Clone BO03722 Report

Search the DGRC for BO03722

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:37
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptStam-RA
Protein status:BO03722.pep: validated full length
Sequenced Size:2104

Clone Sequence Records

BO03722.3prime Sequence

664 bp (660 high quality bases) assembled on 2005-12-01

> BO03722.3prime
ATGGTCTAGAAAGCTTGCTTTCCGCTGCTGCTGGTAGATAGGAATGTTGT
TCTTGACAGCATCGTTCTGCATGTGATAGCCGGGCGCCCCAACTGGCGGT
CCGCCAGCCATGGACATGGCGGCCATCTGCTGATGCAGCTGACTAAACTG
ATCGTGTGGTGGTGGGTGTTGTTGCTGCTGCTGCTGTGGGGACATGTAGC
TCTGCGGGTTGACGACGGCCGGCGATCCGTTCGGTCCATAAAGATTTGGT
CCTGGCTGGTATCCCTGTGGTGGCGGTGCCTGCTGATGCTGCGGCGACAT
GTAAGCGTGCGGAGCCGGTGGCTGCTGCGGCTGCTGGATTTGTGTGACTG
CGGGCGGAACTTGGGCGTACTGTGACTGGGGGTCGATGTGGTAGCTGTTC
TGGGGATGCTGTGGGGGCTGCTGGCCTTGCTGCTGTGGCGGCTGTTGAGG
GTGCTGTGGAAGTGGCTGCTGCTGCTGTTGGGTGGTCACGGGAGTCGGCT
GAGTGTAGATTGGCTGGGGCATGGGTGCAGTGCCAGTGGGTTGAGTCAAA
TGGGCTGGCAGCGAGTTCATCTGTGCGGCATGTCCGTTCTGATAGGGCAG
TGGCACCTGCCCCTGCGGTTGACCCAGATAGCCACCAGGAGCTCCAGGTG
CCTGAGATGGAGCA

BO03722.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:52:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG6521-PA 2070 Stam-RA 1425..2067 664..22 3215 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
Stam-RA 2854 CG6521-RA 1724..2370 664..18 3220 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10860977..10861522 563..18 2715 99.8 Minus
2L 23513712 2L 10860810..10860910 664..564 505 100 Minus
Blast to na_te.dros performed 2015-02-11 16:23:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..7013 456..159 241 60.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2343..2514 480..318 224 64 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6704..6885 318..128 167 58.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2512 336..128 154 55.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2528 353..156 149 56.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6736..6937 295..93 146 58.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6751..6923 343..165 132 55.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6790 204..127 129 62.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2467 289..128 126 57.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6749..6811 189..127 126 66.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6856 189..127 124 69.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2380 189..128 123 69.4 Minus
roo 9092 roo DM_ROO 9092bp 1046..1120 204..127 121 65.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2352..2411 186..127 120 66.7 Minus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3291..3351 186..129 118 68.9 Minus
roo 9092 roo DM_ROO 9092bp 1054..1141 214..127 116 59.1 Minus
gypsy11 4428 gypsy11 GYPSY11 4428bp 974..1039 190..123 110 64.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6770..6866 189..92 109 58.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6533..6564 186..155 106 81.2 Minus
X-element 4740 X-element ROXELEMENT 4740bp 1746..1795 184..135 106 68 Minus

BO03722.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:47:07 Download gff for BO03722.3prime
Subject Subject Range Query Range Percent Splice Strand
Stam-PA 1426..2070 19..663 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:52:53 Download gff for BO03722.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6521-PA 1426..2070 19..663 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:49:55 Download gff for BO03722.3prime
Subject Subject Range Query Range Percent Splice Strand
Stam-RA 1725..2376 12..663 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:42:51 Download gff for BO03722.3prime
Subject Subject Range Query Range Percent Splice Strand
Stam-RA 1725..2376 12..663 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:42:51 Download gff for BO03722.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10860811..10860910 564..663 100 -> Minus
2L 10860977..10861528 12..563 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:49:55 Download gff for BO03722.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10860811..10860910 564..663 100 -> Minus
arm_2L 10860977..10861528 12..563 99   Minus

