Clone Sequence Records
BO03746.3prime Sequence
776 bp (719 high quality bases) assembled on 2005-12-01
> BO03746.3prime
ATGGTCTAGAAAGCTTGCTTTTCCAATGGCCGCCGTTATCAGCTCCGCCA
CGTCCTGGTCCGTGCTGCGCACCGTCAGATTGAGCGTGACGCCTTCTGAA
AGCGCCAGCTTGGCCCGCACAAGAATCTCGGCGCCGCCTCTGAAGGTTCC
TGAACAGAGCAACGTATGCAGGTGCGTACCCTCGGGCACATTCTCAGAGA
GGTTTGCAGCGCCCAAGCCCAGGATCTTGACTATAGTGTTGACGGCATCC
TGCAAGGTGGTCACTGCCGACAGCACAAAGGTATCCTCGGCTTGTAGCCA
TTCTTCGCTGTCAGCCGCATCCCAGGACACTTGGAAATTGTTCTTTCTGG
TTTTCTGTATCTGATCGGCAACCGTCAGCTCCAAATCCTCTAGCATGTAC
TCGTCGTCATAGCCCTCCTCTGACTCCGGCTCGCCGGTGTTGGGGTCGCA
GTCCTTGACCACAAATCGTAAAGTGGCACCAAAGGTGGCTATGGAATTGG
CGGCGTCGGGCGGGAATTCTACGATGACAAAAGTGGTTTGCAGATCGTTG
TAGGGTAGCTTGGGACATGGAATGACCGCCCTGGTTGTGAATCCTTCCGG
CAGCGTGAGTTCCACCCGCACATTTTCAAGGATTTGGTCGGACAGCGTAT
TCAAGCAATCGAACTGGAAGACCACGTGCTGGCCGAATATGTGTTTGATG
CACTGCACCGTGTACTCCGTTTCACTTTCAGTAAGCTGGATGGGAGCTGT
GCTGCGATGGATGGGGCCCAGCACCT
BO03746.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:53:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1528-PA | 2640 | gammaCop-RA | 1883..2637 | 776..22 | 3775 | 100 | Minus |
| CG1528-PB | 2652 | gammaCop-RB | 1895..2649 | 776..22 | 3775 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:57:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaCOP-RD | 3054 | CG1528-RD | 1976..2734 | 776..18 | 3780 | 99.9 | Minus |
| gammaCOP-RC | 3054 | CG1528-RC | 1976..2734 | 776..18 | 3780 | 99.9 | Minus |
| gammaCOP-RB | 3276 | CG1528-RB | 2198..2956 | 776..18 | 3780 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:57:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31574437..31574724 | 776..489 | 1440 | 100 | Minus |
| 3R | 32079331 | 3R | 31574799..31574986 | 490..303 | 940 | 100 | Minus |
| 3R | 32079331 | 3R | 31575043..31575198 | 304..149 | 780 | 100 | Minus |
| 3R | 32079331 | 3R | 31575253..31575387 | 152..18 | 660 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:57:55 has no hits.
BO03746.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:47:42 Download gff for
BO03746.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1528-PB | 1895..2652 | 19..776 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:53:41 Download gff for
BO03746.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1528-PB | 1895..2652 | 19..776 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:35:54 Download gff for
BO03746.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaCop-RB | 2198..2961 | 13..776 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:38:57 Download gff for
BO03746.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaCOP-RB | 2198..2961 | 13..776 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:38:57 Download gff for
BO03746.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31574437..31574724 | 489..776 | 100 | -> | Minus |
| 3R | 31574801..31574986 | 303..488 | 100 | -> | Minus |
| 3R | 31575045..31575197 | 150..302 | 100 | -> | Minus |
| 3R | 31575256..31575392 | 13..149 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:35:54 Download gff for
BO03746.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27400159..27400446 | 489..776 | 100 | -> | Minus |
| arm_3R | 27400523..27400708 | 303..488 | 100 | -> | Minus |
| arm_3R | 27400767..27400919 | 150..302 | 100 | -> | Minus |
| arm_3R | 27400978..27401114 | 13..149 | 97 | | Minus |
