Clone BO03940 Report

Search the DGRC for BO03940

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:39
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptMad-RA
Protein status:BO03940.pep:
Sequenced Size:1402

Clone Sequence Records

BO03940.3prime Sequence

742 bp (716 high quality bases) assembled on 2005-12-01

> BO03940.3prime
ATGGTCTAGAAAGCTTGCTTTGGATACCGAACTAATTGCATTATGCGGAG
AGCCCATTTGGGTGAGCACCTTGTCCAGCCACTGGAGCGGCCCGTGCAGA
TGGATTTCAATCCAACAGGGCGTCGAGGTCACATCCTGGCGATGATACTC
CGCACCCCAGCCCTTCACGAACGACATCCGGATCGTGCACATCTTTGTCA
GCTCGTAGACGGCCTCGAATCCATTGTTCACCGACTGCGACAGCAGCTGA
GCAAATTCCTGATTGTTGAAGATCTTCAGCGAGCAGCCCGGCGGTATTTT
GCACACGGTGCTCGGATGGAATCCGTGGTGGTAGTTGCAGTTGCGCGACT
GCACGAAAATGGCGGAGTCGGATAGGCATTCGGCGTAGACCTCGCCGGTC
ACATAGTATAAATGAACACCCTTGCCTATATGACGGCGTGTGTTCTCGAT
GGTGCTATTCCTGTTCACGTTGCTCAGCTGGCCGAGACAGCAGCGGTCCG
AGTTGTTGGAAGGATTCGTGAAACCGTCAACGATCACGGAGTTGTTGTTG
CAGTGGAACACCTCGCCCACGCGGCAATTTAGCTCGTAGTAGGCTATCGA
CGCCCAGAAGGCGGGCTCCGAATAGCTAACCTGGGCAACATCGCCCATCT
GAGCATCCAGCAGCTGGCCACCGTCGTTCGGATTGTTGGAGTTGCCATCC
TCCGAGGGACTGTAGGCGGGTGGCGGTGTTCCCGCCCAGCTG

BO03940.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12399-PA 1368 Mad-RA 645..1365 742..22 3580 99.8 Minus
CG2262-PA 1461 Smox-RA 1348..1406 132..74 170 91.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:31:36
Subject Length Description Subject Range Query Range Score Percent Strand
Mad-RB 3262 CG12399-RB 1176..1901 742..17 3600 99.7 Minus
Mad-RA 2691 CG12399-RA 1001..1726 742..17 3600 99.7 Minus
Smox-RB 4521 CG2262-RB 2041..2306 318..53 550 80.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3147417..3147827 17..427 2040 99.8 Plus
2L 23513712 2L 3148046..3148363 425..742 1575 99.7 Plus
X 23542271 X 8139256..8139521 53..318 550 80.5 Plus
Blast to na_te.dros performed on 2015-02-11 17:31:33 has no hits.

BO03940.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:51:19 Download gff for BO03940.3prime
Subject Subject Range Query Range Percent Splice Strand
Mad-PA 645..1368 19..742 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:58:52 Download gff for BO03940.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12399-PA 645..1368 19..742 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:31:33 Download gff for BO03940.3prime
Subject Subject Range Query Range Percent Splice Strand
Mad-RA 1001..1726 17..742 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:12:41 Download gff for BO03940.3prime
Subject Subject Range Query Range Percent Splice Strand
Mad-RA 1001..1726 17..742 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:12:41 Download gff for BO03940.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3147418..3147825 18..425 99 <- Plus
2L 3148047..3148363 426..742 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:31:33 Download gff for BO03940.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3147418..3147825 18..425 99 <- Plus
arm_2L 3148047..3148363 426..742 99   Plus

BO03940.5prime Sequence

730 bp (711 high quality bases) assembled on 2005-12-01

> BO03940.5prime
GAAGTTATCAGTCGACATGGACACCGACGATGTGGAATCGAACACAAGCA
GCGCGATGTCCACACTGGGCTCGCTATTCTCCTTCACATCGCCGGCGGTG
AAGAAGCTGCTGGGCTGGAAACAGGGTGACGAAGAGGAGAAGTGGGCGGA
GAAGGCCGTCGACAGTCTGGTGAAGAAGTTGAAGAAGCGCAAGGGCGCCA
TCGAGGAGCTGGAGCGTGCGCTCTCCTGTCCCGGTCAGCCCTCGAAGTGT
GTCACCATTCCACGCTCGCTGGACGGACGATTACAGGTCTCCCATCGCAA
GGGTCTGCCGCATGTGATCTACTGCCGCGTGTGGCGCTGGCCAGATCTGC
AGTCGCACCACGAACTGAAGCCACTCGAGCTGTGCCAGTATCCGTTCAGC
GCCAAGCAGAAGGAGGTGTGCATCAATCCGTATCACTATAAGCGCGTGGA
GAGTCCGGTGCTCCCGCCAGTACTCGTTCCTCGCCACTCGGAATTCGCGC
CCGGTCACTCGATGCTGCAGTTCAACCATGTGGCCGAGCCCAGTATGCCG
CACAATGTGAGCTACTCGAACAGTGGATTCAACTCGCACAGCTTGAGCAC
CAGCAACACATCGGTGGGCAGTCCGAGTTCCGTCAACTCCAATCCCAATT
CGCCGTACGACAGCTTGGCGGGAACACCGCCACCCGCCTACAGTCCCTCG
GAGGATGGCAACTCCAACAATCCGAACGAC

