Clone BO03884 Report

Search the DGRC for BO03884

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:38
Well:84
Vector:pDNR-Dual
Associated Gene/Transcriptsgl-RA
Protein status:BO03884.pep:
Sequenced Size:1465

Clone Sequence Records

BO03884.3prime Sequence

791 bp (753 high quality bases) assembled on 2005-12-01

> BO03884.3prime
ATGGTCTAGAAAGCTTGCCTTAAGCTGCGGCACAATGCCCCACGAGCGGA
GCAGTCCGGTGCGCTGGTACTTCTTGCCGATGGTCTGGACGTGGAAGCCG
ATCTGCTGCAGGCGCTCGTGGTCGAGAATCTTGCGGCCGTCGAAGATGTA
GGCTGGCTTCATCATCGATTGGTATATGCGCTTAAAGTCCAGATCAACAA
ACTCATCCCACTCCGTGCAGATGACCAACGCATGTGTGGCACGCACTGCG
CTGTACGGATCACTGTGGATCTGCACCGCCTTCTTCACCTTCTCCGGCGA
TTCCGTGACACTGGGATGCGTGAGGTCATCGATGATCTGCTCGGGTTCCA
CCTTCGGATCGTAGATATCCAGCGCGGCGCCCTCCTCCAGCAGAGTTTGG
CACACGGTAATGGCGGCTGTTTCGCGCGTATCGCCCGTATTCTTCTTGAA
GGCAAAGCCCAGGATCGCTATCCGCTTGTCCGACACCGTGTTGAACAGAC
TCTCGATGATTTTCTGCGAGAATCGACGCTTCTGGTACTCATTCATGTCG
ATCACCTGCTGCCAGTAGGCGGCCACCTCGGGCAGATTGAGGTTCTCGCA
GATGTAAATCAGATTGAGGATGTCCTTCTGAAAGCAACTGCCGCCGAAGC
CCACCGACGCCTGCAGGAACTTGGAACCGATGCGAGAGTCTAGACCCACG
GCCCTCGCCACCTCGGAAACATCTGCGCCCGTGGCCTCGCACACTGCCGA
CAGCGAATTGATGCTGGAGATTCGCTGGGCGAGGAATGCGT

BO03884.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG10072-PA 1431 sgl-RA 659..1428 791..22 3850 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
sgl-RA 2275 CG10072-RA 871..1645 791..17 3860 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:46:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6960184..6960958 17..791 3860 99.9 Plus
Blast to na_te.dros performed on 2015-02-13 01:46:10 has no hits.

BO03884.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:50:15 Download gff for BO03884.3prime
Subject Subject Range Query Range Percent Splice Strand
sgl-PA 659..1431 19..791 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:57:18 Download gff for BO03884.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10072-PA 659..1431 19..791 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:32:30 Download gff for BO03884.3prime
Subject Subject Range Query Range Percent Splice Strand
sgl-RA 871..1647 13..791 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:13:43 Download gff for BO03884.3prime
Subject Subject Range Query Range Percent Splice Strand
sgl-RA 871..1647 13..791 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:13:43 Download gff for BO03884.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6960182..6960958 13..791 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:32:30 Download gff for BO03884.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6953282..6954058 13..791 99   Plus

BO03884.5prime Sequence

805 bp (697 high quality bases) assembled on 2005-12-01

> BO03884.5prime
GAAGTTATCAGTCGACATGAAGGTCTGCTGCATTGGCGCTGGTTATGTCG
GCGGTCCGACCTGCGCGGTTATGGCGCTCAAATGCCCCGATATCGTGATA
ACTCTGGTGGACAAGAGCTCCGAGCGGATTGCCCAGTGGAATTCGGATAA
GTTGCCCATTTACGAGCCCGGCTTGGATGAGGTGGTGAAGAAGTGCCGCA
ATGTGAACCTCTTCTTCTCAACGGACATCGAGACGGCCATCAAGGAGGCG
GACCTCATCTTCATCTCGGTGAACACGCCCACAAAAACCTGCGGCAATGG
CAAGGGCCGAGCGGCGGACCTCAAGTACGTGGAGAGCGCAGCGCGGATGA
TCGCCGAGATCGCGCAGTCCAACAAGATTGTGGTGGAGAAGAGCACGGTG
CCCGTGCGGGCGGCGGAGAGCATCATGCACATACTGCGAGCGAACCAGAA
GCCGGGCATCCACTACGACATACTGTCCAATCCCGAGTTCCTCGCCGAGG
GCACCGCCATCAATGACCTGCTAAATGCGGATCGTGTGCTGATCGGCGGC
GAGGAGACGCCCGAGGGCCACCAGGCGGTGGAGAAGCTGTCGTGGATCTA
CGAGCACTGGATACCCAAGCAGAACATACTCACGACGAACACGTGGAGCA
GCGAGCTGTCTAAGCTGGCGGCCAACGCATTCCTCGCCCAGCGAATCTCC
AGCATCAATTCGCTGTCGGCAGTGTGCGAGGCCACGGGCGCAGATGTTTC
CGAGGTGGCGAGGGCCGTGGGTCTAGACTCTCGCATCGGGTTCAAGTTCC
TGCAG

