Clone Sequence Records
BO03931.3prime Sequence
723 bp (677 high quality bases) assembled on 2005-12-01
> BO03931.3prime
ATGGTCTAGAAAGCTTGCCTTAACTCTCGATTGGTTGGGGTTGTAGACGG
GCACATTGTGAAAACTAATACCAGCATATAGAGGAGTGATTCCCCCCGTG
GGCAGCATGGATTTCCCACTCGTATACAAATGCTTTTTGGGCAAAGCCCC
GGCCGCCTTGCTTTGATTCATCAGGGATGAGGTGGGTGTGCCGCTGGCAC
CCAGCCGATTTCTGTAGCTCTCGCAGGTTTTGCGCGACCACACCCACAAC
CCTGTCAACGTTCCGCCCACCAGCTGGAAGAAGATCCGGACCAACGCTGG
CCAGGCACTGAGCGGAGTGGGTGAGAGGCAGTCATCGGGTGTGGAGCAGC
TGGGCACTGAATCCGCGTACCGCTCGCAAAGAGCCGCCACGACGCCGGCG
GTCGTGGGTGCGAAGTACAGCAGGGAGAAGAGCACAAAGCGCTTCCGGAT
CTGCCCGAATCGGTGGTGGGCCAGGGTGGGCTGCAACTGTTGCTGCAGGG
AGAGCAGAGACCTGGAGGCTCTCAGGGTGAAGTACAGCCCAAGCAGGAGC
AGGACCAGTGCTGGCAGCTCCACAAATCCCGGTGCGTAGCACATCCCAGT
CAGCTCACTCGGACGCACCTTCTCCAGCAGCAGGGCGGCAATGGGGGGCG
CCAGCGGTGGCACCCAGGCCAGAACGTGGAACAGCCCGGACCTCTTTTCC
AGCGCCTCGCTGGACCACTTTTT
BO03931.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:55:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16785-PA | 1746 | fz3-RA | 1042..1743 | 723..22 | 3510 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:31:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fz3-RC | 3250 | CG16785-RC | 1326..2031 | 723..18 | 3515 | 99.9 | Minus |
fz3-RB | 2304 | CG16785-RB | 1300..2005 | 723..18 | 3515 | 99.9 | Minus |
fz3-RA | 2249 | CG16785-RA | 1245..1950 | 723..18 | 3515 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:31:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 782298..783003 | 723..18 | 3515 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:31:09 has no hits.
BO03931.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:51:02 Download gff for
BO03931.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fz3-PA | 1042..1746 | 19..723 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:58:28 Download gff for
BO03931.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16785-PA | 1042..1746 | 19..723 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:31:32 Download gff for
BO03931.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fz3-RA | 1245..1961 | 6..723 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:50 Download gff for
BO03931.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fz3-RA | 1245..1961 | 6..723 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:50 Download gff for
BO03931.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 782298..783014 | 6..723 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:31:32 Download gff for
BO03931.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 676331..677047 | 6..723 | 99 | | Minus |
BO03931.5prime Sequence
708 bp (706 high quality bases) assembled on 2005-12-01
> BO03931.5prime
GAAGTTATCAGTCGACATGTATGCCGCCTCGATCCTGATCCTGCACCTGA
CTTGGGCCGTGGCCACGATCGCGGCCAACGGTGCCGGCCATAATGGCCCG
GTGGCATCCGGAGCAGGGCCTAACGGATTGCAGTGCCAGCCCATCGCCGT
GTCCGCCTGCCAAGGCCTCGGCTACAACATGACCGCACTGCCCAACCTGG
CAGGTCACACCAATCAGCTGGAGGCTGAGCTCCAGATTGCCAAACTGGTG
CCACTAATAGAATCCGGCTGCTCGCGTCGCGCCCGCTTTTTGCTCTGCTC
GTCTCTGTTTCCGCTGTGCACGCCGGATGTGCCACGCCCCGTTGCCGCCT
GCAAATTGCTGTGCGAGACTGTTAGGGGCGAGTGTATGGAAAACGCTCCG
CCGGAACTGATGGAGCTGTGGCCTTCGTTCCTTAACTGCGACGGACTGCC
GCAGCCGGAGAAGCACGAGTTGTGCATGCAGATTCCACAGGAGGTGGCTG
TGCCAGGCGGGAGTCCAAGTGGTCCGCCCACCACTGGTTCACCTGGCGTC
GAAGATCACCCGCAGACGTACCGCTTTTGGAAAAGCGGAGCATCTCCCAC
CTCTGACTTGGCTGGCGTCTTGTGCCCGCAAAACTTTAGCGGCAGTCCCT
TTAATCCGGAGGAGTGCGTGCCCCAGTGTCAGCGGGACGCCTTCCACACG
AGCTCTCA
BO03931.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:55:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16785-PA | 1746 | fz3-RA | 1..692 | 17..708 | 3460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:00:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fz3-RC | 3250 | CG16785-RC | 285..976 | 17..708 | 3460 | 100 | Plus |
fz3-RA | 2249 | CG16785-RA | 204..895 | 17..708 | 3460 | 100 | Plus |
fz3-RB | 2304 | CG16785-RB | 474..950 | 232..708 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:00:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 781473..781948 | 233..708 | 2380 | 100 | Plus |
X | 23542271 | X | 770229..770447 | 17..235 | 1095 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:00:40 has no hits.
