Clone Sequence Records
BO03858.3prime Sequence
610 bp (608 high quality bases) assembled on 2005-12-01
> BO03858.3prime
ATGGTCTAGAAAGCTTGCTTTTAAGAATTTGCACTTCCTTTTCTTTGTGG
GCTCTGGTGGCTCGAGGGCGGCCAGGATGGCCTCGTCGAATACATTTTTC
AGGCCCTTCTGTGTCAAGGCCGAGCACTCCACGTACTTGACGGCCTTCAG
CTCCTTGGCCAGCTTCTCGCCCTGCTCCATGGTGATGGGCTTCTGCTTGT
TCTTGGCCAGCTTCTCCAGCGTGCTGTTCTCGTCGCGCAAATCAATCTGT
GTGCCCACCAGCAGGAACGGCGTCTTTTGGCAATGGTGTGTAATCTCGGG
CACCCACTTCTCCTTGACGTTCTCGAAGGAACTGGGACTGACCACCGAAA
AGCAGACAAGGAAGACATCCGTCTGCGGATAGGAGAGCGGACGCAGCCGA
TCGTAGTCCTCCTGTCCGGCCGTATCGAACAGGCCCAGTGTGTAGGGCTC
ACCGCCGATCATCACAGTGACCGCATAGTTGTCGAACACCGTGGGCACGT
ACTCCGACGGGAACTTGTTGGTTGTATACGAGATGAGCAGGCATGTCTTA
CCCACGGCTCCGTCGCCGACGACCACGCACTTGATGGTTTGCATGTCGAC
TGATAACTTC
BO03858.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:54:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12530-PA | 576 | Cdc42-RA | 1..573 | 594..22 | 2865 | 100 | Minus |
CG12530-PB | 576 | Cdc42-RB | 1..573 | 594..22 | 2865 | 100 | Minus |
CG8556-PA | 579 | Rac2-RA | 169..233 | 426..362 | 175 | 90.7 | Minus |
CG2248-PA | 579 | Rac1-RA | 10..59 | 585..536 | 150 | 92 | Minus |
CG2248-PA | 579 | Rac1-RA | 464..520 | 131..75 | 135 | 89.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:05:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdc42-RD | 2005 | CG12530-RD | 84..658 | 596..22 | 2875 | 100 | Minus |
Cdc42-RC | 2078 | CG12530-RC | 157..731 | 596..22 | 2875 | 100 | Minus |
Cdc42-RA | 1392 | CG12530-RA | 157..731 | 596..22 | 2875 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:05:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19697956..19698245 | 596..307 | 1450 | 100 | Minus |
X | 23542271 | X | 19698305..19698591 | 308..22 | 1435 | 100 | Minus |
3L | 28110227 | 3L | 1301827..1302347 | 75..595 | 610 | 74.5 | Plus |
3L | 28110227 | 3L | 7434278..7434511 | 362..595 | 465 | 79.9 | Plus |
3R | 32079331 | 3R | 27638122..27638245 | 438..315 | 200 | 77.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:05:36 has no hits.