BO03722.5prime Sequence

719 bp (675 high quality bases) assembled on 2005-12-01

> BO03722.5prime
GAAGTTATCAGTCGACATGGGAATCTTTGGGCAGTCGTCGCCATTCGACG
CCGACGTGGAAAAGGCCACCAGCGAAACTAATACCAACGACAACTGGTCT
CTGATTTTGGATGTATGCGACAAGGTAACGACCAATCCCCGCCTGGCCAA
GGATTGCCTGAAGGCGGTGATGCGCCGCATGGGCCACACCGATCCTCATG
TGGTGATGCAGGCGATTACGCTTTTGGACGCCCTGTCCAACAACTGCGGA
AAACCGCTCCATTTGGAGGTGGCTTCACGGGATTTCGAGACGGAGTTCCG
CCGCCTGTTGGCCAAAGCACAGCCAAAGGTTTCACTGAAAATGCGCCAAG
TGCTGAAGAACTGGGCTGAAAACGACTATAAGAACGATCGAGAGCTCGAC
TTGATACCCGCACTCTATGCCAAGCTGCGCCAAGAGGGATATGATTTCAA
GAATCTTGGCGATAAGACTAGCAAGACTGTTGCCGAAAAGGCCGCCGCCC
TGCCCAAAGATCCGAATGTGGTCAGCAGCCAGCAGGAAGAGGATGACATC
GCCAAGGCCATCGAATTGTCGCTGAAGGAGAACAAGGGCAGTCCAAAGAC
TGGGAGTGTAGCAAGTACCGGCACCGCCAGTGCCTATCCCTCATTGTATC
CATCTTTCGCTGGAACCGGCTCGAGTGCACCGAGCGCCGAAGCCAGTTCC
GCACCAGCGCCAGAGCCGA

BO03722.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:52:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG6521-PA 2070 Stam-RA 1..703 17..719 3515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
Stam-RA 2854 CG6521-RA 300..1002 17..719 3515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10859700..10860088 331..719 1930 99.7 Plus
2L 23513712 2L 10859369..10859647 59..337 1395 100 Plus
2L 23513712 2L 10858835..10858877 17..59 215 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:07:01 has no hits.

BO03722.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:47:08 Download gff for BO03722.5prime
Subject Subject Range Query Range Percent Splice Strand
Stam-PA 1..702 17..718 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:52:55 Download gff for BO03722.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6521-PA 1..702 17..718 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:24:07 Download gff for BO03722.5prime
Subject Subject Range Query Range Percent Splice Strand
Stam-RA 292..1001 8..718 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:55:34 Download gff for BO03722.5prime
Subject Subject Range Query Range Percent Splice Strand
Stam-RA 292..1001 8..718 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:55:34 Download gff for BO03722.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10858827..10858877 8..59 92 -> Plus
2L 10859370..10859647 60..337 100 -> Plus
2L 10859707..10860087 338..718 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:24:07 Download gff for BO03722.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10858827..10858877 8..59 92 -> Plus
arm_2L 10859370..10859647 60..337 100 -> Plus
arm_2L 10859707..10860087 338..718 100   Plus