BO03746.5prime Sequence
730 bp (667 high quality bases) assembled on 2005-12-01
> BO03746.5prime
GAAGTTATCAGTCGACATGAACTATTTTTCCCTTACCTCGCACAAAAAAC
ATCGCGGCCATCCGTCAGCAGGACCGAGCAATGCGTACCAGAACCTGGAA
AAAACCTCGGTGCTTCAGGAGACGCGCACCTTCAATGAGACGCCGGTGAA
CCCAAGGAAGTGCATCCACATCCTGACCAAAATCCTGTACCTGATTAATC
AGGGTGAGCAGCTTGTGGCCCGCGAGGCCACCGACTGCTTTTTTGCGATG
ACGAAGCTCTTCCAATCTAAGGACGTGGTGCTGCGTCGTATGGTATACCT
GGGCATCAAGGAGCTGAGCTCCATTGCCGAGGACGTCATCATCGTGACTA
GCTCGCTAACGAAGGATATGACCGGCAAGGAAGACCTGTACAGGGCCGCC
GCAATCCGGGCCTTGTGCAGCATCACGGATAACACCATGTTGCAGGCCGT
GGAGCGCTACATGAAGCAGTGCATTGTTGACAAAAACGCGGCAGTTTCTT
GTGCTGCATTGGTCAGTTCTTTGAGATTGGCCAACACTGCCGGCGACGTG
GTCAAGAGGTGGGCAAACGAGGCCCAGGAGGCTTTGAACAGCGACAACAT
TATGGTACAGTACCACGCGTTGGGTCTGCTCTACCATATCCGCAAGTCGG
ATCGGCTGGCTGTCTCCAAGTTGGTCAACAAGCTGACCAGAGGATCTCTA
AAGAGTCCCTATGCCGTTTGCATGCTGATA
BO03746.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:53:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1528-PB | 2652 | gammaCop-RB | 1..714 | 17..730 | 3570 | 100 | Plus |
| CG1528-PA | 2640 | gammaCop-RA | 40..702 | 68..730 | 3315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:42:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaCOP-RB | 3276 | CG1528-RB | 302..1017 | 15..730 | 3580 | 100 | Plus |
| gammaCOP-RA | 3057 | CG1528-RA | 136..798 | 68..730 | 3315 | 100 | Plus |
| gammaCOP-RD | 3054 | CG1528-RD | 136..795 | 71..730 | 3300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:42:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31572444..31573156 | 15..727 | 3565 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:42:15 has no hits.
BO03746.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:47:43 Download gff for
BO03746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1528-PB | 1..713 | 17..729 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:53:42 Download gff for
BO03746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1528-PB | 1..713 | 17..729 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:34:06 Download gff for
BO03746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaCop-RB | 299..1016 | 10..729 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:25:37 Download gff for
BO03746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaCOP-RB | 299..1016 | 10..729 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:25:37 Download gff for
BO03746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31572441..31573158 | 10..729 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:34:06 Download gff for
BO03746.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27398163..27398880 | 10..729 | 99 | | Plus |
BO03746.complete Sequence
2686 bp assembled on 2006-10-10
GenBank Submission: FJ629588
> BO03746.complete
GAAGTTATCAGTCGACATGAACTATTTTTCCCTTACCTCGCACAAAAAAC
ATCGCGGCCATCCGTCAGCAGGACCGAGCAATGCGTACCAGAACCTGGAA
AAAACCTCGGTGCTTCAGGAGACGCGCACCTTCAATGAGACGCCGGTGAA
CCCAAGGAAGTGCATCCACATCCTGACCAAAATCCTGTACCTGATTAATC
AGGGTGAGCAGCTTGTGGCCCGCGAGGCCACCGACTGCTTTTTTGCGATG
ACGAAGCTCTTCCAATCTAAGGACGTGGTGCTGCGTCGTATGGTATACCT
GGGCATCAAGGAGCTGAGCTCCATTGCCGAGGACGTCATCATCGTGACTA
GCTCGCTAACGAAGGATATGACCGGCAAGGAAGACCTGTACAGGGCCGCC
GCAATCCGGGCCTTGTGCAGCATCACGGATAACACCATGTTGCAGGCCGT
GGAGCGCTACATGAAGCAGTGCATTGTTGACAAAAACGCGGCAGTTTCTT
GTGCTGCATTGGTCAGTTCTTTGAGATTGGCCAACACTGCCGGCGACGTG
GTCAAGAGGTGGGCAAACGAGGCCCAGGAGGCTTTGAACAGCGACAACAT
