Clone Sequence Records
BO03921.3prime Sequence
797 bp (743 high quality bases) assembled on 2005-12-01
> BO03921.3prime
ATGGTCTAGAAAGCTTGCCTTGAAGCGATCCTTCGAGGTGGCACTGTACT
CCAGCTCGTTCAGGTTCTGGATCTCCTGTAGCTCCTGGAACTTTTCGTGG
TCCCGAATGTGGGCGTAGTTAGCAGACAGGCACATCAGGTAGTGGACCAG
ACTGAGCAGCACCAAAAGGGTGGACAGAGTGGCCAATATAAACATCACCT
CGGCGTTCTCAACACCGTCTTTGCAGAATGCCTTTATCTCGTACTTTTCG
CAGACCTTCATGTCCTCCAGTTTCGTGTTTGGCGGGAACATAAAATGGAA
TTGCGTCAGATCAATGCAGCTTTGAGAGTGCTCAACACTGGTGCACATGT
TCCAGAACATGGTGTAGATGAAGGTAACCACTACCAGGAAACAAAGGATC
AGACTCCACACAAAGTTTAGCAGGTAGGTTATCCCCATAAGGACGGCGCA
CGAGATTCGCCCACCCACTCGCGACCGCCACGCCCGGTAAACCTTGTATC
TGGTGGCTCCGGTGGCCAGAAATCCGACGAACAGGATCATAAATCCGAGG
GCGGCCATGCCCGCTCCAATTATTACGAAAATCATTTGCACAGCTTCGAT
CCATATCAGGCGTAGGTGGAAAACCTGGTCAACCATTATAACGGTGAGAG
AGGCTCCTCGGTACATGGTGAAGCAGAAGATTCCTACTCCCAGGAGACAC
ATCAGAGTGGCTATCAGGGTGGCGTAGGGAATACGCGCCATGCAGGATTG
GCAGCATTCTCCTTCGCCTCCGCGCTCCGTGTACCTGTCCAAGGAGT
BO03921.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:55:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7540-PA | 945 | M6-RA | 167..942 | 797..22 | 3880 | 100 | Minus |
CG7540-PB | 945 | M6-RB | 167..942 | 797..22 | 3880 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:23:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
M6-RF | 2370 | CG7540-RF | 790..1569 | 797..18 | 3885 | 99.9 | Minus |
M6-RC | 2174 | CG7540-RC | 594..1373 | 797..18 | 3885 | 99.9 | Minus |
M6-RB | 1945 | CG7540-RB | 365..1144 | 797..18 | 3885 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:23:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21511308..21511613 | 602..297 | 1530 | 100 | Minus |
3L | 28110227 | 3L | 21511670..21511948 | 296..18 | 1380 | 99.6 | Minus |
3L | 28110227 | 3L | 21511089..21511251 | 763..601 | 815 | 100 | Minus |
3L | 28110227 | 3L | 21510245..21510281 | 797..761 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:23:52 has no hits.
BO03921.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:50:49 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:58:07 Download gff for
BO03921.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7540-PB | 167..945 | 19..797 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:52:18 Download gff for
BO03921.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
M6-RB | 365..1153 | 9..797 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:54:49 Download gff for
BO03921.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
M6-RB | 365..1153 | 9..797 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:54:49 Download gff for
BO03921.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21510245..21510280 | 762..797 | 100 | -> | Minus |
3L | 21511091..21511250 | 602..761 | 100 | -> | Minus |
3L | 21511309..21511613 | 297..601 | 100 | -> | Minus |
3L | 21511670..21511957 | 9..296 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:52:18 Download gff for
BO03921.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21503345..21503380 | 762..797 | 100 | -> | Minus |
arm_3L | 21504191..21504350 | 602..761 | 100 | -> | Minus |
arm_3L | 21504409..21504713 | 297..601 | 100 | -> | Minus |
arm_3L | 21504770..21505057 | 9..296 | 98 | | Minus |
BO03921.5prime Sequence
778 bp (730 high quality bases) assembled on 2005-12-01
> BO03921.5prime
GAAGTTATCAGTCGACATGCCGGGCAAGGGGAACAACCGCGATCGCATCC
GGGATCCCCGCGAGGAGATCCTGCTCGAGACGAACTTTGAGGACGACGGC
GGAGTCCTGACGCGCGCCTACAACGGAAATCCGTATAACCCGACCATCCA
GAACCGTCGGCGCAACTCGTACCGCTCGGATCACTCCTTGGACAGGTACA
CGGAGCGCGGAGGCGAAGGAGAATGCTGCCAATCCTGCATGGCGCGTATT
CCCTACGCCACCCTGATAGCCACTCTGATGTGTCTCCTGGGAGTAGGAAT
