Clone BO03673 Report

Search the DGRC for BO03673

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:36
Well:73
Vector:pDNR-Dual
Associated Gene/Transcriptfz-RA
Protein status:BO03673.pep: validated full length
Sequenced Size:1780

Clone Sequence Records

BO03673.3prime Sequence

692 bp (673 high quality bases) assembled on 2005-12-01

> BO03673.3prime
ATGGTCTAGAAAGCTTGCCTTGACGTACGCCTGCGCCCGGGTCCGGGGCT
CCTTGCCCTGCAACCTCTCCACGAAGTTCCGCCAGCTGACCATCGTCTTG
CTGGAATACAGCCAAACGCTGGAAGTGACCCCCACCAGCATGGAGCAAAG
GTACTTGACCATAAAGATCTGAAAGATGGGGCGGGCTTCTGGAGATCCCG
GCGCCCTGGCTGCCGGGCACGGAATTGAGAAGGGCTTGCAGATATCCCTG
TGCCATTGGATCATCCACTCGTCAAAGTTGTAGTACTCGTAGAACAAGCA
GCCCAGTAATCCCACGGCGGGCAGAATGAAAAGTCCAGAGAAGAAACCTA
TTCGCAACATCAGGCGCTCCAGTTTGTCTGTCCTCTTTCCGTCCGTTTTC
ATAACTGTCCGGATCCGGAAAAGCGAAATAAATCCGGCCAGCAGGAATAG
TGCTCCGATCGAGAGATAAATGCAGAGTGGAAGGATCAGGAACGCGCCCA
GGGAGTGCGTGTCCAGCTGGCCCACGAAACAAACGCCAGAAAGGATGTCA
CCTTCAACTTTAGCCAGGGCCAGAACGGAGATGGTCTGAAGGGCGGGCAC
CGCCCAGGCAACCAGGTGGAATAAGTGCGACTTGTTCTCAATCGCCTCGT
GGCCCCATTTGAGGCCAGCGGCCAAAAACCAGGCGAATGCCA

BO03673.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG17697-PA 1746 fz-RA 1073..1743 692..22 3355 100 Minus
CG17697-PB 1248 fz-RB 1073..1215 692..550 715 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
fz-RC 3817 CG17697-RC 1785..2455 692..22 3355 100 Minus
fz-RA 3817 CG17697-RA 1785..2455 692..22 3355 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14366746..14367277 553..22 2660 100 Minus
3L 28110227 3L 14317197..14317339 692..550 715 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:38:20 has no hits.

BO03673.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:46:27 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:51:51 Download gff for BO03673.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17697-PA 1074..1746 19..691 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:33:52 Download gff for BO03673.3prime
Subject Subject Range Query Range Percent Splice Strand
fz-RA 1786..2458 19..691 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:16:39 Download gff for BO03673.3prime
Subject Subject Range Query Range Percent Splice Strand
fz-RA 1786..2458 19..691 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:16:39 Download gff for BO03673.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14317198..14317337 552..691 100 -> Minus
3L 14366748..14367280 19..551 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:33:52 Download gff for BO03673.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14310298..14310437 552..691 100 -> Minus
arm_3L 14359848..14360380 19..551 99   Minus

BO03673.5prime Sequence

775 bp (665 high quality bases) assembled on 2005-12-01

> BO03673.5prime
GAAGTTATCAGTCGACATGTGGCGTCAAATCCTGTTTATTTTACCCACCC
TGATACAGGGGGTCCAGCGCTACGATCAGAGCCCCCTCGATGCGAGTCCG
TATTATCGCAGCGGCGGGGGATTAATGGCCAGTTCTGGGACCGAACTAGA
TGGACTGCCACATCACAATCGCTGTGAACCCATCACCATATCGATCTGCA
AGAATATACCATATAACATGACCATTATGCCAAATCTTATTGGCCATACC
AAGCAGGAGGAGGCGGGTCTGGAGGTCCATCAGTTTGCTCCGCTCGTGAA
GATCGGCTGCAGTGATGACCTCCAGTTGTTCCTCTGTTCCCTGTACGTTC
CGGTCTGCACAATTTTGGAGCGACCCATTCCGCCTTGTCGATCTCTGTGC
GAATCGGCGCGGGTATGTGAAAAGTTAATGAAAACCTACAACTTTAACTG
GCCGGAAAATCTGGAGTGCTCCAAATTTCCCGTCCATGGAGGCGAGGATT
TGTGCGTGGCGGAGAATACCACATCATCGGCCTCCACGGCGGCCACGCCC
ACAAGGAGTGTGGCTAAGGTCACTACCCGTAAACACCAGACGGGCGTAGA
AAGTCCGCACCGAAACATTGGATTCGTGTGCCCCGTGCAACTGAAAACGC
CTCTGGGAATGGGCTACGAACTAAAAGTTGGCGGAAAGGATCTGCATGAC
TGTGGAGCCCCATGTCATGCCATGTTCTTCCCGGAGAGAGAAAGGACTGT
GCTTCGATACTGGGTTGGATCCTGG

BO03673.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG17697-PB 1248 fz-RB 1..759 17..775 3795 100 Plus
CG17697-PA 1746 fz-RA 1..759 17..775 3795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
fz-RC 3817 CG17697-RC 713..1471 17..775 3795 100 Plus
fz-RA 3817 CG17697-RA 713..1471 17..775 3795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14275055..14275727 17..689 3365 100 Plus
3L 28110227 3L 14304895..14304983 687..775 445 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:51:59 has no hits.

