Clone Sequence Records
BO03954.3prime Sequence
834 bp (739 high quality bases) assembled on 2005-12-01
> BO03954.3prime
ATGGTCTAGAAAGCTTGCTTTATCGACGCGCGCATACCGCGGCACAATAT
CCTTGCTGATCCAGTAGTTGCAGGGCAAGTAGTCCTCTTCCGGCTGCGCA
TCCTGGCCAACATTGATGACCCGGCGGTTCTGGACAAACGACTGCACCGT
GCCGTGCGAGACATAGTAGTAGAACAGCTGCTGCATGGCCGAAACGAAGC
GGCGCTGCTCTACGGTGTGCGGCTCATAGCGGCCGAGAATGGCCTGGACA
TCGGCGTCCACCGTGGCCAGCTGATCGGGTCCCTCGCCTTGGGTGACAAC
ATAGAACGGCACACTGGGCTGCTGTCTCGCATTCGTCAGCAGCGGGCAAA
CGCTGCGAATGTCCGAAATGATAGAAACCAGCGACGCATAGCTGCTGGCG
TTGTACTTCTCGATAACCTCGTCGGTGAGGCCCAATGCTCCAATCTGGGA
GTTTTCCAGATAGGCACGCACCTCCTCTCGCGTCCAGTTCGCATGCAATT
CGCGCAGTTTCTCGGTGTGCGCCTCATGCGCCGTGGCGCCCATAACCAGC
ACCGGCTTGTCGTTGGCCTGTTCGCGCTTCCAGGTATCGGAAGGATGTTC
AAAGACCACATCTCCATCGAGAACCAACCATTCGTGACGGCTACCGCTGG
CATTCGCCTCCTGCGGCTGCGGCAGATCCACGGGGAAGTGCAGCCAGGTG
TCGGGAGTGGCGGCCCAAAGTCGTTCGCTGGACGCTTCACGCAGGCACTG
GATATCAGCACACTCGAGGGTGGCCATCAGCTGCTCGTTTTTGTTTACCA
GACTCGCTCAATGGTTTACCAGGCAGAATTGCTG
BO03954.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:56:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9704-PB | 2541 | Nrt-RB | 1769..2538 | 791..22 | 3850 | 100 | Minus |
| CG9704-PA | 2541 | Nrt-RA | 1769..2538 | 791..22 | 3850 | 100 | Minus |
| CG9704-PB | 2541 | Nrt-RB | 1727..1772 | 834..789 | 230 | 100 | Minus |
| CG9704-PA | 2541 | Nrt-RA | 1727..1772 | 834..789 | 230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:30:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nrt-RC | 3523 | CG9704-RC | 2239..3057 | 834..15 | 4060 | 99.8 | Minus |
| Nrt-RA | 3177 | CG9704-RA | 1893..2711 | 834..15 | 4060 | 99.8 | Minus |
| Nrt-RB | 4158 | CG9704-RB | 2239..3057 | 834..15 | 4060 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:30:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16775546..16776364 | 834..15 | 4035 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-09 18:30:18 has no hits.
BO03954.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:51:35 Download gff for
BO03954.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrt-PB | 1727..2541 | 19..834 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:59:15 Download gff for
BO03954.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9704-PA | 1727..2541 | 19..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:57:36 Download gff for
BO03954.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrt-RB | 2239..3057 | 15..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:11:52 Download gff for
BO03954.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrt-RB | 2239..3057 | 15..834 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:11:52 Download gff for
BO03954.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16775546..16776364 | 15..834 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:57:36 Download gff for
BO03954.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16768646..16769464 | 15..834 | 99 | | Minus |
BO03954.5prime Sequence
788 bp (733 high quality bases) assembled on 2005-12-01
> BO03954.5prime
