Clone Sequence Records
BO03940.3prime Sequence
742 bp (716 high quality bases) assembled on 2005-12-01
> BO03940.3prime
ATGGTCTAGAAAGCTTGCTTTGGATACCGAACTAATTGCATTATGCGGAG
AGCCCATTTGGGTGAGCACCTTGTCCAGCCACTGGAGCGGCCCGTGCAGA
TGGATTTCAATCCAACAGGGCGTCGAGGTCACATCCTGGCGATGATACTC
CGCACCCCAGCCCTTCACGAACGACATCCGGATCGTGCACATCTTTGTCA
GCTCGTAGACGGCCTCGAATCCATTGTTCACCGACTGCGACAGCAGCTGA
GCAAATTCCTGATTGTTGAAGATCTTCAGCGAGCAGCCCGGCGGTATTTT
GCACACGGTGCTCGGATGGAATCCGTGGTGGTAGTTGCAGTTGCGCGACT
GCACGAAAATGGCGGAGTCGGATAGGCATTCGGCGTAGACCTCGCCGGTC
ACATAGTATAAATGAACACCCTTGCCTATATGACGGCGTGTGTTCTCGAT
GGTGCTATTCCTGTTCACGTTGCTCAGCTGGCCGAGACAGCAGCGGTCCG
AGTTGTTGGAAGGATTCGTGAAACCGTCAACGATCACGGAGTTGTTGTTG
CAGTGGAACACCTCGCCCACGCGGCAATTTAGCTCGTAGTAGGCTATCGA
CGCCCAGAAGGCGGGCTCCGAATAGCTAACCTGGGCAACATCGCCCATCT
GAGCATCCAGCAGCTGGCCACCGTCGTTCGGATTGTTGGAGTTGCCATCC
TCCGAGGGACTGTAGGCGGGTGGCGGTGTTCCCGCCCAGCTG
BO03940.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:56:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12399-PA | 1368 | Mad-RA | 645..1365 | 742..22 | 3580 | 99.8 | Minus |
CG2262-PA | 1461 | Smox-RA | 1348..1406 | 132..74 | 170 | 91.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:31:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mad-RB | 3262 | CG12399-RB | 1176..1901 | 742..17 | 3600 | 99.7 | Minus |
Mad-RA | 2691 | CG12399-RA | 1001..1726 | 742..17 | 3600 | 99.7 | Minus |
Smox-RB | 4521 | CG2262-RB | 2041..2306 | 318..53 | 550 | 80.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:31:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3147417..3147827 | 17..427 | 2040 | 99.8 | Plus |
2L | 23513712 | 2L | 3148046..3148363 | 425..742 | 1575 | 99.7 | Plus |
X | 23542271 | X | 8139256..8139521 | 53..318 | 550 | 80.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:31:33 has no hits.
BO03940.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:51:19 Download gff for
BO03940.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mad-PA | 645..1368 | 19..742 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:58:52 Download gff for
BO03940.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12399-PA | 645..1368 | 19..742 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:31:33 Download gff for
BO03940.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mad-RA | 1001..1726 | 17..742 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:12:41 Download gff for
BO03940.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mad-RA | 1001..1726 | 17..742 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:12:41 Download gff for
BO03940.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3147418..3147825 | 18..425 | 99 | <- | Plus |
2L | 3148047..3148363 | 426..742 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:31:33 Download gff for
BO03940.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3147418..3147825 | 18..425 | 99 | <- | Plus |
arm_2L | 3148047..3148363 | 426..742 | 99 | | Plus |
BO03940.5prime Sequence
730 bp (711 high quality bases) assembled on 2005-12-01
> BO03940.5prime
GAAGTTATCAGTCGACATGGACACCGACGATGTGGAATCGAACACAAGCA
GCGCGATGTCCACACTGGGCTCGCTATTCTCCTTCACATCGCCGGCGGTG
AAGAAGCTGCTGGGCTGGAAACAGGGTGACGAAGAGGAGAAGTGGGCGGA
GAAGGCCGTCGACAGTCTGGTGAAGAAGTTGAAGAAGCGCAAGGGCGCCA
TCGAGGAGCTGGAGCGTGCGCTCTCCTGTCCCGGTCAGCCCTCGAAGTGT
GTCACCATTCCACGCTCGCTGGACGGACGATTACAGGTCTCCCATCGCAA
GGGTCTGCCGCATGTGATCTACTGCCGCGTGTGGCGCTGGCCAGATCTGC
AGTCGCACCACGAACTGAAGCCACTCGAGCTGTGCCAGTATCCGTTCAGC
GCCAAGCAGAAGGAGGTGTGCATCAATCCGTATCACTATAAGCGCGTGGA
GAGTCCGGTGCTCCCGCCAGTACTCGTTCCTCGCCACTCGGAATTCGCGC
CCGGTCACTCGATGCTGCAGTTCAACCATGTGGCCGAGCCCAGTATGCCG
CACAATGTGAGCTACTCGAACAGTGGATTCAACTCGCACAGCTTGAGCAC
