Clone BO03931 Report

Search the DGRC for BO03931

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:39
Well:31
Vector:pDNR-Dual
Associated Gene/Transcriptfz3-RA
Protein status:BO03931.pep: validated full length
Sequenced Size:1780

Clone Sequence Records

BO03931.3prime Sequence

723 bp (677 high quality bases) assembled on 2005-12-01

> BO03931.3prime
ATGGTCTAGAAAGCTTGCCTTAACTCTCGATTGGTTGGGGTTGTAGACGG
GCACATTGTGAAAACTAATACCAGCATATAGAGGAGTGATTCCCCCCGTG
GGCAGCATGGATTTCCCACTCGTATACAAATGCTTTTTGGGCAAAGCCCC
GGCCGCCTTGCTTTGATTCATCAGGGATGAGGTGGGTGTGCCGCTGGCAC
CCAGCCGATTTCTGTAGCTCTCGCAGGTTTTGCGCGACCACACCCACAAC
CCTGTCAACGTTCCGCCCACCAGCTGGAAGAAGATCCGGACCAACGCTGG
CCAGGCACTGAGCGGAGTGGGTGAGAGGCAGTCATCGGGTGTGGAGCAGC
TGGGCACTGAATCCGCGTACCGCTCGCAAAGAGCCGCCACGACGCCGGCG
GTCGTGGGTGCGAAGTACAGCAGGGAGAAGAGCACAAAGCGCTTCCGGAT
CTGCCCGAATCGGTGGTGGGCCAGGGTGGGCTGCAACTGTTGCTGCAGGG
AGAGCAGAGACCTGGAGGCTCTCAGGGTGAAGTACAGCCCAAGCAGGAGC
AGGACCAGTGCTGGCAGCTCCACAAATCCCGGTGCGTAGCACATCCCAGT
CAGCTCACTCGGACGCACCTTCTCCAGCAGCAGGGCGGCAATGGGGGGCG
CCAGCGGTGGCACCCAGGCCAGAACGTGGAACAGCCCGGACCTCTTTTCC
AGCGCCTCGCTGGACCACTTTTT

BO03931.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG16785-PA 1746 fz3-RA 1042..1743 723..22 3510 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:31:13
Subject Length Description Subject Range Query Range Score Percent Strand
fz3-RC 3250 CG16785-RC 1326..2031 723..18 3515 99.9 Minus
fz3-RB 2304 CG16785-RB 1300..2005 723..18 3515 99.9 Minus
fz3-RA 2249 CG16785-RA 1245..1950 723..18 3515 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 782298..783003 723..18 3515 99.9 Minus
Blast to na_te.dros performed on 2015-02-11 17:31:09 has no hits.

BO03931.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:51:02 Download gff for BO03931.3prime
Subject Subject Range Query Range Percent Splice Strand
fz3-PA 1042..1746 19..723 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:58:28 Download gff for BO03931.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16785-PA 1042..1746 19..723 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:31:32 Download gff for BO03931.3prime
Subject Subject Range Query Range Percent Splice Strand
fz3-RA 1245..1961 6..723 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:50 Download gff for BO03931.3prime
Subject Subject Range Query Range Percent Splice Strand
fz3-RA 1245..1961 6..723 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:50 Download gff for BO03931.3prime
Subject Subject Range Query Range Percent Splice Strand
X 782298..783014 6..723 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:31:32 Download gff for BO03931.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 676331..677047 6..723 99   Minus

BO03931.5prime Sequence

708 bp (706 high quality bases) assembled on 2005-12-01

> BO03931.5prime
GAAGTTATCAGTCGACATGTATGCCGCCTCGATCCTGATCCTGCACCTGA
CTTGGGCCGTGGCCACGATCGCGGCCAACGGTGCCGGCCATAATGGCCCG
GTGGCATCCGGAGCAGGGCCTAACGGATTGCAGTGCCAGCCCATCGCCGT
GTCCGCCTGCCAAGGCCTCGGCTACAACATGACCGCACTGCCCAACCTGG
CAGGTCACACCAATCAGCTGGAGGCTGAGCTCCAGATTGCCAAACTGGTG
CCACTAATAGAATCCGGCTGCTCGCGTCGCGCCCGCTTTTTGCTCTGCTC
GTCTCTGTTTCCGCTGTGCACGCCGGATGTGCCACGCCCCGTTGCCGCCT
GCAAATTGCTGTGCGAGACTGTTAGGGGCGAGTGTATGGAAAACGCTCCG
CCGGAACTGATGGAGCTGTGGCCTTCGTTCCTTAACTGCGACGGACTGCC
GCAGCCGGAGAAGCACGAGTTGTGCATGCAGATTCCACAGGAGGTGGCTG
TGCCAGGCGGGAGTCCAAGTGGTCCGCCCACCACTGGTTCACCTGGCGTC
GAAGATCACCCGCAGACGTACCGCTTTTGGAAAAGCGGAGCATCTCCCAC
CTCTGACTTGGCTGGCGTCTTGTGCCCGCAAAACTTTAGCGGCAGTCCCT
TTAATCCGGAGGAGTGCGTGCCCCAGTGTCAGCGGGACGCCTTCCACACG
AGCTCTCA

