Clone BO04014 Report

Search the DGRC for BO04014

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:40
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptKdelR-RA
Protein status:BO04014.pep: validated full length
Sequenced Size:670

Clone Sequence Records

BO04014.3prime Sequence

668 bp (667 high quality bases) assembled on 2005-12-01

> BO04014.3prime
ATGGTCTAGAAAGCTTGCTGCCGGCAGCTGGAGCTTCTTGCCCTTAAGAA
CTTTGGTAATGTATAAGTAGAAGAAGTCGCAGTACAAGACGGTCTGGACA
ACTCCGGCGAAGATCGCGATAAGGTCGTAGTGCGACTCGACCATGTACCG
GTAGACCCAGTTGAGCAAGTAGAGTGCACGGTACGATCCCAGGGCGAAGA
GGTAGTGGCTGGTGATGGACTCGGCCTCGCCGGTTCTGCTCACTAGGAAC
AGCTGCGGCAGAATGGCCACCGATTCCAAATAGATCGAGAATGTCCACAG
CACTTCCATCACGGTAAACTCATGATTGATCACCAGCGAGAGCAGGGCGC
ACGGCACCAGCAGGAATTCGATGCGGAACGAATCGTGATTGTGGTCATAG
GTGGCCTTAAACTTCACGTACATCAAATACACGGTGGCACCGGACGTGGC
CAGGAACAACACCTTCATCACCGAGTTGTACAGGCTCACGTAGGTGGTGA
ACAGATCCAGGTAGCGCGTCAGATAGACCACGGCGAACAGGATCTGCGAC
TTGCCCGATATTCCGGCGCACGAGCGGGTCTTCCATATCTTCAGCAGCAG
TATTATGATGGCAAACACATGCGACAGATCCCCAGCAAAGCGAAAGATAT
TCATGTCGACTGATAACT

BO04014.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5183-PB 639 KdelR-RB 1..636 654..19 3180 100 Minus
CG5183-PC 639 KdelR-RC 1..636 654..19 3180 100 Minus
CG5183-PA 639 KdelR-RA 1..636 654..19 3180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
KdelR-RC 1679 CG5183-RC 218..853 654..19 3180 100 Minus
KdelR-RB 1273 CG5183-RB 285..920 654..19 3180 100 Minus
KdelR-RA 1201 CG5183-RA 213..848 654..19 3180 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10427171..10427806 654..19 3180 100 Minus
Blast to na_te.dros performed on 2015-02-12 15:58:14 has no hits.

BO04014.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:52:34 Download gff for BO04014.3prime
Subject Subject Range Query Range Percent Splice Strand
KdelR-PC 1..639 15..654 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:00:41 Download gff for BO04014.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5183-PA 1..639 15..654 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:27:19 Download gff for BO04014.3prime
Subject Subject Range Query Range Percent Splice Strand
KdelR-RB 274..925 13..664 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:26 Download gff for BO04014.3prime
Subject Subject Range Query Range Percent Splice Strand
KdelR-RA 202..853 13..664 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:26 Download gff for BO04014.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10427160..10427811 13..664 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:27:19 Download gff for BO04014.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10427160..10427811 13..664 99   Minus

BO04014.5prime Sequence

668 bp (668 high quality bases) assembled on 2006-02-03

> BO04014.5prime
GAAGTTATCAGTCGACATGAATATCTTTCGCTTTGCTGGGGATCTGTCGC
ATGTGTTTGCCATCATAATACTGCTGCTGAAGATATGGAAGACCCGCTCG
TGCGCCGGAATATCGGGCAAGTCGCAGATCCTGTTCGCCGTGGTCTATCT
GACGCGCTACCTGGATCTGTTCACCACCTACGTGAGCCTGTACAACTCGG
TGATGAAGGTGTTGTTCCTGGCCACGTCCGGTGCCACCGTGTATTTGATG
TACGTGAAGTTTAAGGCCACCTATGACCACAATCACGATTCGTTCCGCAT
CGAATTCCTGCTGGTGCCGTGCGCCCTGCTCTCGCTGGTGATCAATCATG
AGTTTACCGTGATGGAAGTGCTGTGGACATTCTCGATCTATTTGGAATCG
GTGGCCATTCTGCCGCAGCTGTTCCTAGTGAGCAGAACCGGCGAGGCCGA
GTCCATCACCAGCCACTACCTCTTCGCCCTGGGATCGTACCGTGCACTCT
ACTTGCTCAACTGGGTCTACCGGTACATGGTCGAGTCGCACTACGACCTT
ATCGCGATCTTCGCCGGAGTTGTCCAGACCGTCTTGTACTGCGACTTCTT
CTACTTATACATTACCAAAGTTCTTAAGGGCAAGAAGCTCCAGCTGCCGG
CAGCAAGCTTTCTAGACC

BO04014.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5183-PB 639 KdelR-RB 1..636 17..652 3180 100 Plus
CG5183-PC 639 KdelR-RC 1..636 17..652 3180 100 Plus
CG5183-PA 639 KdelR-RA 1..636 17..652 3180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:50:56
Subject Length Description Subject Range Query Range Score Percent Strand
KdelR-RC 1679 CG5183-RC 218..853 17..652 3180 100 Plus
KdelR-RB 1273 CG5183-RB 285..920 17..652 3180 100 Plus
KdelR-RA 1201 CG5183-RA 213..848 17..652 3180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10427171..10427806 17..652 3180 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:50:54 has no hits.

BO04014.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:52:35 Download gff for BO04014.5prime
Subject Subject Range Query Range Percent Splice Strand
KdelR-PC 1..639 17..656 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:00:42 Download gff for BO04014.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5183-PA 1..639 17..656 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:25 Download gff for BO04014.5prime
Subject Subject Range Query Range Percent Splice Strand
KdelR-RB 274..925 7..658 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:39 Download gff for BO04014.5prime
Subject Subject Range Query Range Percent Splice Strand
KdelR-RA 202..853 7..658 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:39 Download gff for BO04014.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10427160..10427811 7..658 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:25 Download gff for BO04014.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10427160..10427811 7..658 99   Plus

BO04014.complete Sequence

670 bp (670 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629599

> BO04014.complete
GAAGTTATCAGTCGACATGAATATCTTTCGCTTTGCTGGGGATCTGTCGC
ATGTGTTTGCCATCATAATACTGCTGCTGAAGATATGGAAGACCCGCTCG
TGCGCCGGAATATCGGGCAAGTCGCAGATCCTGTTCGCCGTGGTCTATCT
GACGCGCTACCTGGATCTGTTCACCACCTACGTGAGCCTGTACAACTCGG
TGATGAAGGTGTTGTTCCTGGCCACGTCCGGTGCCACCGTGTATTTGATG
TACGTGAAGTTTAAGGCCACCTATGACCACAATCACGATTCGTTCCGCAT
CGAATTCCTGCTGGTGCCGTGCGCCCTGCTCTCGCTGGTGATCAATCATG
AGTTTACCGTGATGGAAGTGCTGTGGACATTCTCGATCTATTTGGAATCG
GTGGCCATTCTGCCGCAGCTGTTCCTAGTGAGCAGAACCGGCGAGGCCGA
GTCCATCACCAGCCACTACCTCTTCGCCCTGGGATCGTACCGTGCACTCT
ACTTGCTCAACTGGGTCTACCGGTACATGGTCGