Clone Sequence Records
BO03734.3prime Sequence
805 bp (716 high quality bases) assembled on 2005-12-01
> BO03734.3prime
ATGGTCTAGAAAGCTTGCTCTCCAGGTGGCGTATTGGTATTGCAGATGCT
GCTGCTCCATCAGATGCTGCTGCTGCTGCTGATGCTGATGCTGTTGCGAA
CTGTTGTCGGAGAAGTAGCTCAGCTCGAAGTTGTGACTCAGATCGCTGTA
GGTCGTCTGTGAGGGCGATGTTTCGTTCACAATCGAGGCATTTCCGGTGG
ACAGCTGCCTTTCGCTCTCCGAACTGCTCGAGCAGCTATTCGAATTGGCC
GAGAATGGGCGTATCATCGAGGTGGCCACATCCACCGTCGCATCGTAGTC
ATAGTAATAGTGATTGTTGTTATTGTAGTACAGGTTGCCGGTGGTCGTGT
CCGGATACTGCATCTCCGTGGAGTAAACGCCGGAGGACGAGGCCGACGCA
CTGGATCCACCGCCCGCACTTGAGGCGGTGCCACCGCCCACACTGCTGCT
CGAGCTCACCACCAGGTCGTTCAAGGGCGGATAAAGCTGCGTGTAACTCA
GGCTATCGTGATCCATGCTGCCGGACTGCTGCTGCTGTTGCACATGATGG
TGGTGCCACACGCCGTTGTTATTGTTGCTACTACTACTACTATTATTCGT
TGGGGGCACGGGCGTTACGGCCGGCTGCAGCGGCAGCTCTGGCTCGAAAT
ACGGATCCAGCTTGGGACTTGCACTGAGGGCCAGACTAACTGGCGTACCC
GGACCCACCGGCTGACCCGTTGCTCCGGCGCACTGCGGCTGCACCACCAC
CGACTGCTGGGGCACCCCCACCACCTGGGCCTGCACCGCTTGAGCCACAT
GTGCC
BO03734.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:52:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7771-PA | 2067 | sim-RA | 1281..2064 | 805..22 | 3895 | 99.8 | Minus |
CG7771-PB | 1995 | sim-RB | 1209..1992 | 805..22 | 3895 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:35:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sim-RD | 3186 | CG7771-RD | 1742..2525 | 805..22 | 3905 | 99.9 | Minus |
sim-RC | 2882 | CG7771-RC | 1438..2221 | 805..22 | 3905 | 99.9 | Minus |
sim-RB | 3162 | CG7771-RB | 1718..2501 | 805..22 | 3905 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:35:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13076680..13077463 | 805..22 | 3905 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-12 23:35:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Stalker | 7256 | Stalker STALKER 7256bp | 2758..2820 | 337..273 | 112 | 67.7 | Minus |
BO03734.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:47:23 Download gff for
BO03734.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7771-PB | 1209..1995 | 19..805 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:53:14 Download gff for
BO03734.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7771-PB | 1209..1995 | 19..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:26:34 Download gff for
BO03734.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sim-RB | 1714..2500 | 19..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:32:58 Download gff for
BO03734.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sim-RB | 1718..2504 | 19..805 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:32:58 Download gff for
BO03734.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13076680..13077466 | 19..805 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:26:34 Download gff for
BO03734.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8902402..8903188 | 19..805 | 99 | | Minus |
BO03734.5prime Sequence
762 bp (667 high quality bases) assembled on 2005-12-01
> BO03734.5prime
GAAGTTATCAGTCGACATGACTAACCATCGGCGAGTGCGCAAGGATTGCT
ATGAGAGCAGATTGCATGATATAGCCAAAACGTGTGCCATGAAGGAGAAA
AGCAAAAATGCGGCACGCACGCGACGTGAAAAGGAAAACACGGAATTCTG
TGAATTGGCCAAATTACTGCCGCTGCCGGCGGCGATTACTTCGCAACTGG
ACAAGGCCTCCGTCATCCGGCTGACCACGTCGTATTTGAAAATGCGCCAA
GTCTTTCCCGATGGTCTTGGCGAAGCCTGGGGCTCATCGCCTGCCATGCA
ACGCGGCGCCACCATCAAGGAGCTGGGCTCCCATCTGCTGCAGACGCTGG
ACGGATTCATCTTCGTGGTGGCTCCGGATGGCAAAATCATGTACATCTCG
