Clone Sequence Records
BO03673.3prime Sequence
692 bp (673 high quality bases) assembled on 2005-12-01
> BO03673.3prime
ATGGTCTAGAAAGCTTGCCTTGACGTACGCCTGCGCCCGGGTCCGGGGCT
CCTTGCCCTGCAACCTCTCCACGAAGTTCCGCCAGCTGACCATCGTCTTG
CTGGAATACAGCCAAACGCTGGAAGTGACCCCCACCAGCATGGAGCAAAG
GTACTTGACCATAAAGATCTGAAAGATGGGGCGGGCTTCTGGAGATCCCG
GCGCCCTGGCTGCCGGGCACGGAATTGAGAAGGGCTTGCAGATATCCCTG
TGCCATTGGATCATCCACTCGTCAAAGTTGTAGTACTCGTAGAACAAGCA
GCCCAGTAATCCCACGGCGGGCAGAATGAAAAGTCCAGAGAAGAAACCTA
TTCGCAACATCAGGCGCTCCAGTTTGTCTGTCCTCTTTCCGTCCGTTTTC
ATAACTGTCCGGATCCGGAAAAGCGAAATAAATCCGGCCAGCAGGAATAG
TGCTCCGATCGAGAGATAAATGCAGAGTGGAAGGATCAGGAACGCGCCCA
GGGAGTGCGTGTCCAGCTGGCCCACGAAACAAACGCCAGAAAGGATGTCA
CCTTCAACTTTAGCCAGGGCCAGAACGGAGATGGTCTGAAGGGCGGGCAC
CGCCCAGGCAACCAGGTGGAATAAGTGCGACTTGTTCTCAATCGCCTCGT
GGCCCCATTTGAGGCCAGCGGCCAAAAACCAGGCGAATGCCA
BO03673.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:52:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17697-PA | 1746 | fz-RA | 1073..1743 | 692..22 | 3355 | 100 | Minus |
CG17697-PB | 1248 | fz-RB | 1073..1215 | 692..550 | 715 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:38:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fz-RC | 3817 | CG17697-RC | 1785..2455 | 692..22 | 3355 | 100 | Minus |
fz-RA | 3817 | CG17697-RA | 1785..2455 | 692..22 | 3355 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:38:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14366746..14367277 | 553..22 | 2660 | 100 | Minus |
3L | 28110227 | 3L | 14317197..14317339 | 692..550 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:38:20 has no hits.
BO03673.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:46:27 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:51:51 Download gff for
BO03673.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17697-PA | 1074..1746 | 19..691 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:33:52 Download gff for
BO03673.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fz-RA | 1786..2458 | 19..691 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:16:39 Download gff for
BO03673.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fz-RA | 1786..2458 | 19..691 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:16:39 Download gff for
BO03673.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14317198..14317337 | 552..691 | 100 | -> | Minus |
3L | 14366748..14367280 | 19..551 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:33:52 Download gff for
BO03673.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14310298..14310437 | 552..691 | 100 | -> | Minus |
arm_3L | 14359848..14360380 | 19..551 | 99 | | Minus |
BO03673.5prime Sequence
775 bp (665 high quality bases) assembled on 2005-12-01
> BO03673.5prime
GAAGTTATCAGTCGACATGTGGCGTCAAATCCTGTTTATTTTACCCACCC
TGATACAGGGGGTCCAGCGCTACGATCAGAGCCCCCTCGATGCGAGTCCG
TATTATCGCAGCGGCGGGGGATTAATGGCCAGTTCTGGGACCGAACTAGA
TGGACTGCCACATCACAATCGCTGTGAACCCATCACCATATCGATCTGCA
AGAATATACCATATAACATGACCATTATGCCAAATCTTATTGGCCATACC
AAGCAGGAGGAGGCGGGTCTGGAGGTCCATCAGTTTGCTCCGCTCGTGAA
GATCGGCTGCAGTGATGACCTCCAGTTGTTCCTCTGTTCCCTGTACGTTC
CGGTCTGCACAATTTTGGAGCGACCCATTCCGCCTTGTCGATCTCTGTGC
GAATCGGCGCGGGTATGTGAAAAGTTAATGAAAACCTACAACTTTAACTG
GCCGGAAAATCTGGAGTGCTCCAAATTTCCCGTCCATGGAGGCGAGGATT
TGTGCGTGGCGGAGAATACCACATCATCGGCCTCCACGGCGGCCACGCCC
ACAAGGAGTGTGGCTAAGGTCACTACCCGTAAACACCAGACGGGCGTAGA
AAGTCCGCACCGAAACATTGGATTCGTGTGCCCCGTGCAACTGAAAACGC
CTCTGGGAATGGGCTACGAACTAAAAGTTGGCGGAAAGGATCTGCATGAC
TGTGGAGCCCCATGTCATGCCATGTTCTTCCCGGAGAGAGAAAGGACTGT
GCTTCGATACTGGGTTGGATCCTGG
BO03673.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:52:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17697-PB | 1248 | fz-RB | 1..759 | 17..775 | 3795 | 100 | Plus |
CG17697-PA | 1746 | fz-RA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:52:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fz-RC | 3817 | CG17697-RC | 713..1471 | 17..775 | 3795 | 100 | Plus |
fz-RA | 3817 | CG17697-RA | 713..1471 | 17..775 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:51:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14275055..14275727 | 17..689 | 3365 | 100 | Plus |
3L | 28110227 | 3L | 14304895..14304983 | 687..775 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:51:59 has no hits.
