Clone Sequence Records
BO04013.3prime Sequence
838 bp (752 high quality bases) assembled on 2005-12-01
> BO04013.3prime
ATGGTCTAGAAAGCTTGCAGAACCGCAGGACATGCAGGCGTCCTTATTTT
CGAGCGAACAAACCATATCGGCCATTTTCCGTTCCCTATCCTCTTCGTAC
TTTTGGGGGCTTCCCTCGGCGGTGCCATTCTGGCCATTCATGCTCACTGC
ACCCTGCTTCTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGG
TGCGCAGATAGTACATTCCGGTTTTGAGACCAGCTTTCCAGGAATAAAAA
TGTATGGAGGTCAGCTTTCCATAGTTTGGCTCGGCCACATGTATGTTGAA
CGACTGACTCTGATCTATGAACGCACCACGATCGGCGGCCATTTTAATCG
TGGACTTGACCGAGATTTCCCACACCGTCTTGTACAGATCGCGCACCTTC
GGGGGTATGGTCTCAATGTTTTGGATCGATCCTCTGCTGGATATGATCTG
GTTCTTCATGTCGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAACA
AATGATGGTTGACCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTAT
ATGTTTGTGGTGTAGGGCTCGAAGGATTCATTATTGCCCATTATCTGAGC
TGTAGATGCCGTGGGCATGGGAGCAACAAGCAGAGAGTTCCGGACACCGT
GCATCCTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGTTCGTTGGC
ACCTTGTCCCACATGTCGTATTGCAAAATTCCCTTGCTTACCGGGCTGCC
CTCGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTT
CCAGGCGCCATAGTAAATCGTTTCGAATATCTGCTGAT
BO04013.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:56:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5371-PA | 2439 | RnrL-RA | 1652..2436 | 803..19 | 3925 | 100 | Minus |
| CG5371-PA | 2439 | RnrL-RA | 1616..1651 | 838..803 | 180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:00:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RnrL-RA | 2577 | CG5371-RA | 1681..2501 | 838..19 | 4080 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:00:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10325102..10325922 | 19..838 | 4055 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:00:27 has no hits.
BO04013.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:52:33 Download gff for
BO04013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrL-PA | 1616..2439 | 15..838 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:00:38 Download gff for
BO04013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5371-PA | 1616..2439 | 15..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:36:34 Download gff for
BO04013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrL-RA | 1681..2512 | 9..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:48:21 Download gff for
BO04013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrL-RA | 1681..2512 | 9..838 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:48:21 Download gff for
BO04013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10325091..10325922 | 9..838 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:36:34 Download gff for
BO04013.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10325091..10325922 | 9..838 | 99 | | Plus |
BO04013.5prime Sequence
883 bp (853 high quality bases) assembled on 2005-12-01
> BO04013.5prime
GAAGTTATCAGTCGACATGTTGAAGAACAAGTCCATGAAAACCTCAAAGT
TATATGTTATTAAGAGAGATGGCAGGCAGGAGGAGGTGCACTTCGATAAA
ATAACCTCAAGAATCCAGAAGCTTTGCTACAACTTGAACATGGATTTTGT
TGATCCTGTTACTATCACCCTGCAAGTCATCAATGGTCTGTACTGCGGCG