GAAACGGCCTCCGTGCATTTGGGCCTCAGTCAGGTTGAGCTGACGGGCAA
CTCGATATTCGAGTACATACACAACTACGATCAGGACGAGATGAATGCCA
TTTTGTCGCTGCATCCGCACATCAACCAGCATCCACTCGCCCAGACGCAC
ACGCCCATCGGCAGTCCCAATGGCGTCCAGCATCCATCCGCCTACGACCA
CGATCGCGGATCGCACACCATCGAGATCGAGAAGACCTTCTTCCTGCGCA
TGAAGTGCGTCCTGGCCAAAAGGAACGCGGGCCTCACCACCTCCCGGATT
TAAGGTGATACACTGCTCCGGCTATCTGAAGGCTCGCATCTATCCCGATC
GCGGGGATGGAC
BO03734.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:52:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7771-PA | 2067 | sim-RA | 1..678 | 17..694 | 3390 | 100 | Plus |
CG7771-PB | 1995 | sim-RB | 1..606 | 89..694 | 3030 | 100 | Plus |
CG7771-PA | 2067 | sim-RA | 677..745 | 694..762 | 345 | 100 | Plus |
CG7771-PB | 1995 | sim-RB | 605..673 | 694..762 | 345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:18:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sim-RA | 2825 | CG7771-RA | 101..845 | 17..762 | 3705 | 99.9 | Plus |
sim-RB | 3162 | CG7771-RB | 489..1182 | 68..762 | 3450 | 99.9 | Plus |
sim-RC | 2882 | CG7771-RC | 210..902 | 69..762 | 3445 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:18:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13072661..13072858 | 68..265 | 990 | 100 | Plus |
3R | 32079331 | 3R | 13074079..13074251 | 263..435 | 865 | 100 | Plus |
3R | 32079331 | 3R | 13074837..13075006 | 536..706 | 805 | 99.4 | Plus |
3R | 32079331 | 3R | 13074568..13074672 | 431..535 | 525 | 100 | Plus |
3R | 32079331 | 3R | 13075069..13075134 | 697..762 | 315 | 98.5 | Plus |
3R | 32079331 | 3R | 13072499..13072550 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:18:45 has no hits.
BO03734.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:47:24 Download gff for
BO03734.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sim-PA | 1..745 | 17..762 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:53:16 Download gff for
BO03734.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7771-PA | 1..745 | 17..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:45:46 Download gff for
BO03734.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sim-RA | 101..845 | 17..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:39:40 Download gff for
BO03734.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sim-RA | 101..845 | 17..762 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:39:40 Download gff for
BO03734.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13072500..13072550 | 18..68 | 100 | -> | Plus |
3R | 13072662..13072856 | 69..263 | 100 | -> | Plus |
3R | 13074080..13074249 | 264..433 | 100 | -> | Plus |
3R | 13074571..13074672 | 434..535 | 100 | -> | Plus |
3R | 13074837..13075004 | 536..704 | 99 | -> | Plus |
3R | 13075077..13075134 | 705..762 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:45:46 Download gff for
BO03734.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8898222..8898272 | 18..68 | 100 | -> | Plus |
arm_3R | 8898384..8898578 | 69..263 | 100 | -> | Plus |
arm_3R | 8899802..8899971 | 264..433 | 100 | -> | Plus |
arm_3R | 8900293..8900394 | 434..535 | 100 | -> | Plus |
arm_3R | 8900559..8900726 | 536..704 | 99 | -> | Plus |
arm_3R | 8900799..8900856 | 705..762 | 100 | | Plus |
BO03734.complete Sequence
2101 bp assembled on 2006-10-10
GenBank Submission: FJ629587
> BO03734.complete
GAAGTTATCAGTCGACATGACTAACCATCGGCGAGTGCGCAAGGATTGCT
ATGAGAGCAGATTGCATGATATAGCCAAAACGTGTGCCATGAAGGAGAAA