BO03931.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG16785-PA 1746 fz3-RA 1..692 17..708 3460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
fz3-RC 3250 CG16785-RC 285..976 17..708 3460 100 Plus
fz3-RA 2249 CG16785-RA 204..895 17..708 3460 100 Plus
fz3-RB 2304 CG16785-RB 474..950 232..708 2385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 781473..781948 233..708 2380 100 Plus
X 23542271 X 770229..770447 17..235 1095 100 Plus
Blast to na_te.dros performed on 2015-02-13 13:00:40 has no hits.

BO03931.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:51:03 Download gff for BO03931.5prime
Subject Subject Range Query Range Percent Splice Strand
fz3-PA 1..691 17..707 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:58:29 Download gff for BO03931.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16785-PA 1..691 17..707 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:39:20 Download gff for BO03931.5prime
Subject Subject Range Query Range Percent Splice Strand
fz3-RA 197..894 9..707 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:27:03 Download gff for BO03931.5prime
Subject Subject Range Query Range Percent Splice Strand
fz3-RA 197..894 9..707 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:27:03 Download gff for BO03931.5prime
Subject Subject Range Query Range Percent Splice Strand
X 770222..770447 9..235 98 -> Plus
X 781476..781947 236..707 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:39:20 Download gff for BO03931.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 664255..664480 9..235 98 -> Plus
arm_X 675509..675980 236..707 100   Plus

BO03931.complete Sequence

1780 bp assembled on 2006-10-10

GenBank Submission: FJ629593

> BO03931.complete
GAAGTTATCAGTCGACATGTATGCCGCCTCGATCCTGATCCTGCACCTGA
CTTGGGCCGTGGCCACGATCGCGGCCAACGGTGCCGGCCATAATGGCCCG
GTGGCATCCGGAGCAGGGCCTAACGGATTGCAGTGCCAGCCCATCGCCGT
GTCCGCCTGCCAAGGCCTCGGCTACAACATGACCGCACTGCCCAACCTGG
CAGGTCACACCAATCAGCTGGAGGCTGAGCTCCAGATTGCCAAACTGGTG
CCACTAATAGAATCCGGCTGCTCGCGTCGCGCCCGCTTTTTGCTCTGCTC
GTCTCTGTTTCCGCTGTGCACGCCGGATGTGCCACGCCCCGTTGCCGCCT
GCAAATTGCTGTGCGAGACTGTTAGGGGCGAGTGTATGGAAAACGCTCCG
CCGGAACTGATGGAGCTGTGGCCTTCGTTCCTTAACTGCGACGGACTGCC
GCAGCCGGAGAAGCACGAGTTGTGCATGCAGATTCCACAGGAGGTGGCTG
TGCCAGGCGGGAGTCCAAGTGGTCCGCCCACCACTGGTTCACCTGGCGTC
GAAGATCACCCGCAGACGTACCGCTTTTGGAAAAGCGGAGCATCTCCCAC
CTCTGACTTGGCTGGCGTCTTGTGCCCGCAAAACTTTAGCGGCAGTCCCT
TTAATCCGGAGGAGTGCGTGCCCCAGTGTCAGCGGGACGCCTTCCACACG
AGCTCTCAGAAGAAGACGTCTGAGACCCTCATTCTAGGCCTCTCGGCCGT
CTGCTTCGTCCTGACACTGTTCGCCTTGGTGACCTTCTGGGCGGAGCCCA
CCAGGTTTGGCTACCCCGAGAGACCAGTGCTCTTCCTGTGCCTGTGCTAC
AACCTCTTCAGCGTGTGCTATCTGGAGCGAATCGTGTTCCACAATCAAGC
AAGGATGCATGACGTCGAGCTGCAATGGCGGCTGATGCGACCGGGTTGCT
TGCTGACGCCCCCTTGCCTGGCCTCCTACATAACCACCTCCTATTTAAGC
CTGTGTGCAGCCAGCTGGTGGCTGATATTTGCCCTGTGCTTCTACCTGTC
CTCCCACAAAAAGTGGTCCAGCGAGGCGCTGGAAAAGAGGTCCGGGCTGT
TCCACGTTCTGGCCTGGGTGCCACCGCTGGCGCCCCCCATTGCCGCCCTG
CTGCTGGAGAAGGTGCGTCCGAGTGAGCTGACTGGGATGTGCTACGCACC
GGGATTTGTGGAGCTGCCAGCACTGGTCCTGCTCCTGCTTGGGCTGTACT
TCACCCTGAGAGCCTCCAGGTCTCTGCTCTCCCTGCAGCAACAGTTGCAG
CCCACCCTGGCCCACCACCGATTCGGGCAGATCCGGAAGCGCTTTGTGCT
CTTCTCCCTGCTGTACTTCGCACCCACGACCGCCGGCGTCGTGGCGGCTC
TTTGCGAGCGGTACGCGGATTCAGTGCCCAGCTGCTCCACACCCGATGAC
TGCCTCTCACCCACTCCGCTCAGTGCCTGGCCAGCGTTGGTCCGGATCTT
CTTCCAGCTGGTGGGCGGAACGTTGACAGGGTTGTGGGTGTGGTCGCGCA
AAACCTGCGAGAGCTACAGAAATCGGCTGGGTGCCAGCGGCACACCCACC
TCATCCCTGATGAATCAAAGCAAGGCGGCCGGGGCTTTGCCCAAAAAGCA
TTTGTATACGAGTGGGAAATCCATGCTGCCCACGGGGGGAATCACTCCTC
TATATGCTGGTATTAGTTTTCACAATGTGCCCGTCTACAACCCCAACCAA
TCGAGAGTTAAGGCAAGCTTTCTAGACCAT

