Clone BO03921 Report

Search the DGRC for BO03921

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:39
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptM6-RA
Protein status:BO03921.pep:
Sequenced Size:979

Clone Sequence Records

BO03921.3prime Sequence

797 bp (743 high quality bases) assembled on 2005-12-01

> BO03921.3prime
ATGGTCTAGAAAGCTTGCCTTGAAGCGATCCTTCGAGGTGGCACTGTACT
CCAGCTCGTTCAGGTTCTGGATCTCCTGTAGCTCCTGGAACTTTTCGTGG
TCCCGAATGTGGGCGTAGTTAGCAGACAGGCACATCAGGTAGTGGACCAG
ACTGAGCAGCACCAAAAGGGTGGACAGAGTGGCCAATATAAACATCACCT
CGGCGTTCTCAACACCGTCTTTGCAGAATGCCTTTATCTCGTACTTTTCG
CAGACCTTCATGTCCTCCAGTTTCGTGTTTGGCGGGAACATAAAATGGAA
TTGCGTCAGATCAATGCAGCTTTGAGAGTGCTCAACACTGGTGCACATGT
TCCAGAACATGGTGTAGATGAAGGTAACCACTACCAGGAAACAAAGGATC
AGACTCCACACAAAGTTTAGCAGGTAGGTTATCCCCATAAGGACGGCGCA
CGAGATTCGCCCACCCACTCGCGACCGCCACGCCCGGTAAACCTTGTATC
TGGTGGCTCCGGTGGCCAGAAATCCGACGAACAGGATCATAAATCCGAGG
GCGGCCATGCCCGCTCCAATTATTACGAAAATCATTTGCACAGCTTCGAT
CCATATCAGGCGTAGGTGGAAAACCTGGTCAACCATTATAACGGTGAGAG
AGGCTCCTCGGTACATGGTGAAGCAGAAGATTCCTACTCCCAGGAGACAC
ATCAGAGTGGCTATCAGGGTGGCGTAGGGAATACGCGCCATGCAGGATTG
GCAGCATTCTCCTTCGCCTCCGCGCTCCGTGTACCTGTCCAAGGAGT

BO03921.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7540-PA 945 M6-RA 167..942 797..22 3880 100 Minus
CG7540-PB 945 M6-RB 167..942 797..22 3880 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
M6-RF 2370 CG7540-RF 790..1569 797..18 3885 99.9 Minus
M6-RC 2174 CG7540-RC 594..1373 797..18 3885 99.9 Minus
M6-RB 1945 CG7540-RB 365..1144 797..18 3885 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:23:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21511308..21511613 602..297 1530 100 Minus
3L 28110227 3L 21511670..21511948 296..18 1380 99.6 Minus
3L 28110227 3L 21511089..21511251 763..601 815 100 Minus
3L 28110227 3L 21510245..21510281 797..761 185 100 Minus
Blast to na_te.dros performed on 2015-02-13 05:23:52 has no hits.

BO03921.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:50:49 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:58:07 Download gff for BO03921.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7540-PB 167..945 19..797 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:52:18 Download gff for BO03921.3prime
Subject Subject Range Query Range Percent Splice Strand
M6-RB 365..1153 9..797 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:54:49 Download gff for BO03921.3prime
Subject Subject Range Query Range Percent Splice Strand
M6-RB 365..1153 9..797 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:54:49 Download gff for BO03921.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21510245..21510280 762..797 100 -> Minus
3L 21511091..21511250 602..761 100 -> Minus
3L 21511309..21511613 297..601 100 -> Minus
3L 21511670..21511957 9..296 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:52:18 Download gff for BO03921.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21503345..21503380 762..797 100 -> Minus
arm_3L 21504191..21504350 602..761 100 -> Minus
arm_3L 21504409..21504713 297..601 100 -> Minus
arm_3L 21504770..21505057 9..296 98   Minus

