Clone BO03734 Report

Search the DGRC for BO03734

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:37
Well:34
Vector:pDNR-Dual
Associated Gene/Transcriptsim-RA
Protein status:BO03734.pep: validated full length
Sequenced Size:2101

Clone Sequence Records

BO03734.3prime Sequence

805 bp (716 high quality bases) assembled on 2005-12-01

> BO03734.3prime
ATGGTCTAGAAAGCTTGCTCTCCAGGTGGCGTATTGGTATTGCAGATGCT
GCTGCTCCATCAGATGCTGCTGCTGCTGCTGATGCTGATGCTGTTGCGAA
CTGTTGTCGGAGAAGTAGCTCAGCTCGAAGTTGTGACTCAGATCGCTGTA
GGTCGTCTGTGAGGGCGATGTTTCGTTCACAATCGAGGCATTTCCGGTGG
ACAGCTGCCTTTCGCTCTCCGAACTGCTCGAGCAGCTATTCGAATTGGCC
GAGAATGGGCGTATCATCGAGGTGGCCACATCCACCGTCGCATCGTAGTC
ATAGTAATAGTGATTGTTGTTATTGTAGTACAGGTTGCCGGTGGTCGTGT
CCGGATACTGCATCTCCGTGGAGTAAACGCCGGAGGACGAGGCCGACGCA
CTGGATCCACCGCCCGCACTTGAGGCGGTGCCACCGCCCACACTGCTGCT
CGAGCTCACCACCAGGTCGTTCAAGGGCGGATAAAGCTGCGTGTAACTCA
GGCTATCGTGATCCATGCTGCCGGACTGCTGCTGCTGTTGCACATGATGG
TGGTGCCACACGCCGTTGTTATTGTTGCTACTACTACTACTATTATTCGT
TGGGGGCACGGGCGTTACGGCCGGCTGCAGCGGCAGCTCTGGCTCGAAAT
ACGGATCCAGCTTGGGACTTGCACTGAGGGCCAGACTAACTGGCGTACCC
GGACCCACCGGCTGACCCGTTGCTCCGGCGCACTGCGGCTGCACCACCAC
CGACTGCTGGGGCACCCCCACCACCTGGGCCTGCACCGCTTGAGCCACAT
GTGCC

BO03734.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:52:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7771-PA 2067 sim-RA 1281..2064 805..22 3895 99.8 Minus
CG7771-PB 1995 sim-RB 1209..1992 805..22 3895 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:35:34
Subject Length Description Subject Range Query Range Score Percent Strand
sim-RD 3186 CG7771-RD 1742..2525 805..22 3905 99.9 Minus
sim-RC 2882 CG7771-RC 1438..2221 805..22 3905 99.9 Minus
sim-RB 3162 CG7771-RB 1718..2501 805..22 3905 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:35:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13076680..13077463 805..22 3905 99.9 Minus
Blast to na_te.dros performed 2015-02-12 23:35:32
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker 7256 Stalker STALKER 7256bp 2758..2820 337..273 112 67.7 Minus

BO03734.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:47:23 Download gff for BO03734.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7771-PB 1209..1995 19..805 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:53:14 Download gff for BO03734.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7771-PB 1209..1995 19..805 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:26:34 Download gff for BO03734.3prime
Subject Subject Range Query Range Percent Splice Strand
sim-RB 1714..2500 19..805 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:32:58 Download gff for BO03734.3prime
Subject Subject Range Query Range Percent Splice Strand
sim-RB 1718..2504 19..805 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:32:58 Download gff for BO03734.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13076680..13077466 19..805 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:26:34 Download gff for BO03734.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8902402..8903188 19..805 99   Minus