BO03940.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12399-PA 1368 Mad-RA 1..714 17..730 3570 100 Plus
CG2262-PA 1461 Smox-RA 232..284 296..348 140 90.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
Mad-RB 3262 CG12399-RB 532..1245 17..730 3570 100 Plus
Mad-RA 2691 CG12399-RA 357..1070 17..730 3570 100 Plus
Smox-RB 4521 CG2262-RB 1111..1193 296..378 205 83.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3148294..3148740 730..284 2235 100 Minus
2L 23513712 2L 3148802..3149073 288..17 1360 100 Minus
X 23542271 X 8140369..8140451 378..296 205 83.1 Minus
Blast to na_te.dros performed on 2015-02-12 00:59:34 has no hits.

BO03940.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:51:20 Download gff for BO03940.5prime
Subject Subject Range Query Range Percent Splice Strand
Mad-PA 1..714 17..730 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:58:53 Download gff for BO03940.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12399-PA 1..714 17..730 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:36:21 Download gff for BO03940.5prime
Subject Subject Range Query Range Percent Splice Strand
Mad-RA 350..1070 9..730 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:45:07 Download gff for BO03940.5prime
Subject Subject Range Query Range Percent Splice Strand
Mad-RA 350..1070 9..730 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:45:07 Download gff for BO03940.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3148294..3148737 287..730 100 <- Minus
2L 3148804..3149077 9..286 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:36:21 Download gff for BO03940.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3148294..3148737 287..730 100 <- Minus
arm_2L 3148804..3149077 9..286 98   Minus

BO03940.complete Sequence

1402 bp (1402 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ629594

> BO03940.complete
GAAGTTATCAGTCGACATGGACACCGACGATGTGGAATCGAACACAAGCA
GCGCGATGTCCACACTGGGCTCGCTATTCTCCTTCACATCGCCGGCGGTG
AAGAAGCTGCTGGGCTGGAAACAGGGTGACGAAGAGGAGAAGTGGGCGGA
GAAGGCCGTCGACAGTCTGGTGAAGAAGTTGAAGAAGCGCAAGGGCGCCA
TCGAGGAGCTGGAGCGTGCGCTCTCCTGTCCCGGTCAGCCCTCGAAGTGT
GTCACCATTCCACGCTCGCTGGACGGACGATTACAGGTCTCCCATCGCAA
GGGTCTGCCGCATGTGATCTACTGCCGCGTGTGGCGCTGGCCAGATCTGC
AGTCGCACCACGAACTGAAGCCACTCGAGCTGTGCCAGTATCCGTTCAGC
GCCAAGCAGAAGGAGGTGTGCATCAATCCGTATCACTATAAGCGCGTGGA
GAGTCCGGTGCTCCCGCCAGTACTCGTTCCTCGCCACTCGGAATTCGCGC
CCGGTCACTCGATGCTGCAGTTCAACCATGTGGCCGAGCCCAGTATGCCG
CACAATGTGAGCTACTCGAACAGTGGATTCAACTCGCACAGCTTGAGCAC
CAGCAACACATCGGTGGGCAGTCCGAGTTCCGTCAACTCCAATCCCAATT
CGCCGTACGACAGCTTGGCGGGAACACCGCCACCCGCCTACAGTCCCTCG
GAGGATGGCAACTCCAACAATCCGAACGACGGTGGCCAGCTGCTGGATGC
TCAGATGGGCGATGTTGCCCAGGTTAGCTATTCGGAGCCCGCCTTCTGGG
CGTCGATAGCCTACTACGAGCTAAATTGCCGCGTGGGCGAGGTGTTCCAC
TGCAACAACAACTCCGTGATCGTTGACGGTTTCACGAATCCTTCCAACAA
CTCGGACCGCTGCTGTCTCGGCCAGCTGAGCAACGTGAACAGGAATAGCA
CCATCGAGAACACACGCCGTCATATAGGCAAGGGTGTTCATTTATACTAT
GTGACCGGCGAGGTCTACGCCGAATGCCTATCCGACTCCGCCATTTTCGT
GCAGTCGCGCAACTGCAACTACCACCACGGATTCCATCCGAGCACCGTGT
GCAAAATACCGCCGGGCTGCTCGCTGAAGATCTTCAACAATCAGGAATTT
GCTCAGCTGCTGTCGCAGTCGGTGAACAATGGATTCGAGGCCGTCTACGA
GCTGACAAAGATGTGCACGATCCGGATGTCGTTCGTGAAGGGCTGGGGTG
CGGAGTATCATCGCCAGGATGTGACCTCGACGCCCTGTTGGATTGAAATC
CATCTGCACGGGCCGCTCCAGTGGCTGGACAAGGTGCTCACCCAAATGGG
CTCTCCGCATAATGCAATTAGTTCGGTATCCAAAGCAAGCTTTCTAGACC
AT