CTTCTGCTTCACCATGTACCGAGGAGCCTCTCTCACCGTTATAATGGTTG
ACCAGGTTTTCCACCTACGCCTGATATGGATCGAAGCTGTGCAAATGATT
TTCGTAATAATTGGAGCGGGCATGGCCGCCCTCGGATTTATGATCCTGTT
CGTCGGATTTCTGGCCACCGGAGCCACCAGATACAAGGTTTACCGGGCGT
GGCGGTCGCGAGTGGGTGGGCGAATCTCGTGCGCCGTCCTTATGGGGATA
ACCTACCTGCTAAACTTTGTGTGGAGTCTGATCCTTTGTTTCCTGGTAGT
GGTTACCTTCATCTACACCATGTTCTGGAACATGTGCACCAGTGTTGAGC
ACTCTCAAAGCTGCATTGATCTGACGCAATTCCATTTTATGTTCCCGCCA
AACACGAAACTGGAGGACATGAAGGTCTGCGAAAAGTACGAGATAAAGGC
ATTCTGCAAAGACGGTGTTGAGAACGCC
BO03921.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:55:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7540-PA | 945 | M6-RA | 1..762 | 17..778 | 3810 | 100 | Plus |
CG7540-PB | 945 | M6-RB | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:37:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
M6-RF | 2370 | CG7540-RF | 624..1385 | 17..778 | 3810 | 100 | Plus |
M6-RC | 2174 | CG7540-RC | 428..1189 | 17..778 | 3810 | 100 | Plus |
M6-RB | 1945 | CG7540-RB | 199..960 | 17..778 | 3810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:37:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21511308..21511613 | 378..683 | 1530 | 100 | Plus |
3L | 28110227 | 3L | 21510079..21510281 | 17..219 | 1015 | 100 | Plus |
3L | 28110227 | 3L | 21511089..21511251 | 217..379 | 815 | 100 | Plus |
3L | 28110227 | 3L | 21511670..21511764 | 684..778 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:37:18 has no hits.
BO03921.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 01:50:50 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:58:09 Download gff for
BO03921.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7540-PB | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:10:58 Download gff for
BO03921.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
M6-RB | 195..960 | 9..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:44:55 Download gff for
BO03921.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
M6-RB | 195..960 | 9..778 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:44:55 Download gff for
BO03921.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21511091..21511250 | 219..378 | 100 | -> | Plus |
3L | 21511309..21511613 | 379..683 | 100 | -> | Plus |
3L | 21511670..21511764 | 684..778 | 100 | | Plus |
3L | 21510075..21510280 | 9..218 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:10:58 Download gff for
BO03921.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21503175..21503380 | 9..218 | 98 | -> | Plus |
arm_3L | 21504191..21504350 | 219..378 | 100 | -> | Plus |
arm_3L | 21504409..21504713 | 379..683 | 100 | -> | Plus |
arm_3L | 21504770..21504864 | 684..778 | 100 | | Plus |
BO03921.complete Sequence
979 bp (979 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629592
> BO03921.complete
GAAGTTATCAGTCGACATGCCGGGCAAGGGGAACAACCGCGATCGCATCC
GGGATCCCCGCGAGGAGATCCTGCTCGAGACGAACTTTGAGGACGACGGC
GGAGTCCTGACGCGCGCCTACAACGGAAATCCGTATAACCCGACCATCCA
GAACCGTCGGCGCAACTCGTACCGCTCGGATCACTCCTTGGACAGGTACA
CGGAGCGCGGAGGCGAAGGAGAATGCTGCCAATCCTGCATGGCGCGTATT
CCCTACGCCACCCTGATAGCCACTCTGATGTGTCTCCTGGGAGTAGGAAT
CTTCTGCTTCACCATGTACCGAGGAGCCTCTCTCACCGTTATAATGGTTG
ACCAGGTTTTCCACCTACGCCTGATATGGATCGAAGCTGTGCAAATGATT
TTCGTAATAATTGGAGCGGGCATGGCCGCCCTCGGATTTATGATCCTGTT
CGTCGGATTTCTGGCCACCGGAGCCACCAGATACAAGGTTTACCGGGCGT
GGCGGTCGCGAGTGGGTGGGCGAATCTCGTGCGCCGTCCTTATGGGGATA
ACCTACCTGCTAAACTTTGTGTGGAGTCTGATCCTTTGTTTCCTGGTAGT
GGTTACCTTCATCTACACCATGTTCTGGAACATGTGCACCAGTGTTGAGC
ACTCTCAAAGCTGCATTGATCTGACGCAATTCCATTTTATGTTCCCGCCA
AACACGAAACTGGAGGACATGAAGGTCTGCGAAAAGTACGAGATAAAGGC