TGACCACCCAGGAGCTGGACAACTTGGCAGCAGAAATCGCAGCTGGATTA
ACATGCAATCATCCCGACTACGCCATCCTGGCTGCTCGCATTGCAGTGTC
CAATTTGCACAAGGAAACCAAGAAGGCTTTTTCTGACGTCTTCGAGGATC
TGTATAATCATGTAAACAAGGAGACGAATCAAAAAGTGCCCTTGGTATCC
GAGTTTCACTACAATGTGGTTAAGAAGAACGCCACACGGCTGAACTCGTC
CATAATCTATGATCGTGACTTTGGCTATAACTATTTTGGCTTCAAGACCC
TGGAGCGTTCCTATCTGCTCAAAAGAAACGGAAAGATCGCAGAGCGACCG
CAGCATATGCTGATGCGCGTGGCGATCGGAATCCATGGAGAGGATATCGA
TGCGGCCGTGGAAACTTATAATCTTCTATCGGAGCGCTACTTCACGCATG
CATCGCCCACACTGTTTGCCGCTGCCACAAACCGGCCGCAGTTGTCGTCG
TGTTTCCTTCTGACCATGACAGCCGACTCCATCGAGGGCATTTTCAAGTC
TGTGGAGCAGTGCGCCATGATCTCCAAGTCCGCCGGTGGCATTGGACTTA
ACGTACACTGCATTCGTGCAAAGGGCACATCGATTTGCGGCACAAATGGA
ACTTCGAATGGGTTGGTTCCNATGCTGAGGGTT
BO04013.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:56:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5371-PA | 2439 | RnrL-RA | 1..867 | 17..883 | 4316 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:15:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RnrL-RA | 2577 | CG5371-RA | 58..932 | 9..883 | 4334 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:15:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10326671..10327219 | 883..335 | 2734 | 99.8 | Minus |
| 2L | 23513712 | 2L | 10327277..10327454 | 335..158 | 890 | 100 | Minus |
| 2L | 23513712 | 2L | 10327685..10327777 | 159..67 | 465 | 100 | Minus |
| 2L | 23513712 | 2L | 10327823..10327886 | 72..9 | 275 | 95.3 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:15:36 has no hits.
BO04013.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:52:33 Download gff for
BO04013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrL-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:00:40 Download gff for
BO04013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5371-PA | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:15:14 Download gff for
BO04013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrL-RA | 49..932 | 1..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:30:20 Download gff for
BO04013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrL-RA | 49..932 | 1..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:30:20 Download gff for
BO04013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10327687..10327775 | 69..157 | 100 | <- | Minus |
| 2L | 10327827..10327895 | 1..68 | 92 | | Minus |
| 2L | 10326671..10327218 | 336..883 | 99 | <- | Minus |
| 2L | 10327277..10327454 | 158..335 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:15:14 Download gff for
BO04013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10326671..10327218 | 336..883 | 99 | <- | Minus |
| arm_2L | 10327277..10327454 | 158..335 | 100 | <- | Minus |
| arm_2L | 10327687..10327775 | 69..157 | 100 | <- | Minus |
| arm_2L | 10327827..10327895 | 1..68 | 92 | | Minus |
BO04013.complete Sequence
2470 bp assembled on 2008-08-14
GenBank Submission: FJ629598
> BO04013.complete
GAAGTTATCAGTCGACATGTTGAAGAACAAGTCCATGAAAACCTCAAAGT
TATATGTTATTAAGAGAGATGGCAGGCAGGAGGAGGTGCACTTCGATAAA
ATAACCTCAAGAATCCAGAAGCTTTGCTACAACTTGAACATGGATTTTGT
