Clone Sequence Records
BO03884.3prime Sequence
791 bp (753 high quality bases) assembled on 2005-12-01
> BO03884.3prime
ATGGTCTAGAAAGCTTGCCTTAAGCTGCGGCACAATGCCCCACGAGCGGA
GCAGTCCGGTGCGCTGGTACTTCTTGCCGATGGTCTGGACGTGGAAGCCG
ATCTGCTGCAGGCGCTCGTGGTCGAGAATCTTGCGGCCGTCGAAGATGTA
GGCTGGCTTCATCATCGATTGGTATATGCGCTTAAAGTCCAGATCAACAA
ACTCATCCCACTCCGTGCAGATGACCAACGCATGTGTGGCACGCACTGCG
CTGTACGGATCACTGTGGATCTGCACCGCCTTCTTCACCTTCTCCGGCGA
TTCCGTGACACTGGGATGCGTGAGGTCATCGATGATCTGCTCGGGTTCCA
CCTTCGGATCGTAGATATCCAGCGCGGCGCCCTCCTCCAGCAGAGTTTGG
CACACGGTAATGGCGGCTGTTTCGCGCGTATCGCCCGTATTCTTCTTGAA
GGCAAAGCCCAGGATCGCTATCCGCTTGTCCGACACCGTGTTGAACAGAC
TCTCGATGATTTTCTGCGAGAATCGACGCTTCTGGTACTCATTCATGTCG
ATCACCTGCTGCCAGTAGGCGGCCACCTCGGGCAGATTGAGGTTCTCGCA
GATGTAAATCAGATTGAGGATGTCCTTCTGAAAGCAACTGCCGCCGAAGC
CCACCGACGCCTGCAGGAACTTGGAACCGATGCGAGAGTCTAGACCCACG
GCCCTCGCCACCTCGGAAACATCTGCGCCCGTGGCCTCGCACACTGCCGA
CAGCGAATTGATGCTGGAGATTCGCTGGGCGAGGAATGCGT
BO03884.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:55:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10072-PA | 1431 | sgl-RA | 659..1428 | 791..22 | 3850 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:46:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sgl-RA | 2275 | CG10072-RA | 871..1645 | 791..17 | 3860 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:46:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6960184..6960958 | 17..791 | 3860 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:46:10 has no hits.
BO03884.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:50:15 Download gff for
BO03884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sgl-PA | 659..1431 | 19..791 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:57:18 Download gff for
BO03884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10072-PA | 659..1431 | 19..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:32:30 Download gff for
BO03884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sgl-RA | 871..1647 | 13..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:13:43 Download gff for
BO03884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sgl-RA | 871..1647 | 13..791 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:13:43 Download gff for
BO03884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6960182..6960958 | 13..791 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:32:30 Download gff for
BO03884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6953282..6954058 | 13..791 | 99 | | Plus |
BO03884.5prime Sequence
805 bp (697 high quality bases) assembled on 2005-12-01
> BO03884.5prime
GAAGTTATCAGTCGACATGAAGGTCTGCTGCATTGGCGCTGGTTATGTCG
GCGGTCCGACCTGCGCGGTTATGGCGCTCAAATGCCCCGATATCGTGATA
ACTCTGGTGGACAAGAGCTCCGAGCGGATTGCCCAGTGGAATTCGGATAA
GTTGCCCATTTACGAGCCCGGCTTGGATGAGGTGGTGAAGAAGTGCCGCA
ATGTGAACCTCTTCTTCTCAACGGACATCGAGACGGCCATCAAGGAGGCG
GACCTCATCTTCATCTCGGTGAACACGCCCACAAAAACCTGCGGCAATGG
CAAGGGCCGAGCGGCGGACCTCAAGTACGTGGAGAGCGCAGCGCGGATGA
TCGCCGAGATCGCGCAGTCCAACAAGATTGTGGTGGAGAAGAGCACGGTG
CCCGTGCGGGCGGCGGAGAGCATCATGCACATACTGCGAGCGAACCAGAA
GCCGGGCATCCACTACGACATACTGTCCAATCCCGAGTTCCTCGCCGAGG
GCACCGCCATCAATGACCTGCTAAATGCGGATCGTGTGCTGATCGGCGGC
GAGGAGACGCCCGAGGGCCACCAGGCGGTGGAGAAGCTGTCGTGGATCTA
CGAGCACTGGATACCCAAGCAGAACATACTCACGACGAACACGTGGAGCA
GCGAGCTGTCTAAGCTGGCGGCCAACGCATTCCTCGCCCAGCGAATCTCC
AGCATCAATTCGCTGTCGGCAGTGTGCGAGGCCACGGGCGCAGATGTTTC
CGAGGTGGCGAGGGCCGTGGGTCTAGACTCTCGCATCGGGTTCAAGTTCC
TGCAG
BO03884.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:55:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10072-PA | 1431 | sgl-RA | 1..789 | 17..805 | 3895 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:58:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sgl-RA | 2275 | CG10072-RA | 209..1001 | 13..805 | 3920 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:58:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6960828..6961328 | 805..305 | 2475 | 99.6 | Minus |
3L | 28110227 | 3L | 6964397..6964550 | 166..13 | 755 | 99.4 | Minus |
3L | 28110227 | 3L | 6961810..6961951 | 306..165 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:58:20 has no hits.
