 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:51:51 Download gff for
BO03672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msi-RE | 1823..2456 | 13..649 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:49:48 Download gff for
BO03672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msi-RE | 1823..2456 | 13..649 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:49:48 Download gff for
BO03672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25600060..25600210 | 497..649 | 97 | -> | Minus |
| 3R | 25600270..25600752 | 13..496 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:51:51 Download gff for
BO03672.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21425782..21425932 | 497..649 | 97 | -> | Minus |
| arm_3R | 21425992..21426474 | 13..496 | 99 | | Minus |
BO03672.5prime Sequence
781 bp (699 high quality bases) assembled on 2005-12-01
> BO03672.5prime
GAAGTTATCAGTCGACATGCACGCGCTTCAGGAAGGCGCCACCGTGCTGC
ACCACCAGCAGCCACCGCCACCCACTTCTGGCGAGGATCACCTGCTCACC
GCTGATAGTTTCTTTTATGCACGCAGCAATCCCATGGAGAACGCGGCCGC
AGCAGCCGCCGCCGCAGCAGCGGGCTTGATTGATCCGCACCACAATCGCG
ATCTCCACCAGGCGCTGGTGGCCTCGATAGCCAATAATAGTGTGGCCGCC
ATCGGCGGTGGCCTGACCACAGCGGCAGTCTTGAAGAGTGCCGCTCAGCA
GTCCCAGCAGGCGGTGCAACAGAACCAGAACGCGGTAGTGGTGACACCGG
GACTGGAACAGCCCAAACAGGAACCAGCCCAACAGGCGGCACTGGCGCTG
CTCAAGGAGAATGTAAACGCCTCCGCCGGAGCGGGACAGAACAACGGTCA
GGCGGCCATGGGTGGCAGCAACAAGAGCGGCTCCTCTGGCAGATCCACGC
CCAGCCTGAGCGGAGGCAGTGGCTCCGATCCGGCACCCGGCAAACTCTTT
GTCGGCGGTCTCAGCTGGCAGACGTCGTCTGACAAGCTCAAGGAATACTT
CAACATGTTCGGCACCGTCACCGATGTGCTCATCATGAAGGATCCCGTCA
CCCAGCGCAGTCGCGGCTTTGGTTTCATCACATTCCAAGAACCCTGCACC
GTGGAGAAGGTTCTCAAGGTGCCCATTCACACACTCGATGGCAAGAAGAT
CGATCCCAAGCATGCCACCCCCAAAGAATCG
BO03672.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:52:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5099-PA | 1821 | msi-RA | 1..755 | 17..771 | 3775 | 100 | Plus |
| CG5099-PB | 1905 | msi-RB | 194..839 | 126..771 | 3230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:18:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msi-RA | 3984 | CG5099-RA | 490..1253 | 17..781 | 3800 | 99.9 | Plus |
| msi-RD | 2801 | CG5099-RD | 700..1355 | 125..781 | 3260 | 99.8 | Plus |
| msi-RF | 10175 | CG5099-RF | 788..1442 | 126..781 | 3255 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:18:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25594964..25595602 | 17..655 | 3195 | 100 | Plus |
| 3R | 32079331 | 3R | 25599504..25599622 | 653..771 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:18:21 has no hits.