BO03722.complete Sequence

2104 bp assembled on 2006-10-10

GenBank Submission: FJ629586

> BO03722.complete
GAAGTTATCAGTCGACATGGGAATCTTTGGGCAGTCGTCGCCATTCGACG
CCGACGTGGAAAAGGCCACCAGCGAAACTAATACCAACGACAACTGGTCT
CTGATTTTGGATGTATGCGACAAGGTAACGACCAATCCCCGCCTGGCCAA
GGATTGCCTGAAGGCGGTGATGCGCCGCATGGGCCACACCGATCCTCATG
TGGTGATGCAGGCGATTACGCTTTTGGACGCCCTGTCCAACAACTGCGGA
AAACCGCTCCATTTGGAGGTGGCTTCACGGGATTTCGAGACGGAGTTCCG
CCGCCTGTTGGCCAAAGCACAGCCAAAGGTTTCACTGAAAATGCGCCAAG
TGCTGAAGAACTGGGCTGAAAACGACTATAAGAACGATCGAGAGCTCGAC
TTGATACCCGCACTCTATGCCAAGCTGCGCCAAGAGGGATATGATTTCAA
GAATCTTGGCGATAAGACTAGCAAGACTGTTGCCGAAAAGGCCGCCGCCC
TGCCCAAAGATCCGAATGTGGTCAGCAGCCAGCAGGAAGAGGATGACATC
GCCAAGGCCATCGAATTGTCGCTGAAGGAGAACAAGGGCAGTCCAAAGAC
TGGGAGTGTAGCAAGTACCGGCACCGCCAGTGCCTATCCCTCATTGTATC
CATCTTTCGCTGGAACCGGCTCGAGTGCACCGAGCGCCGAAGCCAGTTCC
GCACCAGCGCCAGAGCCGAGAAAGGTTCGAGCTCTGTACGATTTCGAAGC
TGCCGAGGAAAACGAATTGACCTTCTTTGCCGGCGAGATCATTCATGTGC
TGGATGATAGTGATCCAAACTGGTGGAAGGGATACAATCAACGCGGCGAG
GGTCTCTTCCCCTCGAACTTTGTCACTGCCGATCTGTCCGTCGATCCCGA
GCGGCTGGACATCAATCAGCAGCATAAGTCGGCCGCCGCAGCCGGGCAAC
GAGAGTTGGATTCCGCTGCGGCACTGCAGCAAAAGACTGAAGCGGCAGCA
GCTGCCGCCGCAGCTCAGCCTGTGGAGATCGACGAGTCAAAGATCGACCG
GCTGCTGCATTTGCTGCACGAGGCGAATCCCGAAGATCCCTCGCAGGACA
GCGACGAAATGCTGCAGCTGGAGCAGGAGGTCCATCAGATGGGACCGCTG
ATCGATGCCGAGCTGGAACGCGTCGACCGCAAGCACGCTCAACTGACGCA
GTTGTCCAGCGACCTCGTCGACGCCATTAATCTGTACCATACCTTGATGC
GGGATGACCGTGCTGCGGCTGGACATTTTGCCGCCGCTGCTGGCGGCTTT
ATGCCTGGACTTGCTGGTTTCCCGGGTGCCGCTCTGTACGGTGCTCCAGG
TTATCCTGCAGCGGGTGGATTCCCACCGGCCCAAAATTATCCGGGCATGC
ACTCGATGCCATATGGCCCCGTACCAAATCCTCCCACTTCTGCTCCATCT
CAGGCACCTGGAGCTCCTGGTGGCTATCTGGGTCAACCGCAGGGGCAGGT
GCCACTGCCCTATCAGAACGGACATGCCGCACAGATGAACTCGCTGCCAG
CCCATTTGACTCAACCCACTGGCACTGCACCCATGCCCCAGCCAATCTAC
ACTCAGCCGACTCCCGTGACCACCCAACAGCAGCAGCAGCCACTTCCACA
GCACCCTCAACAGCCGCCACAGCAGCAAGGCCAGCAGCCCCCACAGCATC
CCCAGAACAGCTACCACATCGACCCCCAGTCACAGTACGCCCAAGTTCCG
CCCGCAGTCACACAAATCCAGCAGCCGCAGCAGCCACCGGCTCCGCACGC
TTACATGTCGCCGCAGCATCAGCAGGCACCGCCACCACAGGGATACCAGC
CAGGACCAAATCTTTATGGACCGAACGGATCGCCGGCCGTCGTCAACCCG
CAGAGCTACATGTCCCCACAGCAGCAGCAGCAACAACACCCACCACCACA
CGATCAGTTTAGTCAGCTGCATCAGCAGATGGCCGCCATGTCCATGGCTG
GCGGACCGCCAGTTGGGGCGCCCGGCTATCACATGCAGAACGATGCTGTC
AAGAACAACATTCCTATCTACCAGCAGCAGCGGAAAGCAAGCTTTCTAGA
CCAT

BO03722.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:25:02
Subject Length Description Subject Range Query Range Score Percent Strand
Stam-RA 2070 CG6521-PA 1..2067 17..2083 10335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
Stam-RA 2854 CG6521-RA 300..2370 17..2087 10340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10859700..10860910 331..1541 6040 99.9 Plus
2L 23513712 2L 10860977..10861522 1542..2087 2715 99.8 Plus
2L 23513712 2L 10859369..10859647 59..337 1395 100 Plus
2L 23513712 2L 10858835..10858877 17..59 215 100 Plus
Blast to na_te.dros performed 2014-11-27 01:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..7013 1649..1946 241 60.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6704..6885 1787..1977 167 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2512 1769..1977 154 55.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2528 1752..1949 149 56.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6736..6937 1810..2012 146 58.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6751..6923 1762..1940 132 55.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6790 1901..1978 129 62.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2467 1816..1977 126 57.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6749..6811 1916..1978 126 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6856 1916..1978 124 69.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2380 1916..1977 123 69.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2352..2411 1919..1978 120 66.7 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3291..3351 1919..1976 118 68.9 Plus
roo 9092 roo DM_ROO 9092bp 1054..1141 1891..1978 116 59.1 Plus