BO03734.5prime Sequence

762 bp (667 high quality bases) assembled on 2005-12-01

> BO03734.5prime
GAAGTTATCAGTCGACATGACTAACCATCGGCGAGTGCGCAAGGATTGCT
ATGAGAGCAGATTGCATGATATAGCCAAAACGTGTGCCATGAAGGAGAAA
AGCAAAAATGCGGCACGCACGCGACGTGAAAAGGAAAACACGGAATTCTG
TGAATTGGCCAAATTACTGCCGCTGCCGGCGGCGATTACTTCGCAACTGG
ACAAGGCCTCCGTCATCCGGCTGACCACGTCGTATTTGAAAATGCGCCAA
GTCTTTCCCGATGGTCTTGGCGAAGCCTGGGGCTCATCGCCTGCCATGCA
ACGCGGCGCCACCATCAAGGAGCTGGGCTCCCATCTGCTGCAGACGCTGG
ACGGATTCATCTTCGTGGTGGCTCCGGATGGCAAAATCATGTACATCTCG
GAAACGGCCTCCGTGCATTTGGGCCTCAGTCAGGTTGAGCTGACGGGCAA
CTCGATATTCGAGTACATACACAACTACGATCAGGACGAGATGAATGCCA
TTTTGTCGCTGCATCCGCACATCAACCAGCATCCACTCGCCCAGACGCAC
ACGCCCATCGGCAGTCCCAATGGCGTCCAGCATCCATCCGCCTACGACCA
CGATCGCGGATCGCACACCATCGAGATCGAGAAGACCTTCTTCCTGCGCA
TGAAGTGCGTCCTGGCCAAAAGGAACGCGGGCCTCACCACCTCCCGGATT
TAAGGTGATACACTGCTCCGGCTATCTGAAGGCTCGCATCTATCCCGATC
GCGGGGATGGAC

BO03734.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:52:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7771-PA 2067 sim-RA 1..678 17..694 3390 100 Plus
CG7771-PB 1995 sim-RB 1..606 89..694 3030 100 Plus
CG7771-PA 2067 sim-RA 677..745 694..762 345 100 Plus
CG7771-PB 1995 sim-RB 605..673 694..762 345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:18:46
Subject Length Description Subject Range Query Range Score Percent Strand
sim-RA 2825 CG7771-RA 101..845 17..762 3705 99.9 Plus
sim-RB 3162 CG7771-RB 489..1182 68..762 3450 99.9 Plus
sim-RC 2882 CG7771-RC 210..902 69..762 3445 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:18:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13072661..13072858 68..265 990 100 Plus
3R 32079331 3R 13074079..13074251 263..435 865 100 Plus
3R 32079331 3R 13074837..13075006 536..706 805 99.4 Plus
3R 32079331 3R 13074568..13074672 431..535 525 100 Plus
3R 32079331 3R 13075069..13075134 697..762 315 98.5 Plus
3R 32079331 3R 13072499..13072550 17..68 260 100 Plus
Blast to na_te.dros performed on 2015-02-11 02:18:45 has no hits.

BO03734.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:47:24 Download gff for BO03734.5prime
Subject Subject Range Query Range Percent Splice Strand
sim-PA 1..745 17..762 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:53:16 Download gff for BO03734.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7771-PA 1..745 17..762 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:45:46 Download gff for BO03734.5prime
Subject Subject Range Query Range Percent Splice Strand
sim-RA 101..845 17..762 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:39:40 Download gff for BO03734.5prime
Subject Subject Range Query Range Percent Splice Strand
sim-RA 101..845 17..762 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:39:40 Download gff for BO03734.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13072500..13072550 18..68 100 -> Plus
3R 13072662..13072856 69..263 100 -> Plus
3R 13074080..13074249 264..433 100 -> Plus
3R 13074571..13074672 434..535 100 -> Plus
3R 13074837..13075004 536..704 99 -> Plus
3R 13075077..13075134 705..762 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:45:46 Download gff for BO03734.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8898222..8898272 18..68 100 -> Plus
arm_3R 8898384..8898578 69..263 100 -> Plus
arm_3R 8899802..8899971 264..433 100 -> Plus
arm_3R 8900293..8900394 434..535 100 -> Plus
arm_3R 8900559..8900726 536..704 99 -> Plus
arm_3R 8900799..8900856 705..762 100   Plus