GAAGTTATCAGTCGACATGGGCGAACTCGAGGAGAAGGAAACCCCGCCCA
CTGAGACGACAGCCGCCCAGCAAGAGGCGCTAGAGGAGCCCAAGGAAACG
GACAAAATGTTGGACAAAAAAGAGGACGCCAAGGAGAAGACACCCAGTCC
ACAGACCTCCAAGCCCGCATCTCCAAATGCCGGCAAGAAATCCTCACCAG
TGGCCGAGAAAAAGATCGACGATGCTGAATTAGCGAAATCCAAATCAGGC
AATGGAGAAGAGATTATCGATATTCCCGCCGAGAATGGCACAAAGCCAGA
CAGCGCTGATGACAAAAAGATAAGCAAGGAGGAGCGCGAGGTCAAGCCCA
AAAAGATACCGATCGGAGGTCTCAAACTGCCTGGTTTCTTCATGAAGAAC
AAGCCGAAGGCAGATGGTGATGGGGCCGAGGGCGAGCTGCTCGAAAAGGA
GAAGGAAGAGGATAAGGATAAGGAAGCCAATGGAGATGCCGCCACCGGTT
CCGGCAAGGACGAACAGAAATCTCGCCCAGGACTGGGAGAACGCCTGCGC
AGCTTCTTTGCCCGCAAGCCATCCGCCGAAAAGGAAAAGAAGCAGCTGGT
CAACGGTGACGCGGATGCCAAGTCTGAAGCCACAGCTGAAGCAACGCCCG
CTGAAGATGCCTCCGATGCACCACCAAAGCGTGGACTTTTGAACGCCATC
AAGCTGCCAATCGCTAACATGATACCGAAAAAGAAGAGCAACGATGATGT
GGAGCTGGGCTTGGGCAAGGCCGGTCTGGCCTCGATGG
BO03954.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:56:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9704-PB | 2541 | Nrt-RB | 1..772 | 17..788 | 3860 | 100 | Plus |
| CG9704-PA | 2541 | Nrt-RA | 1..772 | 17..788 | 3860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 18:30:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nrt-RC | 3523 | CG9704-RC | 513..1284 | 17..788 | 3860 | 100 | Plus |
| Nrt-RA | 3177 | CG9704-RA | 167..938 | 17..788 | 3860 | 100 | Plus |
| Nrt-RB | 4158 | CG9704-RB | 513..1284 | 17..788 | 3860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 18:30:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16773757..16774366 | 17..626 | 3050 | 100 | Plus |
| 3L | 28110227 | 3L | 16774429..16774591 | 626..788 | 815 | 100 | Plus |
Blast to na_te.dros performed 2015-02-09 18:30:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 660..700 | 441..481 | 115 | 75.6 | Plus |
BO03954.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:51:36 Download gff for
BO03954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrt-PB | 1..772 | 17..788 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:59:17 Download gff for
BO03954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9704-PA | 1..772 | 17..788 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 03:57:38 Download gff for
BO03954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrt-RB | 504..1284 | 7..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:11:53 Download gff for
BO03954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrt-RB | 504..1284 | 7..788 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:11:53 Download gff for
BO03954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16773748..16774366 | 7..626 | 99 | -> | Plus |
| 3L | 16774430..16774591 | 627..788 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 03:57:38 Download gff for
BO03954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16766848..16767466 | 7..626 | 99 | -> | Plus |
| arm_3L | 16767530..16767691 | 627..788 | 100 | | Plus |
BO03954.complete Sequence
2575 bp assembled on 2006-10-10
GenBank Submission: FJ629595
> BO03954.complete
GAAGTTATCAGTCGACATGGGCGAACTCGAGGAGAAGGAAACCCCGCCCA
CTGAGACGACAGCCGCCCAGCAAGAGGCGCTAGAGGAGCCCAAGGAAACG
