Clone BO03858 Report

Search the DGRC for BO03858

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:38
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCdc42-RA
Protein status:BO03858.pep:
Sequenced Size:610

Clone Sequence Records

BO03858.3prime Sequence

610 bp (608 high quality bases) assembled on 2005-12-01

> BO03858.3prime
ATGGTCTAGAAAGCTTGCTTTTAAGAATTTGCACTTCCTTTTCTTTGTGG
GCTCTGGTGGCTCGAGGGCGGCCAGGATGGCCTCGTCGAATACATTTTTC
AGGCCCTTCTGTGTCAAGGCCGAGCACTCCACGTACTTGACGGCCTTCAG
CTCCTTGGCCAGCTTCTCGCCCTGCTCCATGGTGATGGGCTTCTGCTTGT
TCTTGGCCAGCTTCTCCAGCGTGCTGTTCTCGTCGCGCAAATCAATCTGT
GTGCCCACCAGCAGGAACGGCGTCTTTTGGCAATGGTGTGTAATCTCGGG
CACCCACTTCTCCTTGACGTTCTCGAAGGAACTGGGACTGACCACCGAAA
AGCAGACAAGGAAGACATCCGTCTGCGGATAGGAGAGCGGACGCAGCCGA
TCGTAGTCCTCCTGTCCGGCCGTATCGAACAGGCCCAGTGTGTAGGGCTC
ACCGCCGATCATCACAGTGACCGCATAGTTGTCGAACACCGTGGGCACGT
ACTCCGACGGGAACTTGTTGGTTGTATACGAGATGAGCAGGCATGTCTTA
CCCACGGCTCCGTCGCCGACGACCACGCACTTGATGGTTTGCATGTCGAC
TGATAACTTC

BO03858.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG12530-PA 576 Cdc42-RA 1..573 594..22 2865 100 Minus
CG12530-PB 576 Cdc42-RB 1..573 594..22 2865 100 Minus
CG8556-PA 579 Rac2-RA 169..233 426..362 175 90.7 Minus
CG2248-PA 579 Rac1-RA 10..59 585..536 150 92 Minus
CG2248-PA 579 Rac1-RA 464..520 131..75 135 89.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
Cdc42-RD 2005 CG12530-RD 84..658 596..22 2875 100 Minus
Cdc42-RC 2078 CG12530-RC 157..731 596..22 2875 100 Minus
Cdc42-RA 1392 CG12530-RA 157..731 596..22 2875 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19697956..19698245 596..307 1450 100 Minus
X 23542271 X 19698305..19698591 308..22 1435 100 Minus
3L 28110227 3L 1301827..1302347 75..595 610 74.5 Plus
3L 28110227 3L 7434278..7434511 362..595 465 79.9 Plus
3R 32079331 3R 27638122..27638245 438..315 200 77.4 Minus
Blast to na_te.dros performed on 2015-02-13 15:05:36 has no hits.

BO03858.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:49:41 Download gff for BO03858.3prime
Subject Subject Range Query Range Percent Splice Strand
Cdc42-PB 1..576 19..594 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:56:29 Download gff for BO03858.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12530-PB 1..576 19..594 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:00:05 Download gff for BO03858.3prime
Subject Subject Range Query Range Percent Splice Strand
Cdc42-RC 153..734 19..602 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:43:18 Download gff for BO03858.3prime
Subject Subject Range Query Range Percent Splice Strand
Cdc42-RA 153..734 19..602 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:43:18 Download gff for BO03858.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19697952..19698245 307..602 98 -> Minus
X 19698307..19698590 23..306 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:00:05 Download gff for BO03858.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19591985..19592278 307..602 98 -> Minus
arm_X 19592340..19592623 23..306 100 -> Minus

BO03858.5prime Sequence

559 bp (550 high quality bases) assembled on 2005-09-08

> BO03858.5prime
CAGTCGACATGCAAACCATCAAGTGCGTGGTCGTCGGCGACGGAGCCGTG
GGTAAGACATGCCTGCTCATCTCGTATACAACCAACAAGTTCCCGTCGGA
GTACGTGCCCACGGTGTTCGACAACTATGCGGTCACTGTGATGATCGGGG
GTGAGCCCTACACACTGGGCCTGTTCGATACGGCCGGACAGGAGGACTAC
GATCGGCTGCGTCCGCTCTCCTATCCGCAGACGGATGTCTTCCTTGTCTG
CTTTTCGGTGGTCAGTCCCAGTTCCTTCGAGAACGTCAAGGAGAAGTGGG
TGCCCGAGATTACACACCATTGCCAAAAGACGCCGTTCCTGCTGGTGGGC
ACACAGATTGATTTGCGCGACGAGAACAGCACGCTGGAGAAGCTGGCCAA
GAACAAGTAGAAGCCCATCACCATGGAGCAGGGCGAGAAGCTGGCCAAGG
AGCTGAAGGACGTCAAGTACGTGGAGTGCTCGGCCTTGACACAGAAGGGC
CTGAAAAATGGATTCGACGAGGCCATCCTGGCCGCCCTCGAGCCACCAGA
GCCCACAAA