BO03858.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:49:41 Download gff for
BO03858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdc42-PB | 1..576 | 19..594 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:56:29 Download gff for
BO03858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12530-PB | 1..576 | 19..594 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:00:05 Download gff for
BO03858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdc42-RC | 153..734 | 19..602 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:43:18 Download gff for
BO03858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdc42-RA | 153..734 | 19..602 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:43:18 Download gff for
BO03858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19697952..19698245 | 307..602 | 98 | -> | Minus |
X | 19698307..19698590 | 23..306 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:00:05 Download gff for
BO03858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19591985..19592278 | 307..602 | 98 | -> | Minus |
arm_X | 19592340..19592623 | 23..306 | 100 | -> | Minus |
BO03858.5prime Sequence
559 bp (550 high quality bases) assembled on 2005-09-08
> BO03858.5prime
CAGTCGACATGCAAACCATCAAGTGCGTGGTCGTCGGCGACGGAGCCGTG
GGTAAGACATGCCTGCTCATCTCGTATACAACCAACAAGTTCCCGTCGGA
GTACGTGCCCACGGTGTTCGACAACTATGCGGTCACTGTGATGATCGGGG
GTGAGCCCTACACACTGGGCCTGTTCGATACGGCCGGACAGGAGGACTAC
GATCGGCTGCGTCCGCTCTCCTATCCGCAGACGGATGTCTTCCTTGTCTG
CTTTTCGGTGGTCAGTCCCAGTTCCTTCGAGAACGTCAAGGAGAAGTGGG
TGCCCGAGATTACACACCATTGCCAAAAGACGCCGTTCCTGCTGGTGGGC
ACACAGATTGATTTGCGCGACGAGAACAGCACGCTGGAGAAGCTGGCCAA
GAACAAGTAGAAGCCCATCACCATGGAGCAGGGCGAGAAGCTGGCCAAGG
AGCTGAAGGACGTCAAGTACGTGGAGTGCTCGGCCTTGACACAGAAGGGC
CTGAAAAATGGATTCGACGAGGCCATCCTGGCCGCCCTCGAGCCACCAGA
GCCCACAAA
BO03858.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:54:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12530-PA | 576 | Cdc42-RA | 1..551 | 9..559 | 2655 | 99.2 | Plus |
CG12530-PB | 576 | Cdc42-RB | 1..551 | 9..559 | 2655 | 99.2 | Plus |
CG8556-PA | 579 | Rac2-RA | 169..233 | 177..241 | 175 | 90.7 | Plus |
CG2248-PA | 579 | Rac1-RA | 10..59 | 18..67 | 150 | 92 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:28:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdc42-RD | 2005 | CG12530-RD | 84..636 | 7..559 | 2705 | 99.3 | Plus |
Cdc42-RC | 2078 | CG12530-RC | 157..709 | 7..559 | 2705 | 99.3 | Plus |
Cdc42-RA | 1392 | CG12530-RA | 157..709 | 7..559 | 2705 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:28:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19697956..19698245 | 7..296 | 1435 | 99.7 | Plus |
X | 23542271 | X | 19698305..19698569 | 295..559 | 1280 | 98.9 | Plus |
3L | 28110227 | 3L | 1301827..1302347 | 528..8 | 550 | 73.7 | Minus |
3L | 28110227 | 3L | 7434278..7434511 | 241..8 | 465 | 79.9 | Minus |
3R | 32079331 | 3R | 27638122..27638245 | 165..288 | 200 | 77.4 | Plus |
Blast to na_te.dros performed 2015-02-09 18:28:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 3478..3556 | 391..467 | 129 | 64.6 | Plus |
BO03858.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:49:42 Download gff for
BO03858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdc42-PB | 1..548 | 9..556 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:56:31 Download gff for
BO03858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12530-PB | 1..548 | 9..556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:57:10 Download gff for
BO03858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdc42-RC | 153..706 | 1..556 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:11:31 Download gff for
BO03858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdc42-RA | 153..706 | 1..556 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:11:31 Download gff for
BO03858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19697952..19698245 | 1..296 | 98 | -> | Plus |
X | 19698307..19698566 | 297..556 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:57:10 Download gff for