AGCAAAAATGCGGCACGCACGCGACGTGAAAAGGAAAACACGGAATTCTG
TGAATTGGCCAAATTACTGCCGCTGCCGGCGGCGATTACTTCGCAACTGG
ACAAGGCCTCCGTCATCCGGCTGACCACGTCGTATTTGAAAATGCGCCAA
GTCTTTCCCGATGGTCTTGGCGAAGCCTGGGGCTCATCGCCTGCCATGCA
ACGCGGCGCCACCATCAAGGAGCTGGGCTCCCATCTGCTGCAGACGCTGG
ACGGATTCATCTTCGTGGTGGCTCCGGATGGCAAAATCATGTACATCTCG
GAAACGGCCTCCGTGCATTTGGGCCTCAGTCAGGTTGAGCTGACGGGCAA
CTCGATATTCGAGTACATACACAACTACGATCAGGACGAGATGAATGCCA
TTTTGTCGCTGCATCCGCACATCAACCAGCATCCACTCGCCCAGACGCAC
ACGCCCATCGGCAGTCCCAATGGCGTCCAGCATCCATCCGCCTACGACCA
CGATCGCGGATCGCACACCATCGAGATCGAGAAGACCTTCTTCCTGCGCA
TGAAGTGCGTCCTGGCCAAAAGGAACGCGGGCCTCACCACCTCCGGATTT
AAGGTGATACACTGCTCCGGCTATCTGAAGGCTCGCATCTATCCCGATCG
CGGGGATGGACAGGGCAGCCTCATCCAGAATCTCGGCCTGGTGGCCGTCG
GTCACTCGCTGCCTTCATCCGCCATCACGGAAATCAAGCTGCACCAGAAT
ATGTTCATGTTCCGGGCCAAGCTGGACATGAAGCTCATCTTCTTCGATGC
ACGCGTATCGCAGCTAACAGGATACGAGCCGCAGGACCTCATCGAGAAGA
CCCTGTATCAGTATATCCACGCCGCGGACATCATGGCCATGCGCTGCTCT
CATCAAATCCTGCTGTACAAAGGACAAGTGACCACCAAGTACTACCGCTT
CCTCACCAAAGGCGGCGGCTGGGTGTGGGTGCAGTCGTACGCGACACTGG
TGCACAATTCGCGATCCTCGCGAGAAGTGTTCATCGTGAGCGTGAACTAT
GTGCTGAGCGAACGAGAGGTGAAAGACTTGGTGCTGAACGAGATTCAGAC
GGGCGTTGTGAAGCGGGAGCCCATATCGCCGGCGGCTCAAGCGGCACAGG
CAGCTCAAGCGGCCCAAGCGGCCCAAGCGGCACAGGCGGCACAGGCGGCA
CATGTGGCTCAAGCGGTGCAGGCCCAGGTGGTGGTGGTGCCCCAGCAGTC
GGTGGTGGTGCAGCCGCAGTGCGCCGGAGCAACGGGTCAGCCGGTGGGTC
CGGGTACGCCAGTTAGTCTGGCCCTCAGTGCAAGTCCCAAGCTGGATCCG
TATTTCGAGCCAGAGCTGCCGCTGCAGCCGGCCGTAACGCCCGTGCCCCC
AACGAATAATAGTAGTAGTAGTAGCAACAATAACAACGGCGTGTGGCACC
ACCATCATGTGCAACAGCAGCAGCAGTCCGGCAGCATGGATCACGATAGC
CTGAGTTACACGCAGCTTTATCCGCCCTTGAACGACCTGGTGGTGAGCTC
GAGCAGCAGTGTGGGCGGTGGCACCGCCTCAAGTGCGGGCGGTGGATCCA
GTGCGTCGGCCTCGTCCTCCGGCGTTTACTCCACGGAGATGCAGTATCCG
GACACGACCACCGGCAACCTGTACTACAATAACAACAATCACTATTACTA
TGACTACGATGCGACGGTGGATGTGGCCACCTCGATGATACGCCCATTCT
CGGCCAATTCGAATAGCTGCTCGAGCAGTTCGGAGAGCGAAAGGCAGCTG
TCCACCGGAAATGCCTCGATTGTGAACGAAACATCGCCCTCACAGACGAC
CTACAGCGATCTGAGTCACAACTTCGAGCTGAGCTACTTCTCCGACAACA
GTTCGCAACAGCATCAGCATCAGCAGCAGCAGCAGCATCTGATGGAGCAG
CAGCATCTGCAATACCAATACGCCACCTGGAGAGCAAGCTTTCTAGACCA
T
BO03734.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:25:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sim-RA | 2067 | CG7771-PA | 1..2064 | 17..2080 | 10320 | 100 | Plus |
sim-RC | 2028 | CG7771-PC | 14..2025 | 69..2080 | 10060 | 100 | Plus |
sim-RB | 1995 | CG7771-PB | 1..1992 | 89..2080 | 9960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:25:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sim-RA | 2825 | CG7771-RA | 101..2164 | 17..2080 | 10320 | 100 | Plus |
sim-RB | 3162 | CG7771-RB | 489..2501 | 68..2080 | 10065 | 100 | Plus |
sim-RC | 2882 | CG7771-RC | 210..2221 | 69..2080 | 10060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:25:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13076394..13077463 | 1011..2080 | 5350 | 100 | Plus |
3R | 32079331 | 3R | 13075069..13075276 | 696..903 | 1025 | 99.5 | Plus |
3R | 32079331 | 3R | 13072661..13072858 | 68..265 | 990 | 100 | Plus |
3R | 32079331 | 3R | 13074079..13074251 | 263..435 | 865 | 100 | Plus |
3R | 32079331 | 3R | 13074837..13075006 | 536..705 | 850 | 100 | Plus |
3R | 32079331 | 3R | 13076198..13076305 | 903..1010 | 540 | 100 | Plus |
3R | 32079331 | 3R | 13074568..13074672 | 431..535 | 525 | 100 | Plus |
3R | 32079331 | 3R | 13072499..13072550 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:25:38 has no hits.