CAGCAACACATCGGTGGGCAGTCCGAGTTCCGTCAACTCCAATCCCAATT
CGCCGTACGACAGCTTGGCGGGAACACCGCCACCCGCCTACAGTCCCTCG
GAGGATGGCAACTCCAACAATCCGAACGAC
BO03940.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:56:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12399-PA | 1368 | Mad-RA | 1..714 | 17..730 | 3570 | 100 | Plus |
CG2262-PA | 1461 | Smox-RA | 232..284 | 296..348 | 140 | 90.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:59:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mad-RB | 3262 | CG12399-RB | 532..1245 | 17..730 | 3570 | 100 | Plus |
Mad-RA | 2691 | CG12399-RA | 357..1070 | 17..730 | 3570 | 100 | Plus |
Smox-RB | 4521 | CG2262-RB | 1111..1193 | 296..378 | 205 | 83.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:59:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3148294..3148740 | 730..284 | 2235 | 100 | Minus |
2L | 23513712 | 2L | 3148802..3149073 | 288..17 | 1360 | 100 | Minus |
X | 23542271 | X | 8140369..8140451 | 378..296 | 205 | 83.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:59:34 has no hits.
BO03940.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:51:20 Download gff for
BO03940.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mad-PA | 1..714 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:58:53 Download gff for
BO03940.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12399-PA | 1..714 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:36:21 Download gff for
BO03940.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mad-RA | 350..1070 | 9..730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:45:07 Download gff for
BO03940.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mad-RA | 350..1070 | 9..730 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:45:07 Download gff for
BO03940.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3148294..3148737 | 287..730 | 100 | <- | Minus |
2L | 3148804..3149077 | 9..286 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:36:21 Download gff for
BO03940.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3148294..3148737 | 287..730 | 100 | <- | Minus |
arm_2L | 3148804..3149077 | 9..286 | 98 | | Minus |
BO03940.complete Sequence
1402 bp (1402 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ629594
> BO03940.complete
GAAGTTATCAGTCGACATGGACACCGACGATGTGGAATCGAACACAAGCA
GCGCGATGTCCACACTGGGCTCGCTATTCTCCTTCACATCGCCGGCGGTG
AAGAAGCTGCTGGGCTGGAAACAGGGTGACGAAGAGGAGAAGTGGGCGGA
GAAGGCCGTCGACAGTCTGGTGAAGAAGTTGAAGAAGCGCAAGGGCGCCA
TCGAGGAGCTGGAGCGTGCGCTCTCCTGTCCCGGTCAGCCCTCGAAGTGT
GTCACCATTCCACGCTCGCTGGACGGACGATTACAGGTCTCCCATCGCAA
GGGTCTGCCGCATGTGATCTACTGCCGCGTGTGGCGCTGGCCAGATCTGC
AGTCGCACCACGAACTGAAGCCACTCGAGCTGTGCCAGTATCCGTTCAGC
GCCAAGCAGAAGGAGGTGTGCATCAATCCGTATCACTATAAGCGCGTGGA
GAGTCCGGTGCTCCCGCCAGTACTCGTTCCTCGCCACTCGGAATTCGCGC
CCGGTCACTCGATGCTGCAGTTCAACCATGTGGCCGAGCCCAGTATGCCG
CACAATGTGAGCTACTCGAACAGTGGATTCAACTCGCACAGCTTGAGCAC
CAGCAACACATCGGTGGGCAGTCCGAGTTCCGTCAACTCCAATCCCAATT
CGCCGTACGACAGCTTGGCGGGAACACCGCCACCCGCCTACAGTCCCTCG
GAGGATGGCAACTCCAACAATCCGAACGACGGTGGCCAGCTGCTGGATGC
TCAGATGGGCGATGTTGCCCAGGTTAGCTATTCGGAGCCCGCCTTCTGGG
CGTCGATAGCCTACTACGAGCTAAATTGCCGCGTGGGCGAGGTGTTCCAC
TGCAACAACAACTCCGTGATCGTTGACGGTTTCACGAATCCTTCCAACAA
CTCGGACCGCTGCTGTCTCGGCCAGCTGAGCAACGTGAACAGGAATAGCA
CCATCGAGAACACACGCCGTCATATAGGCAAGGGTGTTCATTTATACTAT
GTGACCGGCGAGGTCTACGCCGAATGCCTATCCGACTCCGCCATTTTCGT
GCAGTCGCGCAACTGCAACTACCACCACGGATTCCATCCGAGCACCGTGT
GCAAAATACCGCCGGGCTGCTCGCTGAAGATCTTCAACAATCAGGAATTT
GCTCAGCTGCTGTCGCAGTCGGTGAACAATGGATTCGAGGCCGTCTACGA
GCTGACAAAGATGTGCACGATCCGGATGTCGTTCGTGAAGGGCTGGGGTG
CGGAGTATCATCGCCAGGATGTGACCTCGACGCCCTGTTGGATTGAAATC