BO03858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19591985..19592278 | 1..296 | 98 | -> | Plus |
arm_X | 19592340..19592599 | 297..556 | 98 | | Plus |
BO03858.complete Sequence
610 bp (610 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629590
> BO03858.complete
GAAGTTATCAGTCGACATGCAAACCATCAAGTGCGTGGTCGTCGGCGACG
GAGCCGTGGGTAAGACATGCCTGCTCATCTCGTATACAACCAACAAGTTC
CCGTCGGAGTACGTGCCCACGGTGTTCGACAACTATGCGGTCACTGTGAT
GATCGGCGGTGAGCCCTACACACTGGGCCTGTTCGATACGGCCGGACAGG
AGGACTACGATCGGCTGCGTCCGCTCTCCTATCCGCAGACGGATGTCTTC
CTTGTCTGCTTTTCGGTGGTCAGTCCCAGTTCCTTCGAGAACGTCAAGGA
GAAGTGGGTGCCCGAGATTACACACCATTGCCAAAAGACGCCGTTCCTGC
TGGTGGGCACACAGATTGATTTGCGCGACGAGAACAGCACGCTGGAGAAG
CTGGCCAAGAACAAGCAGAAGCCCATCACCATGGAGCAGGGCGAGAAGCT
GGCCAAGGAGCTGAAGGCCGTCAAGTACGTGGAGTGCTCGGCCTTGACAC
AGAAGGGCCTGAAAAATGTATTCGACGAGGCCATCCTGGCCGCCCTCGAG
CCACCAGAGCCCACAAAGAAAAGGAAGTGCAAATTCTTAAAAGCAAGCTT
TCTAGACCAT
BO03858.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:04:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdc42-RD | 576 | CG12530-PD | 1..573 | 17..589 | 2865 | 100 | Plus |
Cdc42-RC | 576 | CG12530-PC | 1..573 | 17..589 | 2865 | 100 | Plus |
Cdc42-RA | 576 | CG12530-PA | 1..573 | 17..589 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:04:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdc42-RD | 2005 | CG12530-RD | 84..658 | 15..589 | 2875 | 100 | Plus |
Cdc42-RC | 2078 | CG12530-RC | 157..731 | 15..589 | 2875 | 100 | Plus |
Cdc42-RA | 1392 | CG12530-RA | 157..731 | 15..589 | 2875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:04:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19697956..19698245 | 15..304 | 1450 | 100 | Plus |
X | 23542271 | X | 19698305..19698591 | 303..589 | 1435 | 100 | Plus |
3L | 28110227 | 3L | 1301827..1302347 | 536..16 | 610 | 74.5 | Minus |
3L | 28110227 | 3L | 7434278..7434511 | 249..16 | 465 | 79.9 | Minus |
3R | 32079331 | 3R | 27638122..27638245 | 173..296 | 200 | 77.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:04:50 has no hits.
BO03858.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:33 Download gff for
BO03858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdc42-RB | 1..576 | 17..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:16 Download gff for
BO03858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdc42-RB | 228..809 | 9..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:16:18 Download gff for
BO03858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdc42-RC | 159..730 | 17..588 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:34 Download gff for
BO03858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdc42-RB | 228..809 | 9..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:15 Download gff for
BO03858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdc42-RA | 159..730 | 17..588 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:15 Download gff for
BO03858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19697958..19698245 | 17..304 | 100 | -> | Plus |
X | 19698307..19698590 | 305..588 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:16:18 Download gff for
BO03858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19591991..19592278 | 17..304 | 100 | -> | Plus |
arm_X | 19592340..19592623 | 305..588 | 100 | | Plus |
BO03858.pep Sequence
Translation from 16 to 610
> BO03858.pep
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP
YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE
ITHHCQKTPFLLVGTQIDLRDENSTLEKLAKNKQKPITMEQGEKLAKELK
AVKYVECSALTQKGLKNVFDEAILAALEPPEPTKKRKCKFLKASFLDH
BO03858.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdc42-PD | 191 | CG12530-PD | 1..191 | 1..191 | 1000 | 100 | Plus |
Cdc42-PC | 191 | CG12530-PC | 1..191 | 1..191 | 1000 | 100 | Plus |
Cdc42-PA | 191 | CG12530-PA | 1..191 | 1..191 | 1000 | 100 | Plus |
Rac1-PB | 192 | CG2248-PB | 1..192 | 1..191 | 721 | 69.8 | Plus |
Rac1-PA | 192 | CG2248-PA | 1..192 | 1..191 | 721 | 69.8 | Plus |