BO03884.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:50:16 Download gff for
BO03884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sgl-PA | 1..789 | 17..805 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:57:19 Download gff for
BO03884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10072-PA | 1..789 | 17..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:39:04 Download gff for
BO03884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sgl-RA | 206..1001 | 9..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:20:52 Download gff for
BO03884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sgl-RA | 206..1001 | 9..805 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:20:52 Download gff for
BO03884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6960828..6961327 | 306..805 | 99 | <- | Minus |
3L | 6961811..6961949 | 167..305 | 100 | <- | Minus |
3L | 6964397..6964553 | 9..166 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:39:04 Download gff for
BO03884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6953928..6954427 | 306..805 | 99 | <- | Minus |
arm_3L | 6954911..6955049 | 167..305 | 100 | <- | Minus |
arm_3L | 6957497..6957653 | 9..166 | 98 | | Minus |
BO03884.complete Sequence
1465 bp (1465 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629591
> BO03884.complete
GAAGTTATCAGTCGACATGAAGGTCTGCTGCATTGGCGCTGGTTATGTCG
GCGGTCCGACCTGCGCGGTTATGGCGCTCAAATGCCCCGATATCGTGATA
ACTCTGGTGGACAAGAGCTCCGAGCGGATTGCCCAGTGGAATTCGGATAA
GTTGCCCATTTACGAGCCCGGCTTGGATGAGGTGGTGAAGAAGTGCCGCA
ATGTGAACCTCTTCTTCTCAACGGACATCGAGACGGCCATCAAGGAGGCG
GACCTCATCTTCATCTCGGTGAACACGCCCACAAAAACCTGCGGCAATGG
CAAGGGCCGAGCGGCGGACCTCAAGTACGTGGAGAGCGCAGCGCGGATGA
TCGCCGAGATCGCGCAGTCCAACAAGATTGTGGTGGAGAAGAGCACGGTG
CCCGTGCGGGCGGCGGAGAGCATCATGCACATACTGCGAGCGAACCAGAA
GCCGGGCATCCACTACGACATACTGTCCAATCCCGAGTTCCTCGCCGAGG
GCACCGCCATCAATGACCTGCTAAATGCGGATCGTGTGCTGATCGGCGGC
GAGGAGACGCCCGAGGGCCACCAGGCGGTGGAGAAGCTGTCGTGGATCTA
CGAGCACTGGATACCCAAGCAGAACATACTCACGACGAACACGTGGAGCA
GCGAGCTGTCTAAGCTGGCGGCCAACGCATTCCTCGCCCAGCGAATCTCC
AGCATCAATTCGCTGTCGGCAGTGTGCGAGGCCACGGGCGCAGATGTTTC
CGAGGTGGCGAGGGCCGTGGGTCTAGACTCTCGCATCGGTTCCAAGTTCC
TGCAGGCGTCGGTGGGCTTCGGCGGCAGTTGCTTTCAGAAGGACATCCTC
AATCTGATTTACATCTGCGAGAACCTCAATCTGCCCGAGGTGGCCGCCTA
CTGGCAGCAGGTGATCGACATGAATGAGTACCAGAAGCGTCGATTCTCGC
AGAAAATCATCGAGAGTCTGTTCAACACGGTGTCGGACAAGCGGATAGCG
ATCCTGGGCTTTGCCTTCAAGAAGAATACGGGCGATACGCGCGAAACAGC
CGCCATTACCGTGTGCCAAACTCTGCTGGAGGAGGGCGCCGCGCTGGATA
TCTACGATCCGAAGGTGGAACCCGAGCAGATCATCGATGACCTCACGCAT
CCCAGTGTCACGGAATCGCCGGAGAAGGTGAAGAAGGCGGTGCAGATCCA
CAGTGATCCGTACAGCGCAGTGCGTGCCACACATGCGTTGGTCATCTGCA
CGGAGTGGGATGAGTTTGTTGATCTGGACTTTAAGCGCATATACCAATCG
ATGATGAAGCCAGCCTACATCTTCGACGGCCGCAAGATTCTCGACCACGA
GCGCCTGCAGCAGATCGGCTTCCACGTCCAGACCATCGGCAAGAAGTACC
AGCGCACCGGACTGCTCCGCTCGTGGGGCATTGTGCCGCAGCTTAAGGCA
AGCTTTCTAGACCAT