BO03884.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG10072-PA 1431 sgl-RA 1..789 17..805 3895 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
sgl-RA 2275 CG10072-RA 209..1001 13..805 3920 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6960828..6961328 805..305 2475 99.6 Minus
3L 28110227 3L 6964397..6964550 166..13 755 99.4 Minus
3L 28110227 3L 6961810..6961951 306..165 710 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:58:20 has no hits.

BO03884.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:50:16 Download gff for BO03884.5prime
Subject Subject Range Query Range Percent Splice Strand
sgl-PA 1..789 17..805 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:57:19 Download gff for BO03884.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10072-PA 1..789 17..805 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:39:04 Download gff for BO03884.5prime
Subject Subject Range Query Range Percent Splice Strand
sgl-RA 206..1001 9..805 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:20:52 Download gff for BO03884.5prime
Subject Subject Range Query Range Percent Splice Strand
sgl-RA 206..1001 9..805 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:20:52 Download gff for BO03884.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6960828..6961327 306..805 99 <- Minus
3L 6961811..6961949 167..305 100 <- Minus
3L 6964397..6964553 9..166 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:39:04 Download gff for BO03884.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6953928..6954427 306..805 99 <- Minus
arm_3L 6954911..6955049 167..305 100 <- Minus
arm_3L 6957497..6957653 9..166 98   Minus

BO03884.complete Sequence

1465 bp (1465 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629591

> BO03884.complete
GAAGTTATCAGTCGACATGAAGGTCTGCTGCATTGGCGCTGGTTATGTCG
GCGGTCCGACCTGCGCGGTTATGGCGCTCAAATGCCCCGATATCGTGATA
ACTCTGGTGGACAAGAGCTCCGAGCGGATTGCCCAGTGGAATTCGGATAA
GTTGCCCATTTACGAGCCCGGCTTGGATGAGGTGGTGAAGAAGTGCCGCA
ATGTGAACCTCTTCTTCTCAACGGACATCGAGACGGCCATCAAGGAGGCG
GACCTCATCTTCATCTCGGTGAACACGCCCACAAAAACCTGCGGCAATGG
CAAGGGCCGAGCGGCGGACCTCAAGTACGTGGAGAGCGCAGCGCGGATGA
TCGCCGAGATCGCGCAGTCCAACAAGATTGTGGTGGAGAAGAGCACGGTG
CCCGTGCGGGCGGCGGAGAGCATCATGCACATACTGCGAGCGAACCAGAA
GCCGGGCATCCACTACGACATACTGTCCAATCCCGAGTTCCTCGCCGAGG
GCACCGCCATCAATGACCTGCTAAATGCGGATCGTGTGCTGATCGGCGGC
GAGGAGACGCCCGAGGGCCACCAGGCGGTGGAGAAGCTGTCGTGGATCTA
CGAGCACTGGATACCCAAGCAGAACATACTCACGACGAACACGTGGAGCA
GCGAGCTGTCTAAGCTGGCGGCCAACGCATTCCTCGCCCAGCGAATCTCC
AGCATCAATTCGCTGTCGGCAGTGTGCGAGGCCACGGGCGCAGATGTTTC
CGAGGTGGCGAGGGCCGTGGGTCTAGACTCTCGCATCGGTTCCAAGTTCC
TGCAGGCGTCGGTGGGCTTCGGCGGCAGTTGCTTTCAGAAGGACATCCTC
AATCTGATTTACATCTGCGAGAACCTCAATCTGCCCGAGGTGGCCGCCTA
CTGGCAGCAGGTGATCGACATGAATGAGTACCAGAAGCGTCGATTCTCGC
AGAAAATCATCGAGAGTCTGTTCAACACGGTGTCGGACAAGCGGATAGCG
ATCCTGGGCTTTGCCTTCAAGAAGAATACGGGCGATACGCGCGAAACAGC
CGCCATTACCGTGTGCCAAACTCTGCTGGAGGAGGGCGCCGCGCTGGATA
TCTACGATCCGAAGGTGGAACCCGAGCAGATCATCGATGACCTCACGCAT
CCCAGTGTCACGGAATCGCCGGAGAAGGTGAAGAAGGCGGTGCAGATCCA
CAGTGATCCGTACAGCGCAGTGCGTGCCACACATGCGTTGGTCATCTGCA
CGGAGTGGGATGAGTTTGTTGATCTGGACTTTAAGCGCATATACCAATCG
ATGATGAAGCCAGCCTACATCTTCGACGGCCGCAAGATTCTCGACCACGA
GCGCCTGCAGCAGATCGGCTTCCACGTCCAGACCATCGGCAAGAAGTACC
AGCGCACCGGACTGCTCCGCTCGTGGGGCATTGTGCCGCAGCTTAAGGCA
AGCTTTCTAGACCAT