BO03921.5prime Sequence

778 bp (730 high quality bases) assembled on 2005-12-01

> BO03921.5prime
GAAGTTATCAGTCGACATGCCGGGCAAGGGGAACAACCGCGATCGCATCC
GGGATCCCCGCGAGGAGATCCTGCTCGAGACGAACTTTGAGGACGACGGC
GGAGTCCTGACGCGCGCCTACAACGGAAATCCGTATAACCCGACCATCCA
GAACCGTCGGCGCAACTCGTACCGCTCGGATCACTCCTTGGACAGGTACA
CGGAGCGCGGAGGCGAAGGAGAATGCTGCCAATCCTGCATGGCGCGTATT
CCCTACGCCACCCTGATAGCCACTCTGATGTGTCTCCTGGGAGTAGGAAT
CTTCTGCTTCACCATGTACCGAGGAGCCTCTCTCACCGTTATAATGGTTG
ACCAGGTTTTCCACCTACGCCTGATATGGATCGAAGCTGTGCAAATGATT
TTCGTAATAATTGGAGCGGGCATGGCCGCCCTCGGATTTATGATCCTGTT
CGTCGGATTTCTGGCCACCGGAGCCACCAGATACAAGGTTTACCGGGCGT
GGCGGTCGCGAGTGGGTGGGCGAATCTCGTGCGCCGTCCTTATGGGGATA
ACCTACCTGCTAAACTTTGTGTGGAGTCTGATCCTTTGTTTCCTGGTAGT
GGTTACCTTCATCTACACCATGTTCTGGAACATGTGCACCAGTGTTGAGC
ACTCTCAAAGCTGCATTGATCTGACGCAATTCCATTTTATGTTCCCGCCA
AACACGAAACTGGAGGACATGAAGGTCTGCGAAAAGTACGAGATAAAGGC
ATTCTGCAAAGACGGTGTTGAGAACGCC

BO03921.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7540-PA 945 M6-RA 1..762 17..778 3810 100 Plus
CG7540-PB 945 M6-RB 1..762 17..778 3810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
M6-RF 2370 CG7540-RF 624..1385 17..778 3810 100 Plus
M6-RC 2174 CG7540-RC 428..1189 17..778 3810 100 Plus
M6-RB 1945 CG7540-RB 199..960 17..778 3810 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21511308..21511613 378..683 1530 100 Plus
3L 28110227 3L 21510079..21510281 17..219 1015 100 Plus
3L 28110227 3L 21511089..21511251 217..379 815 100 Plus
3L 28110227 3L 21511670..21511764 684..778 475 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:37:18 has no hits.

BO03921.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:50:50 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:58:09 Download gff for BO03921.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7540-PB 1..762 17..778 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:10:58 Download gff for BO03921.5prime
Subject Subject Range Query Range Percent Splice Strand
M6-RB 195..960 9..778 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:44:55 Download gff for BO03921.5prime
Subject Subject Range Query Range Percent Splice Strand
M6-RB 195..960 9..778 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:44:55 Download gff for BO03921.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21511091..21511250 219..378 100 -> Plus
3L 21511309..21511613 379..683 100 -> Plus
3L 21511670..21511764 684..778 100   Plus
3L 21510075..21510280 9..218 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:10:58 Download gff for BO03921.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21503175..21503380 9..218 98 -> Plus
arm_3L 21504191..21504350 219..378 100 -> Plus
arm_3L 21504409..21504713 379..683 100 -> Plus
arm_3L 21504770..21504864 684..778 100   Plus

BO03921.complete Sequence

979 bp (979 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629592

> BO03921.complete
GAAGTTATCAGTCGACATGCCGGGCAAGGGGAACAACCGCGATCGCATCC
GGGATCCCCGCGAGGAGATCCTGCTCGAGACGAACTTTGAGGACGACGGC
GGAGTCCTGACGCGCGCCTACAACGGAAATCCGTATAACCCGACCATCCA
GAACCGTCGGCGCAACTCGTACCGCTCGGATCACTCCTTGGACAGGTACA
CGGAGCGCGGAGGCGAAGGAGAATGCTGCCAATCCTGCATGGCGCGTATT
CCCTACGCCACCCTGATAGCCACTCTGATGTGTCTCCTGGGAGTAGGAAT
CTTCTGCTTCACCATGTACCGAGGAGCCTCTCTCACCGTTATAATGGTTG
ACCAGGTTTTCCACCTACGCCTGATATGGATCGAAGCTGTGCAAATGATT
TTCGTAATAATTGGAGCGGGCATGGCCGCCCTCGGATTTATGATCCTGTT
CGTCGGATTTCTGGCCACCGGAGCCACCAGATACAAGGTTTACCGGGCGT
GGCGGTCGCGAGTGGGTGGGCGAATCTCGTGCGCCGTCCTTATGGGGATA
ACCTACCTGCTAAACTTTGTGTGGAGTCTGATCCTTTGTTTCCTGGTAGT
GGTTACCTTCATCTACACCATGTTCTGGAACATGTGCACCAGTGTTGAGC
ACTCTCAAAGCTGCATTGATCTGACGCAATTCCATTTTATGTTCCCGCCA
AACACGAAACTGGAGGACATGAAGGTCTGCGAAAAGTACGAGATAAAGGC
ATTCTGCAAAGACGGTGTTGAGAACGCCGAGGTGATGTTTATATTGGCCA
CTCTGTCCACCCTTTTGGTGCTGCTCAGTCTGGTCCACTACCTGATGTGC
CTGTCTGCTAACTACGCCCACATTCGGGACCACGAAAAGTTCCAGGAGCT
ACAGGAGATCCAGAACCTGAACGAGCTGGAGTACAGTGCCACCTCGAAGG
ATCGCTTCAAGGCAAGCTTTCTAGACCAT

