Clone Sequence Records
BO03685.3prime Sequence
744 bp (684 high quality bases) assembled on 2005-12-01
> BO03685.3prime
ATGGTCTAGAAAGCTTGCTTTCATGTTCTCAAACTGATCGACGCGACGCT
TTGTGTTGCCCTTACGAATCTCGCGGAGCGTCTTGTACTTGTCACGTCCC
TGGCGAACGTTCTCGCGATGAATCTTATCGTTTGCCGTCTCTTTCGTCTC
GTCGCGAGACTGCGCCAAATCTTGTTTCAGAGCCTTGAGCTGATCGTGCA
AGCGTTCGTTGCGCTCGGCCAGCGTGCGTCTGTCCTCGATGGGGTCCTTG
ATATGCTCGTCGGTGTCCAGGTCGCGCGACACATCGCCACCGGCATCGCC
GTTCGTCAGCTCCTCCTCGTTCTCGTTCTCATCCTCGGCCACGTGGTGAT
GCTGCGGCGTTGTCGACGCGGCCAGCAGAGCGGCAGCGGCTTCAGCCTGC
TTGCGTCGGGCGTCTTCCACTTCGTCCTGCAGACGCTTTGTCTCCTCATC
CTTGGCGTTGACCTCGTCCTGAATGCGCTGCACCTCCATCTGCTTGGCCA
TGATCTCCTCCTCGAGCTTGAGCTTCTCGACGGCCTCCATATTCTTGGCC
TCCTCGAGGCGCTGCAGCATCGCCTGCAGCTCCTTCTGGCGCAGCTCCAG
CTCATCCTTGGCGGCCTGCAGCTGCTTCAGCTGCTCCTCCAGCCGGCGGA
TCATGTCCTGCGCCTCAAGCAGATCGCGCTGCGAACGCTCCATATCCTCC
TGCATCTGCTTTAGCCGATCCTCGTACTCCTGCTGCTTCTTTTT
BO03685.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:52:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10701-PE | 1728 | Moe-RE | 1004..1725 | 743..22 | 3585 | 99.8 | Minus |
| CG10701-PF | 1728 | Moe-RF | 1004..1725 | 743..22 | 3585 | 99.8 | Minus |
| CG10701-PG | 1728 | Moe-RG | 1004..1725 | 743..22 | 3585 | 99.8 | Minus |
| CG10701-PH | 1728 | Moe-RH | 1004..1725 | 743..22 | 3585 | 99.8 | Minus |
| CG10701-PI | 1728 | Moe-RI | 1004..1725 | 743..22 | 3585 | 99.8 | Minus |
| CG10701-PD | 1728 | Moe-RD | 1004..1725 | 743..22 | 3585 | 99.8 | Minus |
| CG10701-PA | 1923 | Moe-RA | 1545..1920 | 397..22 | 1880 | 100 | Minus |
| CG10701-PC | 1539 | Moe-RC | 1161..1536 | 397..22 | 1880 | 100 | Minus |
| CG10701-PJ | 1737 | Moe-RJ | 1359..1734 | 397..22 | 1880 | 100 | Minus |
| CG10701-PB | 1950 | Moe-RB | 1572..1947 | 397..22 | 1880 | 100 | Minus |
| CG10701-PA | 1923 | Moe-RA | 1190..1537 | 743..396 | 1715 | 99.7 | Minus |
| CG10701-PC | 1539 | Moe-RC | 806..1153 | 743..396 | 1715 | 99.7 | Minus |
| CG10701-PJ | 1737 | Moe-RJ | 1004..1351 | 743..396 | 1715 | 99.7 | Minus |
| CG10701-PB | 1950 | Moe-RB | 1217..1564 | 743..396 | 1715 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:27:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Moe-RK | 3064 | CG10701-RK | 1405..2126 | 743..22 | 3595 | 99.9 | Minus |
| Moe-RM | 2995 | CG10701-RM | 1336..2057 | 743..22 | 3595 | 99.9 | Minus |
| Moe-RD | 3003 | CG10701-RD | 1344..2065 | 743..22 | 3595 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:27:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8874511..8874858 | 396..743 | 1725 | 99.7 | Plus |
| X | 23542271 | X | 8874188..8874403 | 183..398 | 1080 | 100 | Plus |
| X | 23542271 | X | 8873950..8874113 | 22..185 | 820 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 18:27:56 has no hits.