BO03673.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:46:28 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:51:52 Download gff for BO03673.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17697-PA 1..759 17..775 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:38:35 Download gff for BO03673.5prime
Subject Subject Range Query Range Percent Splice Strand
fz-RB 713..1471 17..775 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:34:51 Download gff for BO03673.5prime
Subject Subject Range Query Range Percent Splice Strand
fz-RA 713..1471 17..775 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:34:51 Download gff for BO03673.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14275055..14275726 17..688 100 -> Plus
3L 14304897..14304983 689..775 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:38:35 Download gff for BO03673.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14268155..14268826 17..688 100 -> Plus
arm_3L 14297997..14298083 689..775 100   Plus

BO03673.complete Sequence

1780 bp assembled on 2006-10-10

GenBank Submission: FJ629583

> BO03673.complete
GAAGTTATCAGTCGACATGTGGCGTCAAATCCTGTTTATTTTACCCACCC
TGATACAGGGGGTCCAGCGCTACGATCAGAGCCCCCTCGATGCGAGTCCG
TATTATCGCAGCGGCGGGGGATTAATGGCCAGTTCTGGGACCGAACTAGA
TGGACTGCCACATCACAATCGCTGTGAACCCATCACCATATCGATCTGCA
AGAATATACCATATAACATGACCATTATGCCAAATCTTATTGGCCATACC
AAGCAGGAGGAGGCGGGTCTGGAGGTCCATCAGTTTGCTCCGCTCGTGAA
GATCGGCTGCAGTGATGACCTCCAGTTGTTCCTCTGTTCCCTGTACGTTC
CGGTCTGCACAATTTTGGAGCGACCCATTCCGCCTTGTCGATCTCTGTGC
GAATCGGCGCGGGTATGTGAAAAGTTAATGAAAACCTACAACTTTAACTG
GCCGGAAAATCTGGAGTGCTCCAAATTTCCCGTCCATGGAGGCGAGGATT
TGTGCGTGGCGGAGAATACCACATCATCGGCCTCCACGGCGGCCACGCCC
ACAAGGAGTGTGGCTAAGGTCACTACCCGTAAACACCAGACGGGCGTAGA
AAGTCCGCACCGAAACATTGGATTCGTGTGCCCCGTGCAACTGAAAACGC
CTCTGGGAATGGGCTACGAACTAAAAGTTGGCGGAAAGGATCTGCATGAC
TGTGGAGCCCCATGTCATGCCATGTTCTTCCCGGAGAGAGAAAGGACTGT
GCTTCGATACTGGGTTGGATCCTGGGCAGCGGTCTGTGTAGCCAGCTGCT
TGTTTACGGTGCTCACCTTCTTGATTGACTCGTCGCGTTTTCGCTACCCG
GAGAGGGCCATTGTCTTCTTGGCCGTTTGCTACTTGGTAGTTGGATGTGC
CTACGTGGCGGGACTGGGAGCGGGCGACTCTGTGTCGTGCCGCGAACCAT
TTCCGCCGCCCGTCAAACTCGGCCGCCTGCAGATGATGTCCACCATCACC
CAGGGCCACCGACAAACCACGTCCTGCACGGTTTTATTCATGGCACTCTA
CTTCTGCTGCATGGCGGCCTTCGCGTGGTGGTCGTGTCTGGCATTCGCCT
GGTTTTTGGCCGCTGGCCTCAAATGGGGCCACGAGGCGATTGAGAACAAG
TCGCACTTATTCCACCTGGTTGCCTGGGCGGTGCCCGCCCTTCAGACCAT
CTCCGTTCTGGCCCTGGCTAAAGTTGAAGGTGACATCCTTTCTGGCGTTT
GTTTCGTGGGCCAGCTGGACACGCACTCCCTGGGCGCGTTCCTGATCCTT
CCACTCTGCATTTATCTCTCGATCGGAGCACTATTCCTGCTGGCCGGATT
TATTTCGCTTTTCCGGATCCGGACAGTTATGAAAACGGACGGAAAGAGGA
CAGACAAACTGGAGCGCCTGATGTTGCGAATAGGTTTCTTCTCTGGACTT
TTCATTCTGCCCGCCGTGGGATTACTGGGCTGCTTGTTCTACGAGTACTA
CAACTTTGACGAGTGGATGATCCAATGGCACAGGGATATCTGCAAGCCCT
TCTCAATTCCGTGCCCGGCAGCCAGGGCGCCGGGATCTCCAGAAGCCCGC
CCCATCTTTCAGATCTTTATGGTCAAGTACCTTTGCTCCATGCTGGTGGG
GGTCACTTCCAGCGTTTGGCTGTATTCCAGCAAGACGATGGTCAGCTGGC
GGAACTTCGTGGAGAGGTTGCAGGGCAAGGAGCCCCGGACCCGGGCGCAG
GCGTACGTCAAGGCAAGCTTTCTAGACCAT