GACAAAATGTTGGACAAAAAAGAGGACGCCAAGGAGAAGACACCCAGTCC
ACAGACCTCCAAGCCCGCATCTCCAAATGCCGGCAAGAAATCCTCACCAG
TGGCCGAGAAAAAGATCGACGATGCTGAATTAGCGAAATCCAAATCAGGC
AATGGAGAAGAGATTATCGATATTCCCGCCGAGAATGGCACAAAGCCAGA
CAGCGCTGATGACAAAAAGATAAGCAAGGAGGAGCGCGAGGTCAAGCCCA
AAAAGATACCGATCGGAGGTCTCAAACTGCCTGGTTTCTTCATGAAGAAC
AAGCCGAAGGCAGATGGTGATGGGGCCGAGGGCGAGCTGCTCGAAAAGGA
GAAGGAAGAGGATAAGGATAAGGAAGCCAATGGAGATGCCGCCACCGGTT
CCGGCAAGGACGAACAGAAATCTCGCCCAGGACTGGGAGAACGCCTGCGC
AGCTTCTTTGCCCGCAAGCCATCCGCCGAAAAGGAAAAGAAGCAGCTGGT
CAACGGTGACGCGGATGCCAAGTCTGAAGCCACAGCTGAAGCAACGCCCG
CTGAAGATGCCTCCGATGCACCACCAAAGCGTGGACTTTTGAACGCCATC
AAGCTGCCAATCGCTAACATGATACCGAAAAAGAAGAGCAACGATGATGT
GGAGCTGGGCTTGGGCAAGGCCGGTCTGGCCTCGATGGAGACCCTCGATG
ATTCCCTTAAGGATCAAGACACAGTGGATCGGGCTCCCGTCAAGACCAAC
GGTACCGAGGAACTAAAGGGCGAGCTAAAGGATGAGAAGCTGGCGGCGGA
GGAAAAACTAGCCGCCGAGGAGGAGGAGCAAAACCGACCCGTCTCCTTGC
TAACCCGTCTGCGTGGCTACAAGTGCAGTGTGGACGATGCCCTGATTGTG
TTTGGCATCCTGCTATTTGTGCTCCTGTTGGGCGTGATTGGTTATGTACT
AACCCACGAGACTTTGACCTCGCCGCCGCTGCGGGAAGGACGCTACATAA
TGGCAGTGACGGGGTGCGGACCTGTGGAGGGCGTTAAGGAAGATGGAGCC
TTTGCCTTCCGTGGCATTCCGTATGCAAAGCCACCCGTAGACAGACTGAG
ATGGAAGCCGGCTGAACTGATTGATGACATCAATATGTGCTGGAATGATA
CACTGCAAACCCATAACAGCAGTGTGGTGTGCACGCAGCGATTGGGCAAT
GGCACCACAGTTGGCGACGAGGATTGTCTATACCTTGACGTGGTTACTCC
CCATGTGCGGTACAATAACCCCTTGCCTGTGGTCGTCCTGATCGGAGCAG
AATCTTTGGCTGGTCCTTCGCCGGGTATTCTCCGTCCATCGGCTCGCTAT
TCTCGATCGCACGATGTGATCTTTGTGCGTCCCAATTTCCGTTTGGGTGT
CTTCGGCTTCCTAGCCCTCGACGCTCTGACCAAGGAGGCACACCCGCCAA
CTTCGGGCAACTATGCGCTCACCGACATCATTGCCGTGCTGAACTGGATC
AAGTTGAACATCGTACATTTTGGTGGCGACCCGCAATCCGTCACCCTGCT
GGGTCATCGGGCCGGAGCCACTCTGGTGACTCTTCTAGTTAACTCACAAA
AGGTCAAGGGTCTGTACACCAGGGCCTGGGCATCATCTGGATCAGCAATT
CTGCCTGGTAAACCATTGAGCGAGTCTGGTAAACAAAACGAGCAGCTGAT
GGCCACCCTCGAGTGTGCTGATATCCAGTGCCTGCGTGAAGCGTCCAGCG
AACGACTTTGGGCCGCCACTCCCGACACCTGGCTGCACTTCCCCGTGGAT
CTGCCGCAGCCGCAGGAGGCGAATGCCAGCGGTAGCCGTCACGAATGGTT
GGTTCTCGATGGAGATGTGGTCTTTGAACATCCTTCCGATACCTGGAAGC
GCGAACAGGCCAACGACAAGCCGGTGCTGGTTATGGGCGCCACGGCGCAT
GAGGCGCACACCGAGAAACTGCGCGAATTGCATGCGAACTGGACGCGAGA
GGAGGTGCGTGCCTATCTGGAAAACTCCCAGATTGGAGCATTGGGCCTCA
CCGACGAGGTTATCGAGAAGTACAACGCCAGCAGCTATGCGTCGCTGGTT
TCTATCATTTCGGACATTCGCAGCGTTTGCCCGCTGCTGACGAATGCGAG
ACAGCAGCCCAGTGTGCCGTTCTATGTTGTCACCCAAGGCGAGGGACCCG
ATCAGCTGGCCACGGTGGACGCCGATGTCCAGGCCATTCTCGGCCGCTAT
GAGCCGCACACCGTAGAGCAGCGCCGCTTCGTTTCGGCCATGCAGCAGCT
GTTCTACTACTATGTCTCGCACGGCACGGTGCAGTCGTTTGTCCAGAACC
GCCGGGTCATCAATGTTGGCCAGGATGCGCAGCCGGAAGAGGACTACTTG
CCCTGCAACTACTGGATCAGCAAGGATATTGTGCCGCGGTATGCGCGCGT
CGATAAAGCAAGCTTTCTAGACCAT
BO03954.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:13:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nrt-RC | 2541 | CG9704-PC | 1..2538 | 17..2554 | 12690 | 100 | Plus |
| Nrt-RA | 2541 | CG9704-PA | 1..2538 | 17..2554 | 12690 | 100 | Plus |
| Nrt-RB | 2541 | CG9704-PB | 1..2538 | 17..2554 | 12690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nrt-RC | 3523 | CG9704-RC | 513..3057 | 17..2561 | 12710 | 100 | Plus |
| Nrt-RA | 3177 | CG9704-RA | 167..2711 | 17..2561 | 12710 | 100 | Plus |
