Clone Sequence Records
BO04014.3prime Sequence
668 bp (667 high quality bases) assembled on 2005-12-01
> BO04014.3prime
ATGGTCTAGAAAGCTTGCTGCCGGCAGCTGGAGCTTCTTGCCCTTAAGAA
CTTTGGTAATGTATAAGTAGAAGAAGTCGCAGTACAAGACGGTCTGGACA
ACTCCGGCGAAGATCGCGATAAGGTCGTAGTGCGACTCGACCATGTACCG
GTAGACCCAGTTGAGCAAGTAGAGTGCACGGTACGATCCCAGGGCGAAGA
GGTAGTGGCTGGTGATGGACTCGGCCTCGCCGGTTCTGCTCACTAGGAAC
AGCTGCGGCAGAATGGCCACCGATTCCAAATAGATCGAGAATGTCCACAG
CACTTCCATCACGGTAAACTCATGATTGATCACCAGCGAGAGCAGGGCGC
ACGGCACCAGCAGGAATTCGATGCGGAACGAATCGTGATTGTGGTCATAG
GTGGCCTTAAACTTCACGTACATCAAATACACGGTGGCACCGGACGTGGC
CAGGAACAACACCTTCATCACCGAGTTGTACAGGCTCACGTAGGTGGTGA
ACAGATCCAGGTAGCGCGTCAGATAGACCACGGCGAACAGGATCTGCGAC
TTGCCCGATATTCCGGCGCACGAGCGGGTCTTCCATATCTTCAGCAGCAG
TATTATGATGGCAAACACATGCGACAGATCCCCAGCAAAGCGAAAGATAT
TCATGTCGACTGATAACT
BO04014.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:56:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5183-PB | 639 | KdelR-RB | 1..636 | 654..19 | 3180 | 100 | Minus |
CG5183-PC | 639 | KdelR-RC | 1..636 | 654..19 | 3180 | 100 | Minus |
CG5183-PA | 639 | KdelR-RA | 1..636 | 654..19 | 3180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:58:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
KdelR-RC | 1679 | CG5183-RC | 218..853 | 654..19 | 3180 | 100 | Minus |
KdelR-RB | 1273 | CG5183-RB | 285..920 | 654..19 | 3180 | 100 | Minus |
KdelR-RA | 1201 | CG5183-RA | 213..848 | 654..19 | 3180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:58:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10427171..10427806 | 654..19 | 3180 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:58:14 has no hits.
BO04014.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:52:34 Download gff for
BO04014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KdelR-PC | 1..639 | 15..654 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:00:41 Download gff for
BO04014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5183-PA | 1..639 | 15..654 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:27:19 Download gff for
BO04014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KdelR-RB | 274..925 | 13..664 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:26 Download gff for
BO04014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KdelR-RA | 202..853 | 13..664 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:26 Download gff for
BO04014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10427160..10427811 | 13..664 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:27:19 Download gff for
BO04014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10427160..10427811 | 13..664 | 99 | | Minus |
BO04014.5prime Sequence
668 bp (668 high quality bases) assembled on 2006-02-03
> BO04014.5prime
GAAGTTATCAGTCGACATGAATATCTTTCGCTTTGCTGGGGATCTGTCGC
ATGTGTTTGCCATCATAATACTGCTGCTGAAGATATGGAAGACCCGCTCG
TGCGCCGGAATATCGGGCAAGTCGCAGATCCTGTTCGCCGTGGTCTATCT
GACGCGCTACCTGGATCTGTTCACCACCTACGTGAGCCTGTACAACTCGG
TGATGAAGGTGTTGTTCCTGGCCACGTCCGGTGCCACCGTGTATTTGATG
TACGTGAAGTTTAAGGCCACCTATGACCACAATCACGATTCGTTCCGCAT
CGAATTCCTGCTGGTGCCGTGCGCCCTGCTCTCGCTGGTGATCAATCATG
AGTTTACCGTGATGGAAGTGCTGTGGACATTCTCGATCTATTTGGAATCG
GTGGCCATTCTGCCGCAGCTGTTCCTAGTGAGCAGAACCGGCGAGGCCGA
GTCCATCACCAGCCACTACCTCTTCGCCCTGGGATCGTACCGTGCACTCT
ACTTGCTCAACTGGGTCTACCGGTACATGGTCGAGTCGCACTACGACCTT
ATCGCGATCTTCGCCGGAGTTGTCCAGACCGTCTTGTACTGCGACTTCTT
CTACTTATACATTACCAAAGTTCTTAAGGGCAAGAAGCTCCAGCTGCCGG
CAGCAAGCTTTCTAGACC
BO04014.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:56:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5183-PB | 639 | KdelR-RB | 1..636 | 17..652 | 3180 | 100 | Plus |
CG5183-PC | 639 | KdelR-RC | 1..636 | 17..652 | 3180 | 100 | Plus |
CG5183-PA | 639 | KdelR-RA | 1..636 | 17..652 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:50:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
KdelR-RC | 1679 | CG5183-RC | 218..853 | 17..652 | 3180 | 100 | Plus |
KdelR-RB | 1273 | CG5183-RB | 285..920 | 17..652 | 3180 | 100 | Plus |
KdelR-RA | 1201 | CG5183-RA | 213..848 | 17..652 | 3180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:50:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10427171..10427806 | 17..652 | 3180 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:50:54 has no hits.