BO03858.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG12530-PA 576 Cdc42-RA 1..551 9..559 2655 99.2 Plus
CG12530-PB 576 Cdc42-RB 1..551 9..559 2655 99.2 Plus
CG8556-PA 579 Rac2-RA 169..233 177..241 175 90.7 Plus
CG2248-PA 579 Rac1-RA 10..59 18..67 150 92 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
Cdc42-RD 2005 CG12530-RD 84..636 7..559 2705 99.3 Plus
Cdc42-RC 2078 CG12530-RC 157..709 7..559 2705 99.3 Plus
Cdc42-RA 1392 CG12530-RA 157..709 7..559 2705 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19697956..19698245 7..296 1435 99.7 Plus
X 23542271 X 19698305..19698569 295..559 1280 98.9 Plus
3L 28110227 3L 1301827..1302347 528..8 550 73.7 Minus
3L 28110227 3L 7434278..7434511 241..8 465 79.9 Minus
3R 32079331 3R 27638122..27638245 165..288 200 77.4 Plus
Blast to na_te.dros performed 2015-02-09 18:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1c 5443 Rt1c RT1C 5443bp 3478..3556 391..467 129 64.6 Plus

BO03858.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:49:42 Download gff for BO03858.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdc42-PB 1..548 9..556 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:56:31 Download gff for BO03858.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12530-PB 1..548 9..556 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:57:10 Download gff for BO03858.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdc42-RC 153..706 1..556 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:11:31 Download gff for BO03858.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdc42-RA 153..706 1..556 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:11:31 Download gff for BO03858.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19697952..19698245 1..296 98 -> Plus
X 19698307..19698566 297..556 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:57:10 Download gff for BO03858.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19591985..19592278 1..296 98 -> Plus
arm_X 19592340..19592599 297..556 98   Plus

BO03858.complete Sequence

610 bp (610 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629590

> BO03858.complete
GAAGTTATCAGTCGACATGCAAACCATCAAGTGCGTGGTCGTCGGCGACG
GAGCCGTGGGTAAGACATGCCTGCTCATCTCGTATACAACCAACAAGTTC
CCGTCGGAGTACGTGCCCACGGTGTTCGACAACTATGCGGTCACTGTGAT
GATCGGCGGTGAGCCCTACACACTGGGCCTGTTCGATACGGCCGGACAGG
AGGACTACGATCGGCTGCGTCCGCTCTCCTATCCGCAGACGGATGTCTTC
CTTGTCTGCTTTTCGGTGGTCAGTCCCAGTTCCTTCGAGAACGTCAAGGA
GAAGTGGGTGCCCGAGATTACACACCATTGCCAAAAGACGCCGTTCCTGC
TGGTGGGCACACAGATTGATTTGCGCGACGAGAACAGCACGCTGGAGAAG
CTGGCCAAGAACAAGCAGAAGCCCATCACCATGGAGCAGGGCGAGAAGCT
GGCCAAGGAGCTGAAGGCCGTCAAGTACGTGGAGTGCTCGGCCTTGACAC
AGAAGGGCCTGAAAAATGTATTCGACGAGGCCATCCTGGCCGCCCTCGAG
CCACCAGAGCCCACAAAGAAAAGGAAGTGCAAATTCTTAAAAGCAAGCTT
TCTAGACCAT

BO03858.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
Cdc42-RD 576 CG12530-PD 1..573 17..589 2865 100 Plus
Cdc42-RC 576 CG12530-PC 1..573 17..589 2865 100 Plus
Cdc42-RA 576 CG12530-PA 1..573 17..589 2865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:04:53
Subject Length Description Subject Range Query Range Score Percent Strand
Cdc42-RD 2005 CG12530-RD 84..658 15..589 2875 100 Plus
Cdc42-RC 2078 CG12530-RC 157..731 15..589 2875 100 Plus
Cdc42-RA 1392 CG12530-RA 157..731 15..589 2875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:04:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19697956..19698245 15..304 1450 100 Plus
X 23542271 X 19698305..19698591 303..589 1435 100 Plus
3L 28110227 3L 1301827..1302347 536..16 610 74.5 Minus
3L 28110227 3L 7434278..7434511 249..16 465 79.9 Minus
3R 32079331 3R 27638122..27638245 173..296 200 77.4 Plus
Blast to na_te.dros performed on 2014-11-27 21:04:50 has no hits.

BO03858.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:22:33 Download gff for BO03858.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc42-RB 1..576 17..592 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:46:16 Download gff for BO03858.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc42-RB 228..809 9..592 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:16:18 Download gff for BO03858.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc42-RC 159..730 17..588 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:22:34 Download gff for BO03858.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc42-RB 228..809 9..592 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:15 Download gff for BO03858.complete
Subject Subject Range Query Range Percent Splice Strand
Cdc42-RA 159..730 17..588 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:15 Download gff for BO03858.complete
Subject Subject Range Query Range Percent Splice Strand
X 19697958..19698245 17..304 100 -> Plus
X 19698307..19698590 305..588 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:16:18 Download gff for BO03858.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19591991..19592278 17..304 100 -> Plus
arm_X 19592340..19592623 305..588 100   Plus

BO03858.pep Sequence

Translation from 16 to 610

> BO03858.pep
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP
YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPE
ITHHCQKTPFLLVGTQIDLRDENSTLEKLAKNKQKPITMEQGEKLAKELK
AVKYVECSALTQKGLKNVFDEAILAALEPPEPTKKRKCKFLKASFLDH

BO03858.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:45:48
Subject Length Description Subject Range Query Range Score Percent Strand
Cdc42-PD 191 CG12530-PD 1..191 1..191 1000 100 Plus
Cdc42-PC 191 CG12530-PC 1..191 1..191 1000 100 Plus
Cdc42-PA 191 CG12530-PA 1..191 1..191 1000 100 Plus
Rac1-PB 192 CG2248-PB 1..192 1..191 721 69.8 Plus
Rac1-PA 192 CG2248-PA 1..192 1..191 721 69.8 Plus