BO03672.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:46:26 Download gff for
BO03672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msi-PA | 1..764 | 17..781 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:51:49 Download gff for
BO03672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5099-PA | 1..764 | 17..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:45:41 Download gff for
BO03672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msi-RA | 484..1253 | 9..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:38:13 Download gff for
BO03672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msi-RA | 484..1253 | 9..781 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:38:13 Download gff for
BO03672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25594958..25595602 | 9..655 | 99 | -> | Plus |
| 3R | 25599507..25599631 | 656..781 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:45:41 Download gff for
BO03672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21420680..21421324 | 9..655 | 99 | -> | Plus |
| arm_3R | 21425229..21425353 | 656..781 | 99 | | Plus |
BO03672.complete Sequence
1855 bp assembled on 2007-10-05
GenBank Submission: FJ629582
> BO03672.complete
GAAGTTATCAGTCGACATGCACGCGCTTCAGGAAGGCGCCACCGTGCTGC
ACCACCAGCAGCCACCGCCACCCACTTCTGGCGAGGATCACCTGCTCACC
GCTGATAGTTTCTTTTATGCACGCAGCAATCCCATGGAGAACGCGGCCGC
AGCAGCCGCCGCCGCAGCAGCGGGCTTGATTGATCCGCACCACAATCGCG
ATCTCCACCAGGCGCTGGTGGCCTCGATAGCCAATAATAGTGTGGCCGCC
ATCGGCGGTGGCCTGACCACAGCGGCAGTCTTGAAGAGTGCCGCTCAGCA
GTCCCAGCAGGCGGTGCAACAGAACCAGAACGCGGTAGTGGTGACACCGG
GACTGGAACAGCCCAAACAGGAACCAGCCCAACAGGCGGCACTGGCGCTG
CTCAAGGAGAATGTAAACGCCTCCGCCGGAGCGGGACAGAACAACGGTCA
GGCGGCCATGGGTGGCAGCAACAAGAGCGGCTCCTCTGGCAGATCCACGC
CCAGCCTGAGCGGAGGCAGTGGCTCCGATCCGGCACCCGGCAAACTCTTT
GTCGGCGGTCTCAGCTGGCAGACGTCGTCTGACAAGCTCAAGGAATACTT
CAACATGTTCGGCACCGTCACCGATGTGCTCATCATGAAGGATCCCGTCA
CCCAGCGCAGTCGCGGCTTTGGTTTCATCACATTCCAAGAACCCTGCACC
GTGGAGAAGGTTCTCAAGGTGCCCATTCACACACTCGATGGCAAGAAGAT
CGATCCCAAGCATGCCACCCCAAAGAATCGACCTCGTCAGGCCAACAAGA
CCAAGAAGATCTTCGTGGGCGGCGTCTCACAGGATACTTCGGCCGAGGAG
GTTAAGGCTTACTTCAGCCAGTTCGGACCCGTCGAGGAGACGGTTATGTT
GATGGACCAGCAGACAAAGCGCCACCGTGGCTTCGGATTTGTCACCTTTG
AGAATGAGGATGTGGTCGATCGCGTATGTGAGATTCACTTCCACACCATC
AAGAACAAGAAGGTCGAGTGCAAGAAGGCACAGCCCAAGGAAGCAGTCAC
ACCGGCTGCTCAGCTTCTCCAGAAGCGCATTATGTTGGGCACCCTCGGCG
TCCAGCTGCCCACAGCTCCTGGCCAGCTGATTGGAGCCCGTGGTGCCGGC
GTGGCCACCATGAACCCACTGGCCATGCTTCAAAATCCCACACAGCTACT
GCAATCCCCGGCAGCAGCCGCTGCCGCCCAGCAGGCCGCCCTCATATCAC
AGAACCCATTTCAAGTACAAAACGCCGCTGCGGCAGCCTCGATTGCCAAT
CAGGCTGGCTTCGGCAAGCTGTTGACCACATATCCGCAGACTGCGCTGCA
TAGCGTCAGATATGCACCCTACTCGATCCCCGCCAGCGCCGCCACTGCCA
ACGCCGCCTTGATGCAGGCTCATCAGGCGCAAAGCGTGGCCGCCGCTGCC
CATCATCACCAGCAGCAGCAACAGCAGCAGCATCATCACCAGCAGCAGAC
CCACAATGCCCATGTGGCCGCCGCCCAGCAGCAGCAGCAGAGCCACCACA
ACGCCGTCTCGAATCCCGCTTCGCAGGCGCACTCGGCAGCAGCGGCTGCC
GCCCTGGCGGCCAATGCCGCGAATGGGGCAGGTGCCGCTGGAGCCCACAG
CCTGGCCGCTGCCGCTCAGCAAGCTGGCTTAATGGCCGGCAATCCCCTGA
ATGCCGCTGCTGCCGCCGCCGCCGCTGCTGCCAATCCGGCGGCTGCCTAC
TCCAACTATGCGCTGGCCAACGTGGACATGTCCAGCTTCCAGGGCGTCGA
TTGGAGCACCATGTACGGCATGGGCATGTACGTCAAAGCAAGCTTTCTAG
ACCAT
BO03672.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:50:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msi-RA | 1821 | CG5099-PA | 1..1818 | 17..1834 | 9090 | 100 | Plus |
| msi-RD | 1818 | CG5099-PD | 106..1815 | 125..1834 | 8550 | 100 | Plus |
| msi-RF | 1905 | CG5099-PF | 194..1902 | 126..1834 | 8545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:50:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msi-RA | 3984 | CG5099-RA | 490..2311 | 17..1838 | 9095 | 99.9 | Plus |
| msi-RD | 2801 | CG5099-RD | 700..2413 | 125..1838 | 8555 | 99.9 | Plus |
| msi-RF | 10175 | CG5099-RF | 788..2500 | 126..1838 | 8550 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:50:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25599504..25600210 | 653..1359 | 3535 | 100 | Plus |