BO03685.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:46:41 Download gff for
BO03685.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moe-PE | 1003..1728 | 19..744 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:52:13 Download gff for
BO03685.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10701-PD | 1003..1728 | 19..744 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:56:59 Download gff for
BO03685.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moe-RD | 1343..2076 | 9..744 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:11:21 Download gff for
BO03685.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moe-RD | 1343..2076 | 9..744 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:11:21 Download gff for
BO03685.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8873939..8874111 | 9..183 | 97 | <- | Plus |
| X | 8874189..8874401 | 184..396 | 100 | <- | Plus |
| X | 8874512..8874858 | 397..744 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:56:59 Download gff for
BO03685.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8767972..8768144 | 9..183 | 97 | <- | Plus |
| arm_X | 8768222..8768434 | 184..396 | 100 | <- | Plus |
| arm_X | 8768545..8768891 | 397..744 | 99 | | Plus |
BO03685.5prime Sequence
772 bp (677 high quality bases) assembled on 2005-12-01
> BO03685.5prime
GAAGTTATCAGTCGACATGTCTCCAAAAGCGCTAAATGTGCGCGTCACGA
CAATGGACGCGGAACTGGAGTTCGCCATTCAGTCGACGACGACGGGCAAG
CAATTGTTTGACCAGGTGGTGAAGACGATCGGCCTGCGAGAGGTTTGGTT
CTTTGGACTCCAGTACACCGACTCCAAGGGCGACTCCACATGGATCAAGC
TGTACAAAAAGGTGATGAACCAGGACGTGAAGAAGGAGAATCCCTTGCAG
TTTAGGTTCCGTGCCAAATTCTATCCCGAGGATGTGGCCGAGGAGCTGAT
CCAGGACATTACACTGCGTCTGTTCTACCTGCAGGTGAAGAATGCCATAC
TGACCGACGAGATCTATTGTCCGCCAGAGACATCCGTGCTGCTCGCCTCG
TACGCCGTCCAGGCGCGTCATGGTGACCACAATAAGACCACCCACACAGC
CGGCTTTCTGGCCAACGATCGCCTGCTGCCGCAGCGCGTCATCGACCAGC
ACAAGATGTCCAAGGACGAGTGGGAGCAGTCGATTATGACCTGGTGGCAG
GAGCATCGCAGCATGCTGCGCGAGGATGCCATGATGGAGTATCTGAAGAT
CGCCCAAGACCTGGAGATGTACGGCGTTAACTACTTTGAGATCCGCAACA
AGAAGGGCACGGATCTTTGGCTGGGCGTAGACGCACTGGGTCTGAACATT
TACGAGCAGGACGATAGGTTGACGCCGAAAATTGGTTTCCCATGGTCCGA
GATTCGCAACATTTCGTTCTCG
BO03685.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:52:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10701-PE | 1728 | Moe-RE | 1..756 | 17..772 | 3780 | 100 | Plus |
| CG10701-PF | 1728 | Moe-RF | 1..756 | 17..772 | 3780 | 100 | Plus |
| CG10701-PG | 1728 | Moe-RG | 1..756 | 17..772 | 3780 | 100 | Plus |
| CG10701-PH | 1728 | Moe-RH | 1..756 | 17..772 | 3780 | 100 | Plus |
| CG10701-PI | 1728 | Moe-RI | 1..756 | 17..772 | 3780 | 100 | Plus |
| CG10701-PJ | 1737 | Moe-RJ | 1..756 | 17..772 | 3780 | 100 | Plus |
| CG10701-PD | 1728 | Moe-RD | 1..756 | 17..772 | 3780 | 100 | Plus |
| CG10701-PB | 1950 | Moe-RB | 408..969 | 211..772 | 2810 | 100 | Plus |
| CG10701-PA | 1923 | Moe-RA | 381..942 | 211..772 | 2810 | 100 | Plus |
| CG10701-PC | 1539 | Moe-RC | 1..558 | 215..772 | 2790 | 100 | Plus |
| CG10701-PB | 1950 | Moe-RB | 68..249 | 30..211 | 910 | 100 | Plus |
| CG10701-PA | 1923 | Moe-RA | 43..222 | 32..211 | 900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:22:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Moe-RL | 2528 | CG10701-RL | 468..1223 | 17..772 | 3780 | 100 | Plus |
| Moe-RD | 3003 | CG10701-RD | 341..1096 | 17..772 | 3780 | 100 | Plus |
| Moe-RJ | 2401 | CG10701-RJ | 341..1096 | 17..772 | 3780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:21:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8875300..8875862 | 772..210 | 2815 | 100 | Minus |
| X | 23542271 | X | 8876571..8876753 | 213..31 | 915 | 100 | Minus |
| X | 23542271 | X | 19692542..19692697 | 405..250 | 180 | 74.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:22:00 has no hits.