CATCTGCACGGGCCGCTCCAGTGGCTGGACAAGGTGCTCACCCAAATGGG
CTCTCCGCATAATGCAATTAGTTCGGTATCCAAAGCAAGCTTTCTAGACC
AT
BO03940.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:36:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mad-RB | 1578 | CG12399-PB | 211..1575 | 17..1381 | 6825 | 100 | Plus |
Mad-RA | 1368 | CG12399-PA | 1..1365 | 17..1381 | 6825 | 100 | Plus |
Smox-RB | 1461 | CG2262-PB | 1162..1427 | 1085..1350 | 550 | 80.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:36:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mad-RB | 3262 | CG12399-RB | 532..1901 | 17..1386 | 6835 | 99.9 | Plus |
Mad-RA | 2691 | CG12399-RA | 357..1726 | 17..1386 | 6835 | 99.9 | Plus |
Smox-RB | 4521 | CG2262-RB | 2041..2306 | 1085..1350 | 550 | 80.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:36:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3148046..3148740 | 978..284 | 3475 | 100 | Minus |
2L | 23513712 | 2L | 3147417..3147827 | 1386..976 | 2040 | 99.8 | Minus |
2L | 23513712 | 2L | 3148802..3149073 | 288..17 | 1360 | 100 | Minus |
X | 23542271 | X | 8139256..8139521 | 1350..1085 | 550 | 80.5 | Minus |
X | 23542271 | X | 8140369..8140451 | 378..296 | 205 | 83.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:36:29 has no hits.
BO03940.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:43:31 Download gff for
BO03940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mad-RA | 1..1368 | 17..1384 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:59:50 Download gff for
BO03940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mad-RA | 344..1713 | 17..1386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:53 Download gff for
BO03940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mad-RA | 357..1726 | 17..1386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:43:31 Download gff for
BO03940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mad-RA | 337..1713 | 9..1386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:21:27 Download gff for
BO03940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mad-RA | 357..1726 | 17..1386 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:21:27 Download gff for
BO03940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3147417..3147825 | 978..1386 | 99 | <- | Minus |
2L | 3148047..3148737 | 287..977 | 100 | <- | Minus |
2L | 3148804..3149073 | 17..286 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:53 Download gff for
BO03940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3147417..3147825 | 978..1386 | 99 | <- | Minus |
arm_2L | 3148047..3148737 | 287..977 | 100 | <- | Minus |
arm_2L | 3148804..3149073 | 17..286 | 100 | | Minus |
BO03940.pep Sequence
Translation from 16 to 1402
> BO03940.pep
MDTDDVESNTSSAMSTLGSLFSFTSPAVKKLLGWKQGDEEEKWAEKAVDS
LVKKLKKRKGAIEELERALSCPGQPSKCVTIPRSLDGRLQVSHRKGLPHV
IYCRVWRWPDLQSHHELKPLELCQYPFSAKQKEVCINPYHYKRVESPVLP
PVLVPRHSEFAPGHSMLQFNHVAEPSMPHNVSYSNSGFNSHSLSTSNTSV
GSPSSVNSNPNSPYDSLAGTPPPAYSPSEDGNSNNPNDGGQLLDAQMGDV
AQVSYSEPAFWASIAYYELNCRVGEVFHCNNNSVIVDGFTNPSNNSDRCC
LGQLSNVNRNSTIENTRRHIGKGVHLYYVTGEVYAECLSDSAIFVQSRNC
NYHHGFHPSTVCKIPPGCSLKIFNNQEFAQLLSQSVNNGFEAVYELTKMC
TIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPHNA
ISSVSKASFLDH
BO03940.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:32:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mad-PB | 525 | CG12399-PB | 71..525 | 1..455 | 2468 | 100 | Plus |
Mad-PA | 455 | CG12399-PA | 1..455 | 1..455 | 2468 | 100 | Plus |
Smox-PB | 486 | CG2262-PB | 1..486 | 20..455 | 1261 | 53 | Plus |
Smox-PA | 486 | CG2262-PA | 1..486 | 20..455 | 1261 | 53 | Plus |
Med-PB | 697 | CG1775-PB | 381..688 | 174..444 | 371 | 33.5 | Plus |