BO03722.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:55 Download gff for BO03722.complete
Subject Subject Range Query Range Percent Splice Strand
Stam-RA 1..2070 17..2086 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:06:11 Download gff for BO03722.complete
Subject Subject Range Query Range Percent Splice Strand
Stam-RA 300..2384 8..2093 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:21 Download gff for BO03722.complete
Subject Subject Range Query Range Percent Splice Strand
Stam-RA 300..2370 17..2088 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:55 Download gff for BO03722.complete
Subject Subject Range Query Range Percent Splice Strand
Stam-RA 300..2384 8..2093 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:25:01 Download gff for BO03722.complete
Subject Subject Range Query Range Percent Splice Strand
Stam-RA 300..2370 17..2088 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:25:01 Download gff for BO03722.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10859370..10859647 60..337 100 -> Plus
2L 10858835..10858877 17..59 100 -> Plus
2L 10859707..10860910 338..1541 100 -> Plus
2L 10860977..10861522 1542..2088 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:21 Download gff for BO03722.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10858835..10858877 17..59 100 -> Plus
arm_2L 10859370..10859647 60..337 100 -> Plus
arm_2L 10859707..10860910 338..1541 100 -> Plus
arm_2L 10860977..10861522 1542..2088 99   Plus

BO03722.pep Sequence

Translation from 16 to 2104

> BO03722.pep
MGIFGQSSPFDADVEKATSETNTNDNWSLILDVCDKVTTNPRLAKDCLKA
VMRRMGHTDPHVVMQAITLLDALSNNCGKPLHLEVASRDFETEFRRLLAK
AQPKVSLKMRQVLKNWAENDYKNDRELDLIPALYAKLRQEGYDFKNLGDK
TSKTVAEKAAALPKDPNVVSSQQEEDDIAKAIELSLKENKGSPKTGSVAS
TGTASAYPSLYPSFAGTGSSAPSAEASSAPAPEPRKVRALYDFEAAEENE
LTFFAGEIIHVLDDSDPNWWKGYNQRGEGLFPSNFVTADLSVDPERLDIN
QQHKSAAAAGQRELDSAAALQQKTEAAAAAAAAQPVEIDESKIDRLLHLL
HEANPEDPSQDSDEMLQLEQEVHQMGPLIDAELERVDRKHAQLTQLSSDL
VDAINLYHTLMRDDRAAAGHFAAAAGGFMPGLAGFPGAALYGAPGYPAAG
GFPPAQNYPGMHSMPYGPVPNPPTSAPSQAPGAPGGYLGQPQGQVPLPYQ
NGHAAQMNSLPAHLTQPTGTAPMPQPIYTQPTPVTTQQQQQPLPQHPQQP
PQQQGQQPPQHPQNSYHIDPQSQYAQVPPAVTQIQQPQQPPAPHAYMSPQ
HQQAPPPQGYQPGPNLYGPNGSPAVVNPQSYMSPQQQQQQHPPPHDQFSQ
LHQQMAAMSMAGGPPVGAPGYHMQNDAVKNNIPIYQQQRKASFLDH

BO03722.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
Stam-PA 689 CG6521-PA 1..689 1..689 3657 100 Plus
CG10555-PB 926 CG10555-PB 466..660 444..668 223 33.8 Plus
CG10555-PA 926 CG10555-PA 466..660 444..668 223 33.8 Plus
osa-PE 2555 CG7467-PE 1146..1436 430..669 196 29.3 Plus
osa-PC 2556 CG7467-PC 1147..1437 430..669 196 29.3 Plus
osa-PE 2555 CG7467-PE 18..356 422..669 190 28.5 Plus
osa-PE 2555 CG7467-PE 69..359 441..667 190 30.7 Plus
osa-PE 2555 CG7467-PE 185..459 444..671 187 29.9 Plus
CG10555-PB 926 CG10555-PB 230..463 450..692 186 31.4 Plus
CG10555-PA 926 CG10555-PA 230..463 450..692 186 31.4 Plus
CG10555-PB 926 CG10555-PB 640..922 407..674 174 29.9 Plus
CG10555-PA 926 CG10555-PA 640..922 407..674 174 29.9 Plus
CG10555-PB 926 CG10555-PB 501..751 416..644 172 29.4 Plus
CG10555-PA 926 CG10555-PA 501..751 416..644 172 29.4 Plus
osa-PE 2555 CG7467-PE 1355..1632 444..690 167 27 Plus