BO03673.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
fz-RC 1839 CG17697-PC 1..1743 17..1759 8715 100 Plus
fz-RA 1746 CG17697-PA 1..1743 17..1759 8715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
fz-RC 3817 CG17697-RC 713..2455 17..1759 8715 100 Plus
fz-RA 3817 CG17697-RA 713..2455 17..1759 8715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14275055..14275727 17..689 3365 100 Plus
3L 28110227 3L 14366746..14367277 1228..1759 2660 100 Plus
3L 28110227 3L 14317109..14317339 1001..1231 1155 100 Plus
3L 28110227 3L 14311860..14312056 808..1004 985 100 Plus
3L 28110227 3L 14304895..14305018 687..810 620 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:11:47 has no hits.

BO03673.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:04 Download gff for BO03673.complete
Subject Subject Range Query Range Percent Splice Strand
fz-RA 1..1746 17..1762 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:52:49 Download gff for BO03673.complete
Subject Subject Range Query Range Percent Splice Strand
fz-RA 681..2426 17..1764 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:20 Download gff for BO03673.complete
Subject Subject Range Query Range Percent Splice Strand
fz-RA 713..2458 17..1764 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:04 Download gff for BO03673.complete
Subject Subject Range Query Range Percent Splice Strand
fz-RA 681..2426 17..1762 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:07 Download gff for BO03673.complete
Subject Subject Range Query Range Percent Splice Strand
fz-RA 713..2458 17..1764 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:07 Download gff for BO03673.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14275055..14275726 17..688 100 -> Plus
3L 14304897..14305016 689..808 100 -> Plus
3L 14311861..14312055 809..1003 100 -> Plus
3L 14317112..14317337 1004..1229 100 -> Plus
3L 14366748..14367280 1230..1764 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:20 Download gff for BO03673.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14268155..14268826 17..688 100 -> Plus
arm_3L 14297997..14298116 689..808 100 -> Plus
arm_3L 14304961..14305155 809..1003 100 -> Plus
arm_3L 14310212..14310437 1004..1229 100 -> Plus
arm_3L 14359848..14360380 1230..1764 99   Plus

BO03673.pep Sequence

Translation from 16 to 1780

> BO03673.pep
MWRQILFILPTLIQGVQRYDQSPLDASPYYRSGGGLMASSGTELDGLPHH
NRCEPITISICKNIPYNMTIMPNLIGHTKQEEAGLEVHQFAPLVKIGCSD
DLQLFLCSLYVPVCTILERPIPPCRSLCESARVCEKLMKTYNFNWPENLE
CSKFPVHGGEDLCVAENTTSSASTAATPTRSVAKVTTRKHQTGVESPHRN
IGFVCPVQLKTPLGMGYELKVGGKDLHDCGAPCHAMFFPERERTVLRYWV
GSWAAVCVASCLFTVLTFLIDSSRFRYPERAIVFLAVCYLVVGCAYVAGL
GAGDSVSCREPFPPPVKLGRLQMMSTITQGHRQTTSCTVLFMALYFCCMA
AFAWWSCLAFAWFLAAGLKWGHEAIENKSHLFHLVAWAVPALQTISVLAL
AKVEGDILSGVCFVGQLDTHSLGAFLILPLCIYLSIGALFLLAGFISLFR
IRTVMKTDGKRTDKLERLMLRIGFFSGLFILPAVGLLGCLFYEYYNFDEW
MIQWHRDICKPFSIPCPAARAPGSPEARPIFQIFMVKYLCSMLVGVTSSV
WLYSSKTMVSWRNFVERLQGKEPRTRAQAYVKASFLDH

BO03673.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
fz-PC 612 CG17697-PC 1..581 1..581 3128 100 Plus
fz-PA 581 CG17697-PA 1..581 1..581 3128 100 Plus
fz2-PG 694 CG9739-PG 63..635 52..582 1003 37.6 Plus
fz2-PE 694 CG9739-PE 63..635 52..582 1003 37.6 Plus
fz2-PD 694 CG9739-PD 63..635 52..582 1003 37.6 Plus