TATGGTACAGTACCACGCGTTGGGTCTGCTCTACCATATCCGCAAGTCGG
ATCGGCTGGCTGTCTCCAAGTTGGTCAACAAGCTGACCAGAGGATCTCTA
AAGAGTCCCTATGCCGTTTGCATGCTGATACGCATTGCCTGTAAGCTGAT
CGAGGAGGAGGACATTCCCTCTGAGGAGCTTTCCGATTCACCCTTGTTTA
CGTTCATCGAGTCCTGTCTGCGCCACAAGAGCGAGATGGTCATCTACGAG
GCGGCCCACGCCATTGTCAACCTCAAGAACACCAATCCGCGAATGCTATC
GCCGGCGTTCTCCATCCTCCAGCTTTTCTGCAGCTCGCCGAAGGCAACGT
TGCGCTTTGCGGCTGTGCGCACGCTTAACAAGGTGGCGATGACGCACCCG
GCTGCGGTGACCACCTGTAACTTGGACCTGGAAGGTCTCATCACGGACTC
CAATCGATCGGTGGCCACTCTGGCCATCACTACGCTGCTAAAGACCGGCG
CTGAATCCTCGGTAGAGCGTCTGATGAAGCAGATCTCCACGTTTGTGGCG
GAGATTTCCGATGAATTCAAGGTGGTGGTCGTGCAGGCCATTTGCGCTCT
GTGCACCAAATATCCGCGCAAGCACACAGTGCTGATGAACTTCCTCAGCG
GTATGCTGCGCGAGGAGGGTGGCCTTGAATACAAGACCTCCATAGTTGAC
ACCATCATCACGATCATCGAGGAGAATGCGGACGCCAAGGAGTCCGGTTT
GTCGCATCTGTGCGAGTTCATCGAGGATTGTGAACACGTTTCACTGGCGG
TGAGGATTCTTCACCTGCTGGGCAAGGAGGGACCCTTTGCGGCCACACCC
TCCAAGTATATACGCTTTATCTACAACCGCGTCATCTTGGAGAGCCCTAT
TGTGCGAGCAGCCGCGGTCACGGCCATGGCCCAGTTTGGAGCATCTTGTC
CAGCCTTGTTAAGCAATATCCTCGTTCTGCTGGGTCGTTGCCAGATGGAC
CCGGACGACGAGGTGCGTGACCGTGCCACCTACTACCTTAGCATTCTTAA
CTCGGAAAGGCCAGAGCTGTACAAGAACTACATCATCGAAAGGGAGAACT
GTTCTCTGGCTCTGCTGGAGAAGTCGCTGGTCGAACATCTGAATGGTGAC
GTGGACACACGCTTCGATATTTCCATTGTGCCCAAGGCGGCCATAGTTAA
GCCAGTTATTGCCAACGACGTAATGCTAGTTACCAGCAGTGCTCCACGGC
CGCCGAAGATCACGCGCGAGGAGGAGAGTGCTGCACGTCTGGCACAGCTG
CCGGGCATCCAGGTGCTGGGCCCCATCCATCGCAGCACAGCTCCCATCCA
GCTTACTGAAAGTGAAACGGAGTACACGGTGCAGTGCATCAAACACATAT
TCGGCCAGCACGTGGTCTTCCAGTTCGATTGCTTGAATACGCTGTCCGAC
CAAATCCTTGAAAATGTGCGGGTGGAACTCACGCTGCCGGAAGGATTCAC
AACCAGGGCGGTCATTCCATGTCCCAAGCTACCCTACAACGATCTGCAAA
CCACTTTTGTCATCGTAGAATTCCCGCCCGACGCCGCCAATTCCATAGCC
ACCTTTGGTGCCACTTTACGATTTGTGGTCAAGGACTGCGACCCCAACAC
CGGCGAGCCGGAGTCAGAGGAGGGCTATGACGACGAGTACATGCTAGAGG
ATTTGGAGCTGACGGTTGCCGATCAGATACAGAAAACCAGAAAGAACAAT
TTCCAAGTGTCCTGGGATGCGGCTGACAGCGAAGAATGGCTACAAGCCGA
GGATACCTTTGTGCTGTCGGCAGTGACCACCTTGCAGGATGCCGTCAACA
CTATAGTCAAGATCCTGGGCTTGGGCGCTGCAAACCTCTCTGAGAATGTG
CCCGAGGGTACGCACCTGCATACGTTGCTCTGTTCAGGAACCTTCAGAGG
CGGCGCCGAGATTCTTGTGCGGGCCAAGCTGGCGCTTTCAGAAGGCGTCA
CGCTCAATCTGACGGTGCGCAGCACGGACCAGGACGTGGCGGAGCTGATA
ACGGCGGCCATTGGAAAAGCAAGCTTTCTAGACCAT
BO03746.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:11:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaCOP-RB | 2652 | CG1528-PB | 1..2649 | 17..2665 | 13230 | 100 | Plus |
| gammaCOP-RA | 2640 | CG1528-PA | 40..2637 | 68..2665 | 12975 | 100 | Plus |
| gammaCOP-RD | 2694 | CG1528-PD | 40..2638 | 71..2669 | 12965 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:11:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaCOP-RB | 3276 | CG1528-RB | 302..2956 | 15..2669 | 13245 | 99.9 | Plus |
| gammaCOP-RA | 3057 | CG1528-RA | 136..2737 | 68..2669 | 12980 | 99.9 | Plus |
| gammaCOP-RD | 3054 | CG1528-RD | 136..2734 | 71..2669 | 12965 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:11:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31573253..31574724 | 727..2198 | 7345 | 99.9 | Plus |
| 3R | 32079331 | 3R | 31572444..31573156 | 15..727 | 3565 | 100 | Plus |
| 3R | 32079331 | 3R | 31574799..31574986 | 2197..2384 | 940 | 100 | Plus |
| 3R | 32079331 | 3R | 31575043..31575198 | 2383..2538 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 31575253..31575387 | 2535..2669 | 660 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:11:02 has no hits.