BO03940.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
Mad-RB 1578 CG12399-PB 211..1575 17..1381 6825 100 Plus
Mad-RA 1368 CG12399-PA 1..1365 17..1381 6825 100 Plus
Smox-RB 1461 CG2262-PB 1162..1427 1085..1350 550 80.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
Mad-RB 3262 CG12399-RB 532..1901 17..1386 6835 99.9 Plus
Mad-RA 2691 CG12399-RA 357..1726 17..1386 6835 99.9 Plus
Smox-RB 4521 CG2262-RB 2041..2306 1085..1350 550 80.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3148046..3148740 978..284 3475 100 Minus
2L 23513712 2L 3147417..3147827 1386..976 2040 99.8 Minus
2L 23513712 2L 3148802..3149073 288..17 1360 100 Minus
X 23542271 X 8139256..8139521 1350..1085 550 80.5 Minus
X 23542271 X 8140369..8140451 378..296 205 83.1 Minus
Blast to na_te.dros performed on 2014-11-28 08:36:29 has no hits.

BO03940.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:43:31 Download gff for BO03940.complete
Subject Subject Range Query Range Percent Splice Strand
Mad-RA 1..1368 17..1384 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:59:50 Download gff for BO03940.complete
Subject Subject Range Query Range Percent Splice Strand
Mad-RA 344..1713 17..1386 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:53 Download gff for BO03940.complete
Subject Subject Range Query Range Percent Splice Strand
Mad-RA 357..1726 17..1386 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:43:31 Download gff for BO03940.complete
Subject Subject Range Query Range Percent Splice Strand
Mad-RA 337..1713 9..1386 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:27 Download gff for BO03940.complete
Subject Subject Range Query Range Percent Splice Strand
Mad-RA 357..1726 17..1386 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:27 Download gff for BO03940.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3147417..3147825 978..1386 99 <- Minus
2L 3148047..3148737 287..977 100 <- Minus
2L 3148804..3149073 17..286 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:53 Download gff for BO03940.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3147417..3147825 978..1386 99 <- Minus
arm_2L 3148047..3148737 287..977 100 <- Minus
arm_2L 3148804..3149073 17..286 100   Minus

BO03940.pep Sequence

Translation from 16 to 1402

> BO03940.pep
MDTDDVESNTSSAMSTLGSLFSFTSPAVKKLLGWKQGDEEEKWAEKAVDS
LVKKLKKRKGAIEELERALSCPGQPSKCVTIPRSLDGRLQVSHRKGLPHV
IYCRVWRWPDLQSHHELKPLELCQYPFSAKQKEVCINPYHYKRVESPVLP
PVLVPRHSEFAPGHSMLQFNHVAEPSMPHNVSYSNSGFNSHSLSTSNTSV
GSPSSVNSNPNSPYDSLAGTPPPAYSPSEDGNSNNPNDGGQLLDAQMGDV
AQVSYSEPAFWASIAYYELNCRVGEVFHCNNNSVIVDGFTNPSNNSDRCC
LGQLSNVNRNSTIENTRRHIGKGVHLYYVTGEVYAECLSDSAIFVQSRNC
NYHHGFHPSTVCKIPPGCSLKIFNNQEFAQLLSQSVNNGFEAVYELTKMC
TIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPHNA
ISSVSKASFLDH

BO03940.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
Mad-PB 525 CG12399-PB 71..525 1..455 2468 100 Plus
Mad-PA 455 CG12399-PA 1..455 1..455 2468 100 Plus
Smox-PB 486 CG2262-PB 1..486 20..455 1261 53 Plus
Smox-PA 486 CG2262-PA 1..486 20..455 1261 53 Plus
Med-PB 697 CG1775-PB 381..688 174..444 371 33.5 Plus