BO03734.complete Sequence

2101 bp assembled on 2006-10-10

GenBank Submission: FJ629587

> BO03734.complete
GAAGTTATCAGTCGACATGACTAACCATCGGCGAGTGCGCAAGGATTGCT
ATGAGAGCAGATTGCATGATATAGCCAAAACGTGTGCCATGAAGGAGAAA
AGCAAAAATGCGGCACGCACGCGACGTGAAAAGGAAAACACGGAATTCTG
TGAATTGGCCAAATTACTGCCGCTGCCGGCGGCGATTACTTCGCAACTGG
ACAAGGCCTCCGTCATCCGGCTGACCACGTCGTATTTGAAAATGCGCCAA
GTCTTTCCCGATGGTCTTGGCGAAGCCTGGGGCTCATCGCCTGCCATGCA
ACGCGGCGCCACCATCAAGGAGCTGGGCTCCCATCTGCTGCAGACGCTGG
ACGGATTCATCTTCGTGGTGGCTCCGGATGGCAAAATCATGTACATCTCG
GAAACGGCCTCCGTGCATTTGGGCCTCAGTCAGGTTGAGCTGACGGGCAA
CTCGATATTCGAGTACATACACAACTACGATCAGGACGAGATGAATGCCA
TTTTGTCGCTGCATCCGCACATCAACCAGCATCCACTCGCCCAGACGCAC
ACGCCCATCGGCAGTCCCAATGGCGTCCAGCATCCATCCGCCTACGACCA
CGATCGCGGATCGCACACCATCGAGATCGAGAAGACCTTCTTCCTGCGCA
TGAAGTGCGTCCTGGCCAAAAGGAACGCGGGCCTCACCACCTCCGGATTT
AAGGTGATACACTGCTCCGGCTATCTGAAGGCTCGCATCTATCCCGATCG
CGGGGATGGACAGGGCAGCCTCATCCAGAATCTCGGCCTGGTGGCCGTCG
GTCACTCGCTGCCTTCATCCGCCATCACGGAAATCAAGCTGCACCAGAAT
ATGTTCATGTTCCGGGCCAAGCTGGACATGAAGCTCATCTTCTTCGATGC
ACGCGTATCGCAGCTAACAGGATACGAGCCGCAGGACCTCATCGAGAAGA
CCCTGTATCAGTATATCCACGCCGCGGACATCATGGCCATGCGCTGCTCT
CATCAAATCCTGCTGTACAAAGGACAAGTGACCACCAAGTACTACCGCTT
CCTCACCAAAGGCGGCGGCTGGGTGTGGGTGCAGTCGTACGCGACACTGG
TGCACAATTCGCGATCCTCGCGAGAAGTGTTCATCGTGAGCGTGAACTAT
GTGCTGAGCGAACGAGAGGTGAAAGACTTGGTGCTGAACGAGATTCAGAC
GGGCGTTGTGAAGCGGGAGCCCATATCGCCGGCGGCTCAAGCGGCACAGG
CAGCTCAAGCGGCCCAAGCGGCCCAAGCGGCACAGGCGGCACAGGCGGCA
CATGTGGCTCAAGCGGTGCAGGCCCAGGTGGTGGTGGTGCCCCAGCAGTC
GGTGGTGGTGCAGCCGCAGTGCGCCGGAGCAACGGGTCAGCCGGTGGGTC
CGGGTACGCCAGTTAGTCTGGCCCTCAGTGCAAGTCCCAAGCTGGATCCG
TATTTCGAGCCAGAGCTGCCGCTGCAGCCGGCCGTAACGCCCGTGCCCCC
AACGAATAATAGTAGTAGTAGTAGCAACAATAACAACGGCGTGTGGCACC
ACCATCATGTGCAACAGCAGCAGCAGTCCGGCAGCATGGATCACGATAGC
CTGAGTTACACGCAGCTTTATCCGCCCTTGAACGACCTGGTGGTGAGCTC
GAGCAGCAGTGTGGGCGGTGGCACCGCCTCAAGTGCGGGCGGTGGATCCA
GTGCGTCGGCCTCGTCCTCCGGCGTTTACTCCACGGAGATGCAGTATCCG
GACACGACCACCGGCAACCTGTACTACAATAACAACAATCACTATTACTA
TGACTACGATGCGACGGTGGATGTGGCCACCTCGATGATACGCCCATTCT
CGGCCAATTCGAATAGCTGCTCGAGCAGTTCGGAGAGCGAAAGGCAGCTG
TCCACCGGAAATGCCTCGATTGTGAACGAAACATCGCCCTCACAGACGAC
CTACAGCGATCTGAGTCACAACTTCGAGCTGAGCTACTTCTCCGACAACA
GTTCGCAACAGCATCAGCATCAGCAGCAGCAGCAGCATCTGATGGAGCAG
CAGCATCTGCAATACCAATACGCCACCTGGAGAGCAAGCTTTCTAGACCA
T

BO03734.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
sim-RA 2067 CG7771-PA 1..2064 17..2080 10320 100 Plus
sim-RC 2028 CG7771-PC 14..2025 69..2080 10060 100 Plus
sim-RB 1995 CG7771-PB 1..1992 89..2080 9960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
sim-RA 2825 CG7771-RA 101..2164 17..2080 10320 100 Plus
sim-RB 3162 CG7771-RB 489..2501 68..2080 10065 100 Plus
sim-RC 2882 CG7771-RC 210..2221 69..2080 10060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13076394..13077463 1011..2080 5350 100 Plus
3R 32079331 3R 13075069..13075276 696..903 1025 99.5 Plus
3R 32079331 3R 13072661..13072858 68..265 990 100 Plus
3R 32079331 3R 13074079..13074251 263..435 865 100 Plus
3R 32079331 3R 13074837..13075006 536..705 850 100 Plus
3R 32079331 3R 13076198..13076305 903..1010 540 100 Plus
3R 32079331 3R 13074568..13074672 431..535 525 100 Plus
3R 32079331 3R 13072499..13072550 17..68 260 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:25:38 has no hits.