BO03685.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:46:42 Download gff for
BO03685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moe-PH | 1..756 | 17..772 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:52:14 Download gff for
BO03685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10701-PH | 1..756 | 17..772 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:49:52 Download gff for
BO03685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moe-RJ | 334..1096 | 9..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:40:09 Download gff for
BO03685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moe-RJ | 334..1096 | 9..772 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:40:09 Download gff for
BO03685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8875300..8875860 | 212..772 | 100 | <- | Minus |
| X | 8876573..8876752 | 32..211 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:49:52 Download gff for
BO03685.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8769333..8769893 | 212..772 | 100 | <- | Minus |
| arm_X | 8770606..8770785 | 32..211 | 100 | <- | Minus |
BO03685.complete Sequence
1762 bp assembled on 2006-10-10
GenBank Submission: FJ629584
> BO03685.complete
GAAGTTATCAGTCGACATGTCTCCAAAAGCGCTAAATGTGCGCGTCACGA
CAATGGACGCGGAACTGGAGTTCGCCATTCAGTCGACGACGACGGGCAAG
CAATTGTTTGACCAGGTGGTGAAGACGATCGGCCTGCGAGAGGTTTGGTT
CTTTGGACTCCAGTACACCGACTCCAAGGGCGACTCCACATGGATCAAGC
TGTACAAAAAGGTGATGAACCAGGACGTGAAGAAGGAGAATCCCTTGCAG
TTTAGGTTCCGTGCCAAATTCTATCCCGAGGATGTGGCCGAGGAGCTGAT
CCAGGACATTACACTGCGTCTGTTCTACCTGCAGGTGAAGAATGCCATAC
TGACCGACGAGATCTATTGTCCGCCAGAGACATCCGTGCTGCTCGCCTCG
TACGCCGTCCAGGCGCGTCATGGTGACCACAATAAGACCACCCACACAGC
CGGCTTTCTGGCCAACGATCGCCTGCTGCCGCAGCGCGTCATCGACCAGC
ACAAGATGTCCAAGGACGAGTGGGAGCAGTCGATTATGACCTGGTGGCAG
GAGCATCGCAGCATGCTGCGCGAGGATGCCATGATGGAGTATCTGAAGAT
CGCCCAAGACCTGGAGATGTACGGCGTTAACTACTTTGAGATCCGCAACA
AGAAGGGCACGGATCTTTGGCTGGGCGTAGACGCACTGGGTCTGAACATT
TACGAGCAGGACGATAGGTTGACGCCGAAAATTGGTTTCCCATGGTCCGA
GATTCGCAACATTTCGTTCTCGGAGAAGAAGTTCATCATCAAGCCGATCG
ACAAGAAGGCTCCGGACTTTATGTTCTTTGCGCCACGTGTCCGCATCAAC
AAGCGCATTCTGGCCCTCTGCATGGGCAACCACGAGCTGTACATGCGTCG
CCGCAAGCCGGACACCATCGATGTGCAGCAGATGAAGGCGCAGGCGCGCG
AGGAGAAGAATGCCAAACAGCAGGAACGTGAGAAGCTGCAGCTGGCGCTG
GCCGCACGCGAACGCGCTGAAAAGAAGCAGCAGGAGTACGAGGATCGGCT
AAAGCAGATGCAGGAGGATATGGAGCGTTCGCAGCGCGATCTGCTTGAGG
CGCAGGACATGATCCGCCGGCTGGAGGAGCAGCTGAAGCAGCTGCAGGCC
GCCAAGGATGAGCTGGAGCTGCGCCAGAAGGAGCTGCAGGCGATGCTGCA
GCGCCTCGAGGAGGCCAAGAATATGGAGGCCGTCGAGAAGCTCAAGCTCG
AGGAGGAGATCATGGCCAAGCAGATGGAGGTGCAGCGCATTCAGGACGAG
GTCAACGCCAAGGATGAGGAGACAAAGCGTCTGCAGGACGAAGTGGAAGA
CGCCCGACGCAAGCAGGCTGAAGCCGCTGCCGCTCTGCTGGCCGCGTCGA
CAACGCCGCAGCATCACCACGTGGCCGAGGATGAGAACGAGAACGAGGAG
GAGCTGACGAACGGCGATGCCGGTGGCGATGTGTCGCGCGACCTGGACAC
CGACGAGCATATCAAGGACCCCATCGAGGACAGACGCACGCTGGCCGAGC
GCAACGAACGCTTGCACGATCAGCTCAAGGCTCTGAAACAAGATTTGGCG
CAGTCTCGCGACGAGACGAAAGAGACGGCAAACGATAAGATTCATCGCGA
GAACGTTCGCCAGGGACGTGACAAGTACAAGACGCTCCGCGAGATTCGTA
AGGGCAACACAAAGCGTCGCGTCGATCAGTTTGAGAACATGAAAGCAAGC
TTTCTAGACCAT
BO03685.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:23:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Moe-RD | 1728 | CG10701-PD | 1..1725 | 17..1741 | 8610 | 99.9 | Plus |
| Moe-RI | 1728 | CG10701-PI | 1..1725 | 17..1741 | 8610 | 99.9 | Plus |
| Moe-RH | 1728 | CG10701-PH | 1..1725 | 17..1741 | 8610 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Moe-RD | 3003 | CG10701-RD | 341..2065 | 17..1741 | 8610 | 99.9 | Plus |
| Moe-RI | 2282 | CG10701-RI | 231..1955 | 17..1741 | 8610 | 99.9 | Plus |
| Moe-RH | 2236 | CG10701-RH | 185..1909 | 17..1741 | 8610 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8875094..8875862 | 978..210 | 3845 | 100 | Minus |
| X | 23542271 | X | 8874511..8874900 | 1367..978 | 1935 | 99.7 | Minus |
| X | 23542271 | X | 8874188..8874403 | 1580..1365 | 1080 | 100 | Minus |
| X | 23542271 | X | 8876571..8876753 | 213..31 | 915 | 100 | Minus |
| X | 23542271 | X | 8873950..8874113 | 1741..1578 | 820 | 100 | Minus |
| X | 23542271 | X | 19691833..19691934 | 958..857 | 195 | 79.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:23:17 has no hits.