| 3R | 32079331 | 3R | 25594964..25595602 | 17..655 | 3195 | 100 | Plus |
| 3R | 32079331 | 3R | 25600268..25600748 | 1358..1838 | 2390 | 99.8 | Plus |
Blast to na_te.dros performed 2014-11-27 10:50:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6868 | 1440..1552 | 215 | 68.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6890 | 1440..1593 | 190 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2427 | 1451..1552 | 188 | 66 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6827 | 1451..1552 | 179 | 65 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1053..1160 | 1442..1558 | 178 | 68.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2451 | 1451..1552 | 167 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2499 | 1414..1558 | 163 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6824..6956 | 1451..1580 | 162 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2772..2869 | 1451..1548 | 157 | 62.2 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 641..734 | 1538..1445 | 154 | 65.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2529 | 1440..1555 | 132 | 61.2 | Plus |
BO03672.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:24 Download gff for
BO03672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msi-RA | 1..1821 | 17..1837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:18:45 Download gff for
BO03672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msi-RA | 446..2277 | 9..1843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:54 Download gff for
BO03672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msi-RA | 490..2311 | 17..1839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:24 Download gff for
BO03672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msi-RA | 446..2277 | 9..1843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:13 Download gff for
BO03672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msi-RA | 490..2311 | 17..1839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:13 Download gff for
BO03672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25594964..25595602 | 17..655 | 100 | -> | Plus |
| 3R | 25599507..25600210 | 656..1359 | 100 | -> | Plus |
| 3R | 25600270..25600748 | 1360..1839 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:54 Download gff for
BO03672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21420686..21421324 | 17..655 | 100 | -> | Plus |
| arm_3R | 21425229..21425932 | 656..1359 | 100 | -> | Plus |
| arm_3R | 21425992..21426470 | 1360..1839 | 99 | | Plus |
BO03672.pep Sequence
Translation from 16 to 1855
> BO03672.pep
MHALQEGATVLHHQQPPPPTSGEDHLLTADSFFYARSNPMENAAAAAAAA
AAGLIDPHHNRDLHQALVASIANNSVAAIGGGLTTAAVLKSAAQQSQQAV
QQNQNAVVVTPGLEQPKQEPAQQAALALLKENVNASAGAGQNNGQAAMGG
SNKSGSSGRSTPSLSGGSGSDPAPGKLFVGGLSWQTSSDKLKEYFNMFGT
VTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKVPIHTLDGKKIDPKHA
TPKNRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQT
KRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKEAVTPAAQL
LQKRIMLGTLGVQLPTAPGQLIGARGAGVATMNPLAMLQNPTQLLQSPAA
AAAAQQAALISQNPFQVQNAAAAASIANQAGFGKLLTTYPQTALHSVRYA
PYSIPASAATANAALMQAHQAQSVAAAAHHHQQQQQQQHHHQQQTHNAHV
AAAQQQQQSHHNAVSNPASQAHSAAAAAALAANAANGAGAAGAHSLAAAA
QQAGLMAGNPLNAAAAAAAAAANPAAAYSNYALANVDMSSFQGVDWSTMY
GMGMYVKASFLDH
BO03672.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:23:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msi-PA | 606 | CG5099-PA | 1..606 | 1..606 | 3078 | 100 | Plus |
| msi-PD | 605 | CG5099-PD | 36..605 | 37..606 | 2881 | 100 | Plus |
| msi-PF | 634 | CG5099-PF | 66..634 | 38..606 | 2877 | 100 | Plus |
| msi-PE | 618 | CG5099-PE | 50..618 | 38..606 | 2877 | 100 | Plus |
| msi-PC | 634 | CG5099-PC | 66..634 | 38..606 | 2877 | 100 | Plus |