BO03931.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:51:03 Download gff for
BO03931.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fz3-PA | 1..691 | 17..707 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:58:29 Download gff for
BO03931.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16785-PA | 1..691 | 17..707 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:39:20 Download gff for
BO03931.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fz3-RA | 197..894 | 9..707 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:27:03 Download gff for
BO03931.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fz3-RA | 197..894 | 9..707 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:27:03 Download gff for
BO03931.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 770222..770447 | 9..235 | 98 | -> | Plus |
X | 781476..781947 | 236..707 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:39:20 Download gff for
BO03931.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 664255..664480 | 9..235 | 98 | -> | Plus |
arm_X | 675509..675980 | 236..707 | 100 | | Plus |
BO03931.complete Sequence
1780 bp assembled on 2006-10-10
GenBank Submission: FJ629593
> BO03931.complete
GAAGTTATCAGTCGACATGTATGCCGCCTCGATCCTGATCCTGCACCTGA
CTTGGGCCGTGGCCACGATCGCGGCCAACGGTGCCGGCCATAATGGCCCG
GTGGCATCCGGAGCAGGGCCTAACGGATTGCAGTGCCAGCCCATCGCCGT
GTCCGCCTGCCAAGGCCTCGGCTACAACATGACCGCACTGCCCAACCTGG
CAGGTCACACCAATCAGCTGGAGGCTGAGCTCCAGATTGCCAAACTGGTG
CCACTAATAGAATCCGGCTGCTCGCGTCGCGCCCGCTTTTTGCTCTGCTC
GTCTCTGTTTCCGCTGTGCACGCCGGATGTGCCACGCCCCGTTGCCGCCT
GCAAATTGCTGTGCGAGACTGTTAGGGGCGAGTGTATGGAAAACGCTCCG
CCGGAACTGATGGAGCTGTGGCCTTCGTTCCTTAACTGCGACGGACTGCC
GCAGCCGGAGAAGCACGAGTTGTGCATGCAGATTCCACAGGAGGTGGCTG
TGCCAGGCGGGAGTCCAAGTGGTCCGCCCACCACTGGTTCACCTGGCGTC
GAAGATCACCCGCAGACGTACCGCTTTTGGAAAAGCGGAGCATCTCCCAC
CTCTGACTTGGCTGGCGTCTTGTGCCCGCAAAACTTTAGCGGCAGTCCCT
TTAATCCGGAGGAGTGCGTGCCCCAGTGTCAGCGGGACGCCTTCCACACG
AGCTCTCAGAAGAAGACGTCTGAGACCCTCATTCTAGGCCTCTCGGCCGT
CTGCTTCGTCCTGACACTGTTCGCCTTGGTGACCTTCTGGGCGGAGCCCA
CCAGGTTTGGCTACCCCGAGAGACCAGTGCTCTTCCTGTGCCTGTGCTAC
AACCTCTTCAGCGTGTGCTATCTGGAGCGAATCGTGTTCCACAATCAAGC
AAGGATGCATGACGTCGAGCTGCAATGGCGGCTGATGCGACCGGGTTGCT
TGCTGACGCCCCCTTGCCTGGCCTCCTACATAACCACCTCCTATTTAAGC
CTGTGTGCAGCCAGCTGGTGGCTGATATTTGCCCTGTGCTTCTACCTGTC
CTCCCACAAAAAGTGGTCCAGCGAGGCGCTGGAAAAGAGGTCCGGGCTGT
TCCACGTTCTGGCCTGGGTGCCACCGCTGGCGCCCCCCATTGCCGCCCTG
CTGCTGGAGAAGGTGCGTCCGAGTGAGCTGACTGGGATGTGCTACGCACC
GGGATTTGTGGAGCTGCCAGCACTGGTCCTGCTCCTGCTTGGGCTGTACT
TCACCCTGAGAGCCTCCAGGTCTCTGCTCTCCCTGCAGCAACAGTTGCAG
CCCACCCTGGCCCACCACCGATTCGGGCAGATCCGGAAGCGCTTTGTGCT
CTTCTCCCTGCTGTACTTCGCACCCACGACCGCCGGCGTCGTGGCGGCTC
TTTGCGAGCGGTACGCGGATTCAGTGCCCAGCTGCTCCACACCCGATGAC
TGCCTCTCACCCACTCCGCTCAGTGCCTGGCCAGCGTTGGTCCGGATCTT
CTTCCAGCTGGTGGGCGGAACGTTGACAGGGTTGTGGGTGTGGTCGCGCA
AAACCTGCGAGAGCTACAGAAATCGGCTGGGTGCCAGCGGCACACCCACC
TCATCCCTGATGAATCAAAGCAAGGCGGCCGGGGCTTTGCCCAAAAAGCA
TTTGTATACGAGTGGGAAATCCATGCTGCCCACGGGGGGAATCACTCCTC
TATATGCTGGTATTAGTTTTCACAATGTGCCCGTCTACAACCCCAACCAA
TCGAGAGTTAAGGCAAGCTTTCTAGACCAT
BO03931.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:24:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fz3-RC | 1746 | CG16785-PC | 1..1743 | 17..1759 | 8715 | 100 | Plus |