BO03746.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:56 Download gff for
BO03746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaCop-RB | 1..2652 | 17..2668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:06:13 Download gff for
BO03746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaCop-RB | 299..2961 | 10..2674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:03:55 Download gff for
BO03746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaCop-RB | 304..2951 | 17..2664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:57 Download gff for
BO03746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaCop-RB | 299..2961 | 10..2674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:42 Download gff for
BO03746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaCOP-RB | 304..2951 | 17..2664 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:42 Download gff for
BO03746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31572446..31573156 | 17..727 | 100 | -> | Plus |
| 3R | 31573254..31574724 | 728..2198 | 99 | -> | Plus |
| 3R | 31574801..31574986 | 2199..2384 | 100 | -> | Plus |
| 3R | 31575045..31575197 | 2385..2537 | 100 | -> | Plus |
| 3R | 31575256..31575382 | 2538..2664 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:03:55 Download gff for
BO03746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27398168..27398878 | 17..727 | 100 | -> | Plus |
| arm_3R | 27398976..27400446 | 728..2198 | 99 | -> | Plus |
| arm_3R | 27400523..27400708 | 2199..2384 | 100 | -> | Plus |
| arm_3R | 27400767..27400919 | 2385..2537 | 100 | -> | Plus |
| arm_3R | 27400978..27401104 | 2538..2664 | 100 | | Plus |
BO03746.pep Sequence
Translation from 16 to 2686
> BO03746.pep
MNYFSLTSHKKHRGHPSAGPSNAYQNLEKTSVLQETRTFNETPVNPRKCI
HILTKILYLINQGEQLVAREATDCFFAMTKLFQSKDVVLRRMVYLGIKEL
SSIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDNTMLQAVERYMK
QCIVDKNAAVSCAALVSSLRLANTAGDVVKRWANEAQEALNSDNIMVQYH
ALGLLYHIRKSDRLAVSKLVNKLTRGSLKSPYAVCMLIRIACKLIEEEDI
PSEELSDSPLFTFIESCLRHKSEMVIYEAAHAIVNLKNTNPRMLSPAFSI
LQLFCSSPKATLRFAAVRTLNKVAMTHPAAVTTCNLDLEGLITDSNRSVA
TLAITTLLKTGAESSVERLMKQISTFVAEISDEFKVVVVQAICALCTKYP
RKHTVLMNFLSGMLREEGGLEYKTSIVDTIITIIEENADAKESGLSHLCE
FIEDCEHVSLAVRILHLLGKEGPFAATPSKYIRFIYNRVILESPIVRAAA
VTAMAQFGASCPALLSNILVLLGRCQMDPDDEVRDRATYYLSILNSERPE
LYKNYIIERENCSLALLEKSLVEHLNGDVDTRFDISIVPKAAIVKPVIAN
DVMLVTSSAPRPPKITREEESAARLAQLPGIQVLGPIHRSTAPIQLTESE
TEYTVQCIKHIFGQHVVFQFDCLNTLSDQILENVRVELTLPEGFTTRAVI
PCPKLPYNDLQTTFVIVEFPPDAANSIATFGATLRFVVKDCDPNTGEPES
EEGYDDEYMLEDLELTVADQIQKTRKNNFQVSWDAADSEEWLQAEDTFVL
SAVTTLQDAVNTIVKILGLGAANLSENVPEGTHLHTLLCSGTFRGGAEIL
VRAKLALSEGVTLNLTVRSTDQDVAELITAAIGKASFLDH
BO03746.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaCOP-PB | 883 | CG1528-PB | 1..883 | 1..883 | 4463 | 100 | Plus |
| gammaCOP-PD | 897 | CG1528-PD | 3..881 | 8..886 | 4367 | 98.6 | Plus |
| gammaCOP-PC | 878 | CG1528-PC | 3..878 | 8..883 | 4366 | 98.9 | Plus |
| gammaCOP-PA | 879 | CG1528-PA | 14..879 | 18..883 | 4366 | 100 | Plus |