BO03884.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:34:57
Subject Length Description Subject Range Query Range Score Percent Strand
sgl-RA 1431 CG10072-PA 1..1428 17..1444 7140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:34:58
Subject Length Description Subject Range Query Range Score Percent Strand
sgl-RA 2275 CG10072-RA 209..1645 13..1449 7155 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6960184..6961328 1449..305 5710 99.9 Minus
3L 28110227 3L 6964397..6964550 166..13 755 99.4 Minus
3L 28110227 3L 6961810..6961951 306..165 710 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:34:56 has no hits.

BO03884.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:43:47 Download gff for BO03884.complete
Subject Subject Range Query Range Percent Splice Strand
sgl-RA 1..1431 17..1447 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:14:02 Download gff for BO03884.complete
Subject Subject Range Query Range Percent Splice Strand
sgl-RA 250..1691 9..1453 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:13 Download gff for BO03884.complete
Subject Subject Range Query Range Percent Splice Strand
sgl-RA 213..1645 17..1449 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:43:47 Download gff for BO03884.complete
Subject Subject Range Query Range Percent Splice Strand
sgl-RA 250..1691 9..1453 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:23 Download gff for BO03884.complete
Subject Subject Range Query Range Percent Splice Strand
sgl-RA 213..1645 17..1449 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:23 Download gff for BO03884.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6960184..6961327 306..1449 99 <- Minus
3L 6961811..6961949 167..305 100 <- Minus
3L 6964397..6964546 17..166 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:13 Download gff for BO03884.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6953284..6954427 306..1449 99 <- Minus
arm_3L 6954911..6955049 167..305 100 <- Minus
arm_3L 6957497..6957646 17..166 100   Minus

BO03884.pep Sequence

Translation from 16 to 1465

> BO03884.pep
MKVCCIGAGYVGGPTCAVMALKCPDIVITLVDKSSERIAQWNSDKLPIYE
PGLDEVVKKCRNVNLFFSTDIETAIKEADLIFISVNTPTKTCGNGKGRAA
DLKYVESAARMIAEIAQSNKIVVEKSTVPVRAAESIMHILRANQKPGIHY
DILSNPEFLAEGTAINDLLNADRVLIGGEETPEGHQAVEKLSWIYEHWIP
KQNILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVARA
VGLDSRIGSKFLQASVGFGGSCFQKDILNLIYICENLNLPEVAAYWQQVI
DMNEYQKRRFSQKIIESLFNTVSDKRIAILGFAFKKNTGDTRETAAITVC
QTLLEEGAALDIYDPKVEPEQIIDDLTHPSVTESPEKVKKAVQIHSDPYS
AVRATHALVICTEWDEFVDLDFKRIYQSMMKPAYIFDGRKILDHERLQQI
GFHVQTIGKKYQRTGLLRSWGIVPQLKASFLDH

BO03884.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
sgl-PA 476 CG10072-PA 1..476 1..476 2454 100 Plus