BO03734.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:36 Download gff for BO03734.complete
Subject Subject Range Query Range Percent Splice Strand
sim-RA 1..2067 17..2083 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:43 Download gff for BO03734.complete
Subject Subject Range Query Range Percent Splice Strand
sim-RA 98..2164 17..2083 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:00 Download gff for BO03734.complete
Subject Subject Range Query Range Percent Splice Strand
sim-RA 101..2169 17..2085 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:36 Download gff for BO03734.complete
Subject Subject Range Query Range Percent Splice Strand
sim-RA 98..2164 17..2083 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:26 Download gff for BO03734.complete
Subject Subject Range Query Range Percent Splice Strand
sim-RA 101..2169 17..2085 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:26 Download gff for BO03734.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13072499..13072550 17..68 100 -> Plus
3R 13072662..13072856 69..263 100 -> Plus
3R 13074080..13074249 264..433 100 -> Plus
3R 13074571..13074672 434..535 100 -> Plus
3R 13074837..13075004 536..703 100 -> Plus
3R 13075077..13075276 704..903 100 -> Plus
3R 13076199..13076305 904..1010 100 -> Plus
3R 13076394..13077468 1011..2085 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:00 Download gff for BO03734.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8898221..8898272 17..68 100 -> Plus
arm_3R 8898384..8898578 69..263 100 -> Plus
arm_3R 8899802..8899971 264..433 100 -> Plus
arm_3R 8900293..8900394 434..535 100 -> Plus
arm_3R 8900559..8900726 536..703 100 -> Plus
arm_3R 8900799..8900998 704..903 100 -> Plus
arm_3R 8901921..8902027 904..1010 100 -> Plus
arm_3R 8902116..8903190 1011..2085 99   Plus

BO03734.pep Sequence

Translation from 16 to 2101

> BO03734.pep
MTNHRRVRKDCYESRLHDIAKTCAMKEKSKNAARTRREKENTEFCELAKL
LPLPAAITSQLDKASVIRLTTSYLKMRQVFPDGLGEAWGSSPAMQRGATI
KELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVELTGNSIFEY
IHNYDQDEMNAILSLHPHINQHPLAQTHTPIGSPNGVQHPSAYDHDRGSH
TIEIEKTFFLRMKCVLAKRNAGLTTSGFKVIHCSGYLKARIYPDRGDGQG
SLIQNLGLVAVGHSLPSSAITEIKLHQNMFMFRAKLDMKLIFFDARVSQL
TGYEPQDLIEKTLYQYIHAADIMAMRCSHQILLYKGQVTTKYYRFLTKGG
GWVWVQSYATLVHNSRSSREVFIVSVNYVLSEREVKDLVLNEIQTGVVKR
EPISPAAQAAQAAQAAQAAQAAQAAQAAHVAQAVQAQVVVVPQQSVVVQP
QCAGATGQPVGPGTPVSLALSASPKLDPYFEPELPLQPAVTPVPPTNNSS
SSSNNNNGVWHHHHVQQQQQSGSMDHDSLSYTQLYPPLNDLVVSSSSSVG
GGTASSAGGGSSASASSSGVYSTEMQYPDTTTGNLYYNNNNHYYYDYDAT
VDVATSMIRPFSANSNSCSSSSESERQLSTGNASIVNETSPSQTTYSDLS
HNFELSYFSDNSSQQHQHQQQQQHLMEQQHLQYQYATWRASFLDH

BO03734.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
sim-PA 688 CG7771-PA 1..688 1..688 3570 100 Plus
sim-PC 675 CG7771-PC 5..675 18..688 3469 99.9 Plus
sim-PB 664 CG7771-PB 1..664 25..688 3437 100 Plus
sim-PD 672 CG7771-PD 1..672 25..688 3418 98.8 Plus
trh-PG 923 CG42865-PG 88..481 26..391 671 41 Plus