fz3-RA | 1746 | CG16785-PA | 1..1743 | 17..1759 | 8715 | 100 | Plus |
fz3-RB | 1941 | CG16785-PB | 411..1938 | 232..1759 | 7640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:24:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fz3-RC | 3250 | CG16785-RC | 285..2031 | 17..1763 | 8720 | 99.9 | Plus |
fz3-RA | 2249 | CG16785-RA | 204..1950 | 17..1763 | 8720 | 99.9 | Plus |
fz3-RB | 2304 | CG16785-RB | 474..2005 | 232..1763 | 7645 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:24:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 781473..783003 | 233..1763 | 7640 | 99.9 | Plus |
X | 23542271 | X | 770229..770447 | 17..235 | 1095 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:24:28 has no hits.
BO03931.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:50 Download gff for
BO03931.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fz3-RA | 1..1746 | 17..1762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:52:43 Download gff for
BO03931.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fz3-RA | 202..1948 | 17..1764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:34 Download gff for
BO03931.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fz3-RA | 204..1950 | 17..1764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:50 Download gff for
BO03931.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fz3-RA | 195..1959 | 9..1775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:45 Download gff for
BO03931.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fz3-RA | 204..1950 | 17..1764 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:45 Download gff for
BO03931.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 770229..770447 | 17..235 | 100 | -> | Plus |
X | 781476..783003 | 236..1764 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:34 Download gff for
BO03931.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 664262..664480 | 17..235 | 100 | -> | Plus |
arm_X | 675509..677036 | 236..1764 | 99 | | Plus |
BO03931.pep Sequence
Translation from 16 to 1780
> BO03931.pep
MYAASILILHLTWAVATIAANGAGHNGPVASGAGPNGLQCQPIAVSACQG
LGYNMTALPNLAGHTNQLEAELQIAKLVPLIESGCSRRARFLLCSSLFPL
CTPDVPRPVAACKLLCETVRGECMENAPPELMELWPSFLNCDGLPQPEKH
ELCMQIPQEVAVPGGSPSGPPTTGSPGVEDHPQTYRFWKSGASPTSDLAG
VLCPQNFSGSPFNPEECVPQCQRDAFHTSSQKKTSETLILGLSAVCFVLT
LFALVTFWAEPTRFGYPERPVLFLCLCYNLFSVCYLERIVFHNQARMHDV
ELQWRLMRPGCLLTPPCLASYITTSYLSLCAASWWLIFALCFYLSSHKKW
SSEALEKRSGLFHVLAWVPPLAPPIAALLLEKVRPSELTGMCYAPGFVEL
PALVLLLLGLYFTLRASRSLLSLQQQLQPTLAHHRFGQIRKRFVLFSLLY
FAPTTAGVVAALCERYADSVPSCSTPDDCLSPTPLSAWPALVRIFFQLVG
GTLTGLWVWSRKTCESYRNRLGASGTPTSSLMNQSKAAGALPKKHLYTSG
KSMLPTGGITPLYAGISFHNVPVYNPNQSRVKASFLDH
BO03931.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fz3-PC | 581 | CG16785-PC | 1..581 | 1..581 | 3118 | 100 | Plus |
fz3-PA | 581 | CG16785-PA | 1..581 | 1..581 | 3118 | 100 | Plus |
fz3-PB | 646 | CG16785-PB | 138..646 | 73..581 | 2741 | 100 | Plus |
fz2-PG | 694 | CG9739-PG | 45..654 | 19..557 | 550 | 27.5 | Plus |
fz2-PE | 694 | CG9739-PE | 45..654 | 19..557 | 550 | 27.5 | Plus |