TGATCCTGTTACTATCACCCTGCAAGTCATCAATGGTCTGTACTGCGGCG
TGACCACCCAGGAGCTGGACAACTTGGCAGCAGAAATCGCAGCTGGATTA
ACATGCAATCATCCCGACTACGCCATCCTGGCTGCTCGCATTGCAGTGTC
CAATTTGCACAAGGAAACCAAGAAGGCTTTTTCTGACGTCTTCGAGGATC
TGTATAATCATGTAAACAAGGAGACGAATCAAAAAGTGCCCTTGGTATCC
GAGTTTCACTACAATGTGGTTAAGAAGAACGCCACACGGCTGAACTCGTC
CATAATCTATGATCGTGACTTTGGCTATAACTATTTTGGCTTCAAGACCC
TGGAGCGTTCCTATCTGCTCAAAAGAAACGGAAAGATCGCAGAGCGACCG
CAGCATATGCTGATGCGCGTGGCGATCGGAATCCATGGAGAGGATATCGA
TGCGGCCGTGGAAACTTATAATCTTCTATCGGAGCGCTACTTCACGCATG
CATCGCCCACACTGTTTGCCGCTGCCACAAACCGGCCGCAGTTGTCGTCG
TGTTTCCTTCTGACCATGACAGCCGACTCCATCGAGGGCATTTTCAAGTC
TGTGGAGCAGTGCGCCATGATCTCCAAGTCCGCCGGTGGCATTGGACTTA
ACGTACACTGCATTCGTGCAAAGGGCACATCGATTTGCGGCACAAATGGA
ACTTCGAATGGGTTGGTTCCAATGCTGAGGGTTTTCAATAATGTGGCACG
TTATGTGGATCAGGGAGGCGGCAAGCGTCCCGGTGCCTTTGCCATTTACC
TGGAACCCTGGCACTCGGATGTCTTTGAGTTCCTGGAACTGAAGAAGAAC
ACAGGCAAAGAAGAGAATCGCGCACGCGATCTGTTTTACGCCCTGTGGAT
ACCCGATCTCTTCATGAAACGCGTGGAGGCCAACGGTGATTGGTCGCTCA
TGTGCCCCCACAAGTGTCCTGGTCTCCACGACGTGTGGGGCGATGAATTC
GAAAAGCTGTACGAGAAATACGAGCAAGAGGGTCGGGCCAACCGAACGGT
TAAGGCTCAATCCCTGTGGTTTGCCATCATTGAGGCGCAAGTGGAGACCG
GAAATCCGTACATGCTGTTCAAGGACGCTTGCAACAGGAAGAGCAACCAG
CAGAATGTGGGCACAATCAAGTGCAGCAACTTGTGTACGGAAATCGTAGA
ATACTCCGCACCGGATGAGATAGCAGTCTGCAACTTGGCCTCCATTGCCC
TCAACATGTTTGTAACGCCGGAGAAGACGTATGATTTCAAGAAGCTCAAG
GAAGTCACCAAGATAGTTACCAAAAATCTAAACAAGATAATTGATATCAA
CTATTATCCTCTGCCAGAGGCAAGGAAATCCAATTTGAGGCACCGTCCCG
TGGGCATTGGTATTCAGGGATTCGCTGATGCTTTGATTCTCATGCGTTTC
CCGTACGAAAGCGAAGAAGCCGGTCTCTTGAATCAGCAGATATTCGAAAC
GATTTACTATGGCGCCTTGGAAGCCAGCTGCGAACTGGCCCAGACCGAAG
GTCCATACGAAACCTACGAGGGCAGCCCGGTAAGCAAGGGAATTTTGCAA
TACGACATGTGGGACAAGGTGCCAACGAACCTGTGGGACTGGCAGAAATT
GAAGGAGTCCATTAGGATGCACGGTGTCCGGAACTCTCTGCTTGTTGCTC
CCATGCCCACGGCATCTACAGCTCAGATAATGGGCAATAATGAATCCTTC
GAGCCCTACACCACAAACATATACACCCGGCGAGTTCTGTCCGGCGAATT
CCAGGTGGTCAACCATCATTTGTTGCGCGACCTAACCGAGCTGGACTTGT
GGGACGACGACATGAAGAACCAGATCATATCCAGCAGAGGATCGATCCAA
AACATTGAGACCATACCCCCGAAGGTGCGCGATCTGTACAAGACGGTGTG
GGAAATCTCGGTCAAGTCCACGATTAAAATGGCCGCCGATCGTGGTGCGT
TCATAGATCAGAGTCAGTCGTTCAACATACATGTGGCCGAGCCAAACTAT
GGAAAGCTGACCTCCATACATTTTTATTCCTGGAAAGCTGGTCTCAAAAC
CGGAATGTACTATCTGCGCACCAAGCCAGCTGCGAATGCCATTCAGTTCA
CCGTGAACAAGAAGCAGGGTGCAGTGAGCATGAATGGCCAGAATGGCACC
GCCGAGGGAAGCCCCCAAAAGTACGAAGAGGATAGGGAACGGAAAATGGC
CGATATGGTTTGTTCGCTCGAAAATAAGGACGCCTGCATGTCCTGCGGTT
CTGCAAGCTTTCTAGACCAT
BO04013.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:18:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RnrL-RA | 2439 | CG5371-PA | 1..2436 | 17..2452 | 12180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RnrL-RA | 2577 | CG5371-RA | 58..2501 | 9..2452 | 12190 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10325102..10327219 | 2452..335 | 10590 | 100 | Minus |
| 2L | 23513712 | 2L | 10327277..10327454 | 335..158 | 890 | 100 | Minus |
| 2L | 23513712 | 2L | 10327685..10327777 | 159..67 | 465 | 100 | Minus |
| 2L | 23513712 | 2L | 10327823..10327886 | 72..9 | 275 | 95.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:18:26 has no hits.