BO04014.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:52:35 Download gff for
BO04014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KdelR-PC | 1..639 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:00:42 Download gff for
BO04014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5183-PA | 1..639 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:25 Download gff for
BO04014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KdelR-RB | 274..925 | 7..658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:39 Download gff for
BO04014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KdelR-RA | 202..853 | 7..658 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:39 Download gff for
BO04014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10427160..10427811 | 7..658 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:25 Download gff for
BO04014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10427160..10427811 | 7..658 | 99 | | Plus |
BO04014.complete Sequence
670 bp (670 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629599
> BO04014.complete
GAAGTTATCAGTCGACATGAATATCTTTCGCTTTGCTGGGGATCTGTCGC
ATGTGTTTGCCATCATAATACTGCTGCTGAAGATATGGAAGACCCGCTCG
TGCGCCGGAATATCGGGCAAGTCGCAGATCCTGTTCGCCGTGGTCTATCT
GACGCGCTACCTGGATCTGTTCACCACCTACGTGAGCCTGTACAACTCGG
TGATGAAGGTGTTGTTCCTGGCCACGTCCGGTGCCACCGTGTATTTGATG
TACGTGAAGTTTAAGGCCACCTATGACCACAATCACGATTCGTTCCGCAT
CGAATTCCTGCTGGTGCCGTGCGCCCTGCTCTCGCTGGTGATCAATCATG
AGTTTACCGTGATGGAAGTGCTGTGGACATTCTCGATCTATTTGGAATCG
GTGGCCATTCTGCCGCAGCTGTTCCTAGTGAGCAGAACCGGCGAGGCCGA
GTCCATCACCAGCCACTACCTCTTCGCCCTGGGATCGTACCGTGCACTCT
ACTTGCTCAACTGGGTCTACCGGTACATGGTCGAGTCGCACTACGACCTT
ATCGCGATCTTCGCCGGAGTTGTCCAGACCGTCTTGTACTGCGACTTCTT
CTACTTATACATTACCAAAGTTCTTAAGGGCAAGAAGCTCCAGCTGCCGG
CAGCAAGCTTTCTAGACCAT
BO04014.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:41:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
KdelR-RC | 639 | CG5183-PC | 1..636 | 17..652 | 3180 | 100 | Plus |
KdelR-RB | 639 | CG5183-PB | 1..636 | 17..652 | 3180 | 100 | Plus |
KdelR-RA | 639 | CG5183-PA | 1..636 | 17..652 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:41:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
KdelR-RC | 1679 | CG5183-RC | 218..853 | 17..652 | 3180 | 100 | Plus |
KdelR-RB | 1273 | CG5183-RB | 285..920 | 17..652 | 3180 | 100 | Plus |
KdelR-RA | 1201 | CG5183-RA | 213..848 | 17..652 | 3180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10427171..10427806 | 17..652 | 3180 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:41:28 has no hits.
BO04014.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:57 Download gff for
BO04014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KdelR-RA | 1..639 | 17..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:56 Download gff for
BO04014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KdelR-RA | 222..873 | 7..658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:12 Download gff for
BO04014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KdelR-RB | 285..920 | 17..654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:57 Download gff for
BO04014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KdelR-RA | 222..873 | 7..658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:41 Download gff for
BO04014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
KdelR-RA | 213..848 | 17..654 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:41 Download gff for
BO04014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10427171..10427806 | 17..654 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:12 Download gff for
BO04014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10427171..10427806 | 17..654 | 99 | | Plus |
BO04014.pep Sequence
Translation from 16 to 670
> BO04014.pep
MNIFRFAGDLSHVFAIIILLLKIWKTRSCAGISGKSQILFAVVYLTRYLD
LFTTYVSLYNSVMKVLFLATSGATVYLMYVKFKATYDHNHDSFRIEFLLV
PCALLSLVINHEFTVMEVLWTFSIYLESVAILPQLFLVSRTGEAESITSH
YLFALGSYRALYLLNWVYRYMVESHYDLIAIFAGVVQTVLYCDFFYLYIT
KVLKGKKLQLPAASFLDH
BO04014.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
KdelR-PC | 212 | CG5183-PC | 1..212 | 1..212 | 1084 | 100 | Plus |
KdelR-PB | 212 | CG5183-PB | 1..212 | 1..212 | 1084 | 100 | Plus |
KdelR-PA | 212 | CG5183-PA | 1..212 | 1..212 | 1084 | 100 | Plus |