BO03734.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:36 Download gff for
BO03734.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sim-RA | 1..2067 | 17..2083 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:43 Download gff for
BO03734.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sim-RA | 98..2164 | 17..2083 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:00 Download gff for
BO03734.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sim-RA | 101..2169 | 17..2085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:36 Download gff for
BO03734.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sim-RA | 98..2164 | 17..2083 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:26 Download gff for
BO03734.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sim-RA | 101..2169 | 17..2085 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:26 Download gff for
BO03734.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13072499..13072550 | 17..68 | 100 | -> | Plus |
3R | 13072662..13072856 | 69..263 | 100 | -> | Plus |
3R | 13074080..13074249 | 264..433 | 100 | -> | Plus |
3R | 13074571..13074672 | 434..535 | 100 | -> | Plus |
3R | 13074837..13075004 | 536..703 | 100 | -> | Plus |
3R | 13075077..13075276 | 704..903 | 100 | -> | Plus |
3R | 13076199..13076305 | 904..1010 | 100 | -> | Plus |
3R | 13076394..13077468 | 1011..2085 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:00 Download gff for
BO03734.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8898221..8898272 | 17..68 | 100 | -> | Plus |
arm_3R | 8898384..8898578 | 69..263 | 100 | -> | Plus |
arm_3R | 8899802..8899971 | 264..433 | 100 | -> | Plus |
arm_3R | 8900293..8900394 | 434..535 | 100 | -> | Plus |
arm_3R | 8900559..8900726 | 536..703 | 100 | -> | Plus |
arm_3R | 8900799..8900998 | 704..903 | 100 | -> | Plus |
arm_3R | 8901921..8902027 | 904..1010 | 100 | -> | Plus |
arm_3R | 8902116..8903190 | 1011..2085 | 99 | | Plus |
BO03734.pep Sequence
Translation from 16 to 2101
> BO03734.pep
MTNHRRVRKDCYESRLHDIAKTCAMKEKSKNAARTRREKENTEFCELAKL
LPLPAAITSQLDKASVIRLTTSYLKMRQVFPDGLGEAWGSSPAMQRGATI
KELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVELTGNSIFEY
IHNYDQDEMNAILSLHPHINQHPLAQTHTPIGSPNGVQHPSAYDHDRGSH
TIEIEKTFFLRMKCVLAKRNAGLTTSGFKVIHCSGYLKARIYPDRGDGQG
SLIQNLGLVAVGHSLPSSAITEIKLHQNMFMFRAKLDMKLIFFDARVSQL
TGYEPQDLIEKTLYQYIHAADIMAMRCSHQILLYKGQVTTKYYRFLTKGG
GWVWVQSYATLVHNSRSSREVFIVSVNYVLSEREVKDLVLNEIQTGVVKR
EPISPAAQAAQAAQAAQAAQAAQAAQAAHVAQAVQAQVVVVPQQSVVVQP
QCAGATGQPVGPGTPVSLALSASPKLDPYFEPELPLQPAVTPVPPTNNSS
SSSNNNNGVWHHHHVQQQQQSGSMDHDSLSYTQLYPPLNDLVVSSSSSVG
GGTASSAGGGSSASASSSGVYSTEMQYPDTTTGNLYYNNNNHYYYDYDAT
VDVATSMIRPFSANSNSCSSSSESERQLSTGNASIVNETSPSQTTYSDLS
HNFELSYFSDNSSQQHQHQQQQQHLMEQQHLQYQYATWRASFLDH
BO03734.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sim-PA | 688 | CG7771-PA | 1..688 | 1..688 | 3570 | 100 | Plus |
sim-PC | 675 | CG7771-PC | 5..675 | 18..688 | 3469 | 99.9 | Plus |
sim-PB | 664 | CG7771-PB | 1..664 | 25..688 | 3437 | 100 | Plus |
sim-PD | 672 | CG7771-PD | 1..672 | 25..688 | 3418 | 98.8 | Plus |
trh-PG | 923 | CG42865-PG | 88..481 | 26..391 | 671 | 41 | Plus |