BO04013.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:42:02 Download gff for
BO04013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrL-RA | 92..2555 | 1..2462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:57:30 Download gff for
BO04013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrL-RA | 71..2501 | 22..2454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:10 Download gff for
BO04013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrL-RA | 114..2544 | 22..2454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:04 Download gff for
BO04013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrL-RA | 71..2501 | 22..2454 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:04 Download gff for
BO04013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10327827..10327873 | 22..68 | 100 | | Minus |
| 2L | 10325100..10327218 | 336..2454 | 99 | <- | Minus |
| 2L | 10327277..10327454 | 158..335 | 100 | <- | Minus |
| 2L | 10327687..10327775 | 69..157 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:57:30 Download gff for
BO04013.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10325100..10327218 | 336..2454 | 99 | <- | Minus |
| arm_2L | 10327277..10327454 | 158..335 | 100 | <- | Minus |
| arm_2L | 10327687..10327775 | 69..157 | 100 | <- | Minus |
| arm_2L | 10327827..10327873 | 22..68 | 100 | | Minus |
BO04013.pep Sequence
Translation from 16 to 2470
> BO04013.pep
MLKNKSMKTSKLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTI
TLQVINGLYCGVTTQELDNLAAEIAAGLTCNHPDYAILAARIAVSNLHKE
TKKAFSDVFEDLYNHVNKETNQKVPLVSEFHYNVVKKNATRLNSSIIYDR
DFGYNYFGFKTLERSYLLKRNGKIAERPQHMLMRVAIGIHGEDIDAAVET
YNLLSERYFTHASPTLFAAATNRPQLSSCFLLTMTADSIEGIFKSVEQCA
MISKSAGGIGLNVHCIRAKGTSICGTNGTSNGLVPMLRVFNNVARYVDQG
GGKRPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFM
KRVEANGDWSLMCPHKCPGLHDVWGDEFEKLYEKYEQEGRANRTVKAQSL
WFAIIEAQVETGNPYMLFKDACNRKSNQQNVGTIKCSNLCTEIVEYSAPD
EIAVCNLASIALNMFVTPEKTYDFKKLKEVTKIVTKNLNKIIDINYYPLP
EARKSNLRHRPVGIGIQGFADALILMRFPYESEEAGLLNQQIFETIYYGA
LEASCELAQTEGPYETYEGSPVSKGILQYDMWDKVPTNLWDWQKLKESIR
MHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNH
HLLRDLTELDLWDDDMKNQIISSRGSIQNIETIPPKVRDLYKTVWEISVK
STIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYL
RTKPAANAIQFTVNKKQGAVSMNGQNGTAEGSPQKYEEDRERKMADMVCS
LENKDACMSCGSASFLDH
BO04013.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:55:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RnrL-PA | 812 | CG5371-PA | 1..812 | 1..812 | 4278 | 100 | Plus |