BO03673.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:46:28 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:51:52 Download gff for
BO03673.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17697-PA | 1..759 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:38:35 Download gff for
BO03673.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fz-RB | 713..1471 | 17..775 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:34:51 Download gff for
BO03673.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fz-RA | 713..1471 | 17..775 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:34:51 Download gff for
BO03673.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14275055..14275726 | 17..688 | 100 | -> | Plus |
3L | 14304897..14304983 | 689..775 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:38:35 Download gff for
BO03673.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14268155..14268826 | 17..688 | 100 | -> | Plus |
arm_3L | 14297997..14298083 | 689..775 | 100 | | Plus |
BO03673.complete Sequence
1780 bp assembled on 2006-10-10
GenBank Submission: FJ629583
> BO03673.complete
GAAGTTATCAGTCGACATGTGGCGTCAAATCCTGTTTATTTTACCCACCC
TGATACAGGGGGTCCAGCGCTACGATCAGAGCCCCCTCGATGCGAGTCCG
TATTATCGCAGCGGCGGGGGATTAATGGCCAGTTCTGGGACCGAACTAGA
TGGACTGCCACATCACAATCGCTGTGAACCCATCACCATATCGATCTGCA
AGAATATACCATATAACATGACCATTATGCCAAATCTTATTGGCCATACC
AAGCAGGAGGAGGCGGGTCTGGAGGTCCATCAGTTTGCTCCGCTCGTGAA
GATCGGCTGCAGTGATGACCTCCAGTTGTTCCTCTGTTCCCTGTACGTTC
CGGTCTGCACAATTTTGGAGCGACCCATTCCGCCTTGTCGATCTCTGTGC
GAATCGGCGCGGGTATGTGAAAAGTTAATGAAAACCTACAACTTTAACTG
GCCGGAAAATCTGGAGTGCTCCAAATTTCCCGTCCATGGAGGCGAGGATT
TGTGCGTGGCGGAGAATACCACATCATCGGCCTCCACGGCGGCCACGCCC
ACAAGGAGTGTGGCTAAGGTCACTACCCGTAAACACCAGACGGGCGTAGA
AAGTCCGCACCGAAACATTGGATTCGTGTGCCCCGTGCAACTGAAAACGC
CTCTGGGAATGGGCTACGAACTAAAAGTTGGCGGAAAGGATCTGCATGAC
TGTGGAGCCCCATGTCATGCCATGTTCTTCCCGGAGAGAGAAAGGACTGT
GCTTCGATACTGGGTTGGATCCTGGGCAGCGGTCTGTGTAGCCAGCTGCT
TGTTTACGGTGCTCACCTTCTTGATTGACTCGTCGCGTTTTCGCTACCCG
GAGAGGGCCATTGTCTTCTTGGCCGTTTGCTACTTGGTAGTTGGATGTGC
CTACGTGGCGGGACTGGGAGCGGGCGACTCTGTGTCGTGCCGCGAACCAT
TTCCGCCGCCCGTCAAACTCGGCCGCCTGCAGATGATGTCCACCATCACC
CAGGGCCACCGACAAACCACGTCCTGCACGGTTTTATTCATGGCACTCTA
CTTCTGCTGCATGGCGGCCTTCGCGTGGTGGTCGTGTCTGGCATTCGCCT
GGTTTTTGGCCGCTGGCCTCAAATGGGGCCACGAGGCGATTGAGAACAAG
TCGCACTTATTCCACCTGGTTGCCTGGGCGGTGCCCGCCCTTCAGACCAT
CTCCGTTCTGGCCCTGGCTAAAGTTGAAGGTGACATCCTTTCTGGCGTTT
GTTTCGTGGGCCAGCTGGACACGCACTCCCTGGGCGCGTTCCTGATCCTT
CCACTCTGCATTTATCTCTCGATCGGAGCACTATTCCTGCTGGCCGGATT
TATTTCGCTTTTCCGGATCCGGACAGTTATGAAAACGGACGGAAAGAGGA
CAGACAAACTGGAGCGCCTGATGTTGCGAATAGGTTTCTTCTCTGGACTT
TTCATTCTGCCCGCCGTGGGATTACTGGGCTGCTTGTTCTACGAGTACTA
CAACTTTGACGAGTGGATGATCCAATGGCACAGGGATATCTGCAAGCCCT
TCTCAATTCCGTGCCCGGCAGCCAGGGCGCCGGGATCTCCAGAAGCCCGC
CCCATCTTTCAGATCTTTATGGTCAAGTACCTTTGCTCCATGCTGGTGGG
GGTCACTTCCAGCGTTTGGCTGTATTCCAGCAAGACGATGGTCAGCTGGC
GGAACTTCGTGGAGAGGTTGCAGGGCAAGGAGCCCCGGACCCGGGCGCAG
GCGTACGTCAAGGCAAGCTTTCTAGACCAT
BO03673.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:11:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fz-RC | 1839 | CG17697-PC | 1..1743 | 17..1759 | 8715 | 100 | Plus |
fz-RA | 1746 | CG17697-PA | 1..1743 | 17..1759 | 8715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:11:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fz-RC | 3817 | CG17697-RC | 713..2455 | 17..1759 | 8715 | 100 | Plus |
