Clone Sequence Records
BO03983.3prime Sequence
785 bp (726 high quality bases) assembled on 2005-12-01
> BO03983.3prime
ATGGTCTAGAAAGCTTGCTTTGGCCACCAGGGTCAGGTTTGTGGGCGCAG
TATCCGCCACGAGAATCAGTGGTCGGTTGACGGATGATGTCCTCGCAGTG
GCCAAGGACTCCTGATCCAGCCAGCGCTGCAGGTGCTGCTGATGTTGCAG
GTGATGCTGCTGTTGCTGCTGCTGCTGCTGCTGTTGCATGTACATCAGAT
TGTCGTTGTAGACGGCATGCAGCTGGAGATTGAGGCTGTAGTTGCTGCCG
CTGTCGCTGTAGGTGGATGAGCTGCTCTCGTAACCGGAAACGGGCGATCC
TTTGGGGCAACAGAAGCCGGTGGGCGAGAGGGCGGGCGCCGAGAATGGGC
TGAGGGGCGTGGTGGCTTTGCTGGAGCTGCAGTTGTCCTGAAATTGCTGA
TTAGGACTCCCGCCGGCGACGGGAAATGTCTGCTGCTGTTGCATACTGGT
GGGGCACTGAAAGCTGCTGGTGATCGAACTGCCGGGCGATACACAGCCAC
CGGGATACGGATGGTTGCTCCAGATGATGGGTTCCCTTTGTTCGTTGATT
GCCGATGGCTTTTTCTTGAGGCGACGCTGTTTCTTGTCGGCCGCCTCCTT
GGAGTCCACCTCATCATCGTCGGCATAGCGGGACTCTTCCTCGTCGTCCT
GCTCCTCCTCGGCAGCTCCCTCATCCAAATCCTCCTGCCGATGGTGATGG
TGATGATGATGATGATCCTGCTCCTCATCATCGTCCAGCAAATAGGGCTT
AAATAGCTTGACCTGTTTAGAGGGCAGCTTGTGCT
BO03983.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:56:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9653-PA | 2115 | brk-RA | 1349..2112 | 785..22 | 3820 | 100 | Minus |
| CG2368-PH | 1938 | psq-RH | 1769..1803 | 191..157 | 175 | 100 | Minus |
| CG2368-PG | 1938 | psq-RG | 1769..1803 | 191..157 | 175 | 100 | Minus |
| CG2368-PD | 1938 | psq-RD | 1769..1803 | 191..157 | 175 | 100 | Minus |
| CG2368-PF | 1938 | psq-RF | 1769..1803 | 191..157 | 175 | 100 | Minus |
| CG2368-PE | 1938 | psq-RE | 1769..1803 | 191..157 | 175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:57:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brk-RA | 3194 | CG9653-RA | 1883..2650 | 785..18 | 3825 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:57:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7309821..7310588 | 785..18 | 3825 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-12 15:57:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2480..2654 | 275..109 | 152 | 59.1 | Minus |
BO03983.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:52:09 Download gff for
BO03983.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9653-PA | 1349..2115 | 19..785 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:00:05 Download gff for
BO03983.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9653-PA | 1349..2115 | 19..785 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:27:17 Download gff for
BO03983.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brk-RA | 1883..2652 | 15..785 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:30:57 Download gff for
BO03983.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brk-RA | 1883..2652 | 15..785 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:30:57 Download gff for
BO03983.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7309821..7310590 | 15..785 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:27:17 Download gff for
BO03983.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7203854..7204623 | 15..785 | 99 | | Minus |
BO03983.5prime Sequence
790 bp (706 high quality bases) assembled on 2005-12-01
> BO03983.5prime
GAAGTTATCAGTCGACATGGTTCCACACCCCCTGGCCGCCCATCCCCACT
TGCATGTCCCGGTGGCAATGCATCCTCAAATGCAGCATCAGAAGGAGCAA
CAGCAGCAGCAGCAGCAGTTGCAGCAGGAGCAGCAGCAACAGGATCAGCA
GCAGTCACAGCAGGAGACACCTGCAACCATTGCTACCAATGGCAGCAATC
AGGGATCCTCGAATGTCCTTTCGGCGGCCAAAATAGCCGCTGTTGTTGCC