| Nrt-RB | 4158 | CG9704-RB | 513..3057 | 17..2561 | 12710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16774429..16776364 | 626..2561 | 9665 | 99.9 | Plus |
| 3L | 28110227 | 3L | 16773757..16774366 | 17..626 | 3050 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:13:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 660..700 | 441..481 | 115 | 75.6 | Plus |
BO03954.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:35 Download gff for
BO03954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrt-RA | 1..2541 | 17..2557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:42 Download gff for
BO03954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrt-RA | 156..2709 | 7..2561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:55:33 Download gff for
BO03954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrt-RB | 513..3055 | 17..2559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:35 Download gff for
BO03954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrt-RA | 156..2709 | 7..2561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:14:10 Download gff for
BO03954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nrt-RB | 513..3055 | 17..2559 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:14:10 Download gff for
BO03954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16773757..16774366 | 17..626 | 100 | -> | Plus |
| 3L | 16774430..16776362 | 627..2559 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:55:33 Download gff for
BO03954.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16766857..16767466 | 17..626 | 100 | -> | Plus |
| arm_3L | 16767530..16769462 | 627..2559 | 99 | | Plus |
BO03954.pep Sequence
Translation from 16 to 2575
> BO03954.pep
MGELEEKETPPTETTAAQQEALEEPKETDKMLDKKEDAKEKTPSPQTSKP
ASPNAGKKSSPVAEKKIDDAELAKSKSGNGEEIIDIPAENGTKPDSADDK
KISKEEREVKPKKIPIGGLKLPGFFMKNKPKADGDGAEGELLEKEKEEDK
DKEANGDAATGSGKDEQKSRPGLGERLRSFFARKPSAEKEKKQLVNGDAD
AKSEATAEATPAEDASDAPPKRGLLNAIKLPIANMIPKKKSNDDVELGLG
KAGLASMETLDDSLKDQDTVDRAPVKTNGTEELKGELKDEKLAAEEKLAA
EEEEQNRPVSLLTRLRGYKCSVDDALIVFGILLFVLLLGVIGYVLTHETL
TSPPLREGRYIMAVTGCGPVEGVKEDGAFAFRGIPYAKPPVDRLRWKPAE
LIDDINMCWNDTLQTHNSSVVCTQRLGNGTTVGDEDCLYLDVVTPHVRYN
NPLPVVVLIGAESLAGPSPGILRPSARYSRSHDVIFVRPNFRLGVFGFLA
LDALTKEAHPPTSGNYALTDIIAVLNWIKLNIVHFGGDPQSVTLLGHRAG
ATLVTLLVNSQKVKGLYTRAWASSGSAILPGKPLSESGKQNEQLMATLEC
ADIQCLREASSERLWAATPDTWLHFPVDLPQPQEANASGSRHEWLVLDGD
VVFEHPSDTWKREQANDKPVLVMGATAHEAHTEKLRELHANWTREEVRAY
LENSQIGALGLTDEVIEKYNASSYASLVSIISDIRSVCPLLTNARQQPSV
PFYVVTQGEGPDQLATVDADVQAILGRYEPHTVEQRRFVSAMQQLFYYYV
SHGTVQSFVQNRRVINVGQDAQPEEDYLPCNYWISKDIVPRYARVDKASF
LDH
BO03954.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nrt-PC | 846 | CG9704-PC | 1..846 | 1..846 | 4387 | 100 | Plus |
| Nrt-PA | 846 | CG9704-PA | 1..846 | 1..846 | 4387 | 100 | Plus |
| Nrt-PB | 846 | CG9704-PB | 1..846 | 1..846 | 4387 | 100 | Plus |
| CG4382-PB | 580 | CG4382-PB | 67..361 | 379..679 | 328 | 34.7 | Plus |
| CG10175-PE | 644 | CG10175-PE | 85..426 | 355..680 | 309 | 28.9 | Plus |