BO03685.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:05 Download gff for
BO03685.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moe-RF | 1..1728 | 17..1744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:06:23 Download gff for
BO03685.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moe-RF | 248..1990 | 9..1754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:19 Download gff for
BO03685.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moe-RH | 185..1916 | 17..1746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:06 Download gff for
BO03685.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moe-RF | 248..1990 | 9..1754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:46 Download gff for
BO03685.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moe-RH | 185..1916 | 17..1746 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:46 Download gff for
BO03685.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8873943..8874111 | 1580..1746 | 98 | <- | Minus |
| X | 8874189..8874401 | 1367..1579 | 100 | <- | Minus |
| X | 8874512..8874899 | 979..1366 | 99 | <- | Minus |
| X | 8875094..8875860 | 212..978 | 100 | <- | Minus |
| X | 8876573..8876752 | 32..211 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:19 Download gff for
BO03685.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8767976..8768144 | 1580..1746 | 98 | <- | Minus |
| arm_X | 8768222..8768434 | 1367..1579 | 100 | <- | Minus |
| arm_X | 8768545..8768932 | 979..1366 | 99 | <- | Minus |
| arm_X | 8769127..8769893 | 212..978 | 100 | <- | Minus |
| arm_X | 8770606..8770785 | 32..211 | 100 | <- | Minus |
BO03685.pep Sequence
Translation from 16 to 1762
> BO03685.pep
MSPKALNVRVTTMDAELEFAIQSTTTGKQLFDQVVKTIGLREVWFFGLQY
TDSKGDSTWIKLYKKVMNQDVKKENPLQFRFRAKFYPEDVAEELIQDITL
RLFYLQVKNAILTDEIYCPPETSVLLASYAVQARHGDHNKTTHTAGFLAN
DRLLPQRVIDQHKMSKDEWEQSIMTWWQEHRSMLREDAMMEYLKIAQDLE
MYGVNYFEIRNKKGTDLWLGVDALGLNIYEQDDRLTPKIGFPWSEIRNIS
FSEKKFIIKPIDKKAPDFMFFAPRVRINKRILALCMGNHELYMRRRKPDT
IDVQQMKAQAREEKNAKQQEREKLQLALAARERAEKKQQEYEDRLKQMQE
DMERSQRDLLEAQDMIRRLEEQLKQLQAAKDELELRQKELQAMLQRLEEA
KNMEAVEKLKLEEEIMAKQMEVQRIQDEVNAKDEETKRLQDEVEDARRKQ
AEAAAALLAASTTPQHHHVAEDENENEEELTNGDAGGDVSRDLDTDEHIK
DPIEDRRTLAERNERLHDQLKALKQDLAQSRDETKETANDKIHRENVRQG
RDKYKTLREIRKGNTKRRVDQFENMKASFLDH
BO03685.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Moe-PD | 575 | CG10701-PD | 1..575 | 1..575 | 2948 | 100 | Plus |
| Moe-PI | 575 | CG10701-PI | 1..575 | 1..575 | 2948 | 100 | Plus |
| Moe-PH | 575 | CG10701-PH | 1..575 | 1..575 | 2948 | 100 | Plus |
| Moe-PG | 575 | CG10701-PG | 1..575 | 1..575 | 2948 | 100 | Plus |
| Moe-PF | 575 | CG10701-PF | 1..575 | 1..575 | 2948 | 100 | Plus |