fz-RA | 3817 | CG17697-RA | 713..2455 | 17..1759 | 8715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:11:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14275055..14275727 | 17..689 | 3365 | 100 | Plus |
3L | 28110227 | 3L | 14366746..14367277 | 1228..1759 | 2660 | 100 | Plus |
3L | 28110227 | 3L | 14317109..14317339 | 1001..1231 | 1155 | 100 | Plus |
3L | 28110227 | 3L | 14311860..14312056 | 808..1004 | 985 | 100 | Plus |
3L | 28110227 | 3L | 14304895..14305018 | 687..810 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:11:47 has no hits.
BO03673.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:04 Download gff for
BO03673.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fz-RA | 1..1746 | 17..1762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:52:49 Download gff for
BO03673.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fz-RA | 681..2426 | 17..1764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:20 Download gff for
BO03673.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fz-RA | 713..2458 | 17..1764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:04 Download gff for
BO03673.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fz-RA | 681..2426 | 17..1762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:07 Download gff for
BO03673.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fz-RA | 713..2458 | 17..1764 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:07 Download gff for
BO03673.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14275055..14275726 | 17..688 | 100 | -> | Plus |
3L | 14304897..14305016 | 689..808 | 100 | -> | Plus |
3L | 14311861..14312055 | 809..1003 | 100 | -> | Plus |
3L | 14317112..14317337 | 1004..1229 | 100 | -> | Plus |
3L | 14366748..14367280 | 1230..1764 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:20 Download gff for
BO03673.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14268155..14268826 | 17..688 | 100 | -> | Plus |
arm_3L | 14297997..14298116 | 689..808 | 100 | -> | Plus |
arm_3L | 14304961..14305155 | 809..1003 | 100 | -> | Plus |
arm_3L | 14310212..14310437 | 1004..1229 | 100 | -> | Plus |
arm_3L | 14359848..14360380 | 1230..1764 | 99 | | Plus |
BO03673.pep Sequence
Translation from 16 to 1780
> BO03673.pep
MWRQILFILPTLIQGVQRYDQSPLDASPYYRSGGGLMASSGTELDGLPHH
NRCEPITISICKNIPYNMTIMPNLIGHTKQEEAGLEVHQFAPLVKIGCSD
DLQLFLCSLYVPVCTILERPIPPCRSLCESARVCEKLMKTYNFNWPENLE
CSKFPVHGGEDLCVAENTTSSASTAATPTRSVAKVTTRKHQTGVESPHRN
IGFVCPVQLKTPLGMGYELKVGGKDLHDCGAPCHAMFFPERERTVLRYWV
GSWAAVCVASCLFTVLTFLIDSSRFRYPERAIVFLAVCYLVVGCAYVAGL
GAGDSVSCREPFPPPVKLGRLQMMSTITQGHRQTTSCTVLFMALYFCCMA
AFAWWSCLAFAWFLAAGLKWGHEAIENKSHLFHLVAWAVPALQTISVLAL
AKVEGDILSGVCFVGQLDTHSLGAFLILPLCIYLSIGALFLLAGFISLFR
IRTVMKTDGKRTDKLERLMLRIGFFSGLFILPAVGLLGCLFYEYYNFDEW
MIQWHRDICKPFSIPCPAARAPGSPEARPIFQIFMVKYLCSMLVGVTSSV
WLYSSKTMVSWRNFVERLQGKEPRTRAQAYVKASFLDH
BO03673.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fz-PC | 612 | CG17697-PC | 1..581 | 1..581 | 3128 | 100 | Plus |
fz-PA | 581 | CG17697-PA | 1..581 | 1..581 | 3128 | 100 | Plus |
fz2-PG | 694 | CG9739-PG | 63..635 | 52..582 | 1003 | 37.6 | Plus |
fz2-PE | 694 | CG9739-PE | 63..635 | 52..582 | 1003 | 37.6 | Plus |
fz2-PD | 694 | CG9739-PD | 63..635 | 52..582 | 1003 | 37.6 | Plus |