BO03884.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:34:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sgl-RA | 1431 | CG10072-PA | 1..1428 | 17..1444 | 7140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:34:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sgl-RA | 2275 | CG10072-RA | 209..1645 | 13..1449 | 7155 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:34:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6960184..6961328 | 1449..305 | 5710 | 99.9 | Minus |
3L | 28110227 | 3L | 6964397..6964550 | 166..13 | 755 | 99.4 | Minus |
3L | 28110227 | 3L | 6961810..6961951 | 306..165 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:34:56 has no hits.
BO03884.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:43:47 Download gff for
BO03884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sgl-RA | 1..1431 | 17..1447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:14:02 Download gff for
BO03884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sgl-RA | 250..1691 | 9..1453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:13 Download gff for
BO03884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sgl-RA | 213..1645 | 17..1449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:43:47 Download gff for
BO03884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sgl-RA | 250..1691 | 9..1453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:23 Download gff for
BO03884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sgl-RA | 213..1645 | 17..1449 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:23 Download gff for
BO03884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6960184..6961327 | 306..1449 | 99 | <- | Minus |
3L | 6961811..6961949 | 167..305 | 100 | <- | Minus |
3L | 6964397..6964546 | 17..166 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:13 Download gff for
BO03884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6953284..6954427 | 306..1449 | 99 | <- | Minus |
arm_3L | 6954911..6955049 | 167..305 | 100 | <- | Minus |
arm_3L | 6957497..6957646 | 17..166 | 100 | | Minus |
BO03884.pep Sequence
Translation from 16 to 1465
> BO03884.pep
MKVCCIGAGYVGGPTCAVMALKCPDIVITLVDKSSERIAQWNSDKLPIYE
PGLDEVVKKCRNVNLFFSTDIETAIKEADLIFISVNTPTKTCGNGKGRAA
DLKYVESAARMIAEIAQSNKIVVEKSTVPVRAAESIMHILRANQKPGIHY
DILSNPEFLAEGTAINDLLNADRVLIGGEETPEGHQAVEKLSWIYEHWIP
KQNILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVARA
VGLDSRIGSKFLQASVGFGGSCFQKDILNLIYICENLNLPEVAAYWQQVI
DMNEYQKRRFSQKIIESLFNTVSDKRIAILGFAFKKNTGDTRETAAITVC
QTLLEEGAALDIYDPKVEPEQIIDDLTHPSVTESPEKVKKAVQIHSDPYS
AVRATHALVICTEWDEFVDLDFKRIYQSMMKPAYIFDGRKILDHERLQQI
GFHVQTIGKKYQRTGLLRSWGIVPQLKASFLDH
BO03884.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:17:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sgl-PA | 476 | CG10072-PA | 1..476 | 1..476 | 2454 | 100 | Plus |