ATTCTGCAAAGACGGTGTTGAGAACGCCGAGGTGATGTTTATATTGGCCA
CTCTGTCCACCCTTTTGGTGCTGCTCAGTCTGGTCCACTACCTGATGTGC
CTGTCTGCTAACTACGCCCACATTCGGGACCACGAAAAGTTCCAGGAGCT
ACAGGAGATCCAGAACCTGAACGAGCTGGAGTACAGTGCCACCTCGAAGG
ATCGCTTCAAGGCAAGCTTTCTAGACCAT
BO03921.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:50:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
M6-RF | 1107 | CG7540-PF | 163..1104 | 17..958 | 4710 | 100 | Plus |
M6-RC | 960 | CG7540-PC | 16..957 | 17..958 | 4710 | 100 | Plus |
M6-RB | 945 | CG7540-PB | 1..942 | 17..958 | 4710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:50:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
M6-RF | 2370 | CG7540-RF | 624..1569 | 17..962 | 4715 | 99.9 | Plus |
M6-RC | 2174 | CG7540-RC | 428..1373 | 17..962 | 4715 | 99.9 | Plus |
M6-RB | 1945 | CG7540-RB | 199..1144 | 17..962 | 4715 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:50:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21511308..21511613 | 378..683 | 1530 | 100 | Plus |
3L | 28110227 | 3L | 21511670..21511948 | 684..962 | 1380 | 99.6 | Plus |
3L | 28110227 | 3L | 21510079..21510281 | 17..219 | 1015 | 100 | Plus |
3L | 28110227 | 3L | 21511089..21511251 | 217..379 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:50:35 has no hits.
BO03921.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:43:40 Download gff for
BO03921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
M6-RB | 1..945 | 17..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:13:51 Download gff for
BO03921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
M6-RB | 195..1143 | 9..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:34 Download gff for
BO03921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
M6-RB | 199..1144 | 17..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:43:40 Download gff for
BO03921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
M6-RB | 195..1143 | 9..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:59 Download gff for
BO03921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
M6-RB | 199..1144 | 17..963 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:59 Download gff for
BO03921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21510079..21510280 | 17..218 | 100 | -> | Plus |
3L | 21511091..21511250 | 219..378 | 100 | -> | Plus |
3L | 21511309..21511613 | 379..683 | 100 | -> | Plus |
3L | 21511670..21511948 | 684..963 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:34 Download gff for
BO03921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21504409..21504713 | 379..683 | 100 | -> | Plus |
arm_3L | 21503179..21503380 | 17..218 | 100 | -> | Plus |
arm_3L | 21504191..21504350 | 219..378 | 100 | -> | Plus |
arm_3L | 21504770..21505048 | 684..963 | 99 | | Plus |
BO03921.pep Sequence
Translation from 16 to 979
> BO03921.pep
MPGKGNNRDRIRDPREEILLETNFEDDGGVLTRAYNGNPYNPTIQNRRRN
SYRSDHSLDRYTERGGEGECCQSCMARIPYATLIATLMCLLGVGIFCFTM
YRGASLTVIMVDQVFHLRLIWIEAVQMIFVIIGAGMAALGFMILFVGFLA
TGATRYKVYRAWRSRVGGRISCAVLMGITYLLNFVWSLILCFLVVVTFIY
TMFWNMCTSVEHSQSCIDLTQFHFMFPPNTKLEDMKVCEKYEIKAFCKDG
VENAEVMFILATLSTLLVLLSLVHYLMCLSANYAHIRDHEKFQELQEIQN
LNELEYSATSKDRFKASFLDH
BO03921.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
M6-PB | 314 | CG7540-PB | 1..314 | 1..314 | 1659 | 100 | Plus |
M6-PC | 319 | CG7540-PC | 6..319 | 1..314 | 1659 | 100 | Plus |
M6-PF | 368 | CG7540-PF | 55..368 | 1..314 | 1659 | 100 | Plus |
M6-PE | 297 | CG7540-PE | 44..297 | 61..314 | 1305 | 98 | Plus |
M6-PD | 248 | CG7540-PD | 2..248 | 68..314 | 1295 | 100 | Plus |