BO03931.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
fz3-RC 1746 CG16785-PC 1..1743 17..1759 8715 100 Plus
fz3-RA 1746 CG16785-PA 1..1743 17..1759 8715 100 Plus
fz3-RB 1941 CG16785-PB 411..1938 232..1759 7640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
fz3-RC 3250 CG16785-RC 285..2031 17..1763 8720 99.9 Plus
fz3-RA 2249 CG16785-RA 204..1950 17..1763 8720 99.9 Plus
fz3-RB 2304 CG16785-RB 474..2005 232..1763 7645 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 781473..783003 233..1763 7640 99.9 Plus
X 23542271 X 770229..770447 17..235 1095 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:24:28 has no hits.

BO03931.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:50 Download gff for BO03931.complete
Subject Subject Range Query Range Percent Splice Strand
fz3-RA 1..1746 17..1762 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:52:43 Download gff for BO03931.complete
Subject Subject Range Query Range Percent Splice Strand
fz3-RA 202..1948 17..1764 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:34 Download gff for BO03931.complete
Subject Subject Range Query Range Percent Splice Strand
fz3-RA 204..1950 17..1764 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:50 Download gff for BO03931.complete
Subject Subject Range Query Range Percent Splice Strand
fz3-RA 195..1959 9..1775 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:45 Download gff for BO03931.complete
Subject Subject Range Query Range Percent Splice Strand
fz3-RA 204..1950 17..1764 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:45 Download gff for BO03931.complete
Subject Subject Range Query Range Percent Splice Strand
X 770229..770447 17..235 100 -> Plus
X 781476..783003 236..1764 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:34 Download gff for BO03931.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 664262..664480 17..235 100 -> Plus
arm_X 675509..677036 236..1764 99   Plus

BO03931.pep Sequence

Translation from 16 to 1780

> BO03931.pep
MYAASILILHLTWAVATIAANGAGHNGPVASGAGPNGLQCQPIAVSACQG
LGYNMTALPNLAGHTNQLEAELQIAKLVPLIESGCSRRARFLLCSSLFPL
CTPDVPRPVAACKLLCETVRGECMENAPPELMELWPSFLNCDGLPQPEKH
ELCMQIPQEVAVPGGSPSGPPTTGSPGVEDHPQTYRFWKSGASPTSDLAG
VLCPQNFSGSPFNPEECVPQCQRDAFHTSSQKKTSETLILGLSAVCFVLT
LFALVTFWAEPTRFGYPERPVLFLCLCYNLFSVCYLERIVFHNQARMHDV
ELQWRLMRPGCLLTPPCLASYITTSYLSLCAASWWLIFALCFYLSSHKKW
SSEALEKRSGLFHVLAWVPPLAPPIAALLLEKVRPSELTGMCYAPGFVEL
PALVLLLLGLYFTLRASRSLLSLQQQLQPTLAHHRFGQIRKRFVLFSLLY
FAPTTAGVVAALCERYADSVPSCSTPDDCLSPTPLSAWPALVRIFFQLVG
GTLTGLWVWSRKTCESYRNRLGASGTPTSSLMNQSKAAGALPKKHLYTSG
KSMLPTGGITPLYAGISFHNVPVYNPNQSRVKASFLDH

BO03931.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
fz3-PC 581 CG16785-PC 1..581 1..581 3118 100 Plus
fz3-PA 581 CG16785-PA 1..581 1..581 3118 100 Plus
fz3-PB 646 CG16785-PB 138..646 73..581 2741 100 Plus
fz2-PG 694 CG9739-PG 45..654 19..557 550 27.5 Plus
fz2-PE 694 CG9739-PE 45..654 19..557 550 27.5 Plus