BO03921.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
M6-RF 1107 CG7540-PF 163..1104 17..958 4710 100 Plus
M6-RC 960 CG7540-PC 16..957 17..958 4710 100 Plus
M6-RB 945 CG7540-PB 1..942 17..958 4710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:50:37
Subject Length Description Subject Range Query Range Score Percent Strand
M6-RF 2370 CG7540-RF 624..1569 17..962 4715 99.9 Plus
M6-RC 2174 CG7540-RC 428..1373 17..962 4715 99.9 Plus
M6-RB 1945 CG7540-RB 199..1144 17..962 4715 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21511308..21511613 378..683 1530 100 Plus
3L 28110227 3L 21511670..21511948 684..962 1380 99.6 Plus
3L 28110227 3L 21510079..21510281 17..219 1015 100 Plus
3L 28110227 3L 21511089..21511251 217..379 815 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:50:35 has no hits.

BO03921.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:43:40 Download gff for BO03921.complete
Subject Subject Range Query Range Percent Splice Strand
M6-RB 1..945 17..961 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:13:51 Download gff for BO03921.complete
Subject Subject Range Query Range Percent Splice Strand
M6-RB 195..1143 9..961 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:34 Download gff for BO03921.complete
Subject Subject Range Query Range Percent Splice Strand
M6-RB 199..1144 17..963 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:43:40 Download gff for BO03921.complete
Subject Subject Range Query Range Percent Splice Strand
M6-RB 195..1143 9..961 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:59 Download gff for BO03921.complete
Subject Subject Range Query Range Percent Splice Strand
M6-RB 199..1144 17..963 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:59 Download gff for BO03921.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21510079..21510280 17..218 100 -> Plus
3L 21511091..21511250 219..378 100 -> Plus
3L 21511309..21511613 379..683 100 -> Plus
3L 21511670..21511948 684..963 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:34 Download gff for BO03921.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21504409..21504713 379..683 100 -> Plus
arm_3L 21503179..21503380 17..218 100 -> Plus
arm_3L 21504191..21504350 219..378 100 -> Plus
arm_3L 21504770..21505048 684..963 99   Plus

BO03921.pep Sequence

Translation from 16 to 979

> BO03921.pep
MPGKGNNRDRIRDPREEILLETNFEDDGGVLTRAYNGNPYNPTIQNRRRN
SYRSDHSLDRYTERGGEGECCQSCMARIPYATLIATLMCLLGVGIFCFTM
YRGASLTVIMVDQVFHLRLIWIEAVQMIFVIIGAGMAALGFMILFVGFLA
TGATRYKVYRAWRSRVGGRISCAVLMGITYLLNFVWSLILCFLVVVTFIY
TMFWNMCTSVEHSQSCIDLTQFHFMFPPNTKLEDMKVCEKYEIKAFCKDG
VENAEVMFILATLSTLLVLLSLVHYLMCLSANYAHIRDHEKFQELQEIQN
LNELEYSATSKDRFKASFLDH

BO03921.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
M6-PB 314 CG7540-PB 1..314 1..314 1659 100 Plus
M6-PC 319 CG7540-PC 6..319 1..314 1659 100 Plus
M6-PF 368 CG7540-PF 55..368 1..314 1659 100 Plus
M6-PE 297 CG7540-PE 44..297 61..314 1305 98 Plus
M6-PD 248 CG7540-PD 2..248 68..314 1295 100 Plus