GCCGCCATGGCCACCAGCAATGGCAATCCCACACCGACAGCAACAATCCC
CGCCAGCAGCAGCAGCAGCAGCAACACATTGCCGAGCAGCAATAACAGTA
GTTGCCACAACAGCAGCAGCAGCAGCAATAGCTGCAACAGCAACCAAGTG
CCAATACAAGTGCCAATCCTGAGCGGATCCCCTGGGTCCACATCGTCAGC
CAGTCACATTCCACATGTGCCCTTTGCCTACCATCACAATCTGCATGGCT
ATTTGGAGAATCGACTGGAGGCGGTTGCCACACCAGCCCCCATGGACCTC
TCTCTCGGATCCTCTGCCCGCCGTCAAATGCAGTTGCACGAAAAGGATCC
ATCTGGTGTGGATCTCACTTTCCGCAAACGTAAGGTCATCACTAGTCCGA
TGCAGCCGGATAAGATTAGTAAGCTGGAGGAGGTGATCAAGAAGGAGCCC
GAAACGGAAACGGAGAACGAGGATGTGGAGGTGGACGTGGAGACGGAGCA
GCCGGAGGAGCACAAGCTGCCCTCTAAACAGGTCAAGCTA
BO03983.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:56:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9653-PA | 2115 | brk-RA | 606..1380 | 16..790 | 3875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:25:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brk-RA | 3194 | CG9653-RA | 1140..1914 | 16..790 | 3875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:25:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7309078..7309852 | 16..790 | 3875 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:25:25 has no hits.
BO03983.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:52:10 Download gff for
BO03983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9653-PA | 600..1379 | 9..789 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:00:06 Download gff for
BO03983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9653-PA | 600..1379 | 9..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:31:44 Download gff for
BO03983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brk-RA | 1134..1913 | 9..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:25:41 Download gff for
BO03983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brk-RA | 1134..1913 | 9..789 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:25:41 Download gff for
BO03983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7309072..7309851 | 9..789 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:31:44 Download gff for
BO03983.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7203105..7203884 | 9..789 | 99 | | Plus |
BO03983.complete Sequence
1543 bp assembled on 2006-10-10
GenBank Submission: FJ629597
> BO03983.complete
GAAGTTATCAGTCGACATGGTTCCACACCCCCTGGCCGCCCATCCCCACT
TGCATGTCCCGGTGGCAATGCATCCTCAAATGCAGCATCAGAAGGAGCAA
CAGCAGCAGCAGCAGCAGTTGCAGCAGGAGCAGCAGCAACAGGATCAGCA
GCAGTCACAGCAGGAGACACCTGCAACCATTGCTACCAATGGCAGCAATC
AGGGATCCTCGAATGTCCTTTCGGCGGCCAAAATAGCCGCTGTTGTTGCC
GCCGCCATGGCCACCAGCAATGGCAATCCCACACCGACAGCAACAATCCC
CGCCAGCAGCAGCAGCAGCAGCAACACATTGCCGAGCAGCAATAACAGTA
GTTGCCACAACAGCAGCAGCAGCAGCAATAGCTGCAACAGCAACCAAGTG
CCAATACAAGTGCCAATCCTGAGCGGATCCCCTGGGTCCACATCGTCAGC
CAGTCACATTCCACATGTGCCCTTTGCCTACCATCACAATCTGCATGGCT
ATTTGGAGAATCGACTGGAGGCGGTTGCCACACCAGCCCCCATGGACCTC
TCTCTCGGATCCTCTGCCCGCCGTCAAATGCAGTTGCACGAAAAGGATCC
ATCTGGTGTGGATCTCACTTTCCGCAAACGTAAGGTCATCACTAGTCCGA
TGCAGCCGGATAAGATTAGTAAGCTGGAGGAGGTGATCAAGAAGGAGCCC
GAAACGGAAACGGAGAACGAGGATGTGGAGGTGGACGTGGAGACGGAGCA
GCCGGAGGAGCACAAGCTGCCCTCTAAACAGGTCAAGCTATTTAAGCCCT
ATTTGCTGGACGATGATGAGGAGCAGGATCATCATCATCATCACCATCAC
CATCGGCAGGAGGATTTGGATGAGGGAGCTGCCGAGGAGGAGCAGGACGA
CGAGGAAGAGTCCCGCTATGCCGACGATGATGAGGTGGACTCCAAGGAGG
CGGCCGACAAGAAACAGCGTCGCCTCAAGAAAAAGCCATCGGCAATCAAC
GAACAAAGGGAACCCATCATCTGGAGCAACCATCCGTATCCCGGTGGCTG
TGTATCGCCCGGCAGTTCGATCACCAGCAGCTTTCAGTGCCCCACCAGTA
TGCAACAGCAGCAGACATTTCCCGTCGCCGGCGGGAGTCCTAATCAGCAA
TTTCAGGACAACTGCAGCTCCAGCAAAGCCACCACGCCCCTCAGCCCATT
CTCGGCGCCCGCCCTCTCGCCCACCGGCTTCTGTTGCCCCAAAGGATCGC
CCGTTTCCGGTTACGAGAGCAGCTCATCCACCTACAGCGACAGCGGCAGC
AACTACAGCCTCAATCTCCAGCTGCATGCCGTCTACAACGACAATCTGAT
GTACATGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCATCACCTGCAAC
ATCAGCAGCACCTGCAGCGCTGGCTGGATCAGGAGTCCTTGGCCACTGCG
AGGACATCATCCGTCAACCGACCACTGATTCTCGTGGCGGATACTGCGCC
CACAAACCTGACCCTGGTGGCCAAAGCAAGCTTTCTAGACCAT
BO03983.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:32:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brk-RA | 2115 | CG9653-PA | 606..2112 | 16..1522 | 7535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:32:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brk-RA | 3194 | CG9653-RA | 1140..2650 | 16..1526 | 7540 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:32:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7309078..7310588 | 16..1526 | 7540 | 99.9 | Plus |
Blast to na_te.dros performed 2014-11-26 16:32:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2480..2654 | 1269..1435 | 152 | 59.1 | Plus |
BO03983.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:41 Download gff for
BO03983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brk-RA | 600..2115 | 9..1525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:53 Download gff for
BO03983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brk-RA | 1132..2650 | 9..1529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:03:37 Download gff for
BO03983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brk-RA | 1141..2650 | 17..1527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:41 Download gff for
BO03983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brk-RA | 1132..2650 | 9..1529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:21:39 Download gff for
BO03983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brk-RA | 1141..2650 | 17..1527 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:21:39 Download gff for
BO03983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7309079..7310588 | 17..1527 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:03:37 Download gff for
BO03983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7203112..7204621 | 17..1527 | 99 | | Plus |
BO03983.pep Sequence
Translation from 16 to 1543
> BO03983.pep
MVPHPLAAHPHLHVPVAMHPQMQHQKEQQQQQQQLQQEQQQQDQQQSQQE
TPATIATNGSNQGSSNVLSAAKIAAVVAAAMATSNGNPTPTATIPASSSS
SSNTLPSSNNSSCHNSSSSSNSCNSNQVPIQVPILSGSPGSTSSASHIPH
VPFAYHHNLHGYLENRLEAVATPAPMDLSLGSSARRQMQLHEKDPSGVDL
TFRKRKVITSPMQPDKISKLEEVIKKEPETETENEDVEVDVETEQPEEHK
LPSKQVKLFKPYLLDDDEEQDHHHHHHHHRQEDLDEGAAEEEQDDEEESR
YADDDEVDSKEAADKKQRRLKKKPSAINEQREPIIWSNHPYPGGCVSPGS
SITSSFQCPTSMQQQQTFPVAGGSPNQQFQDNCSSSKATTPLSPFSAPAL
SPTGFCCPKGSPVSGYESSSSTYSDSGSNYSLNLQLHAVYNDNLMYMQQQ
QQQQQQQHHLQHQQHLQRWLDQESLATARTSSVNRPLILVADTAPTNLTL
VAKASFLDH
BO03983.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:34:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brk-PA | 704 | CG9653-PA | 203..704 | 1..502 | 2634 | 100 | Plus |
| mim-PG | 2009 | CG33558-PG | 1066..1597 | 21..494 | 180 | 22.8 | Plus |
| mim-PC | 2027 | CG33558-PC | 1084..1615 | 21..494 | 180 | 22.8 | Plus |
| mim-PF | 2028 | CG33558-PF | 1084..1615 | 21..494 | 180 | 22.8 | Plus |
| mim-PB | 1654 | CG33558-PB | 1084..1561 | 21..486 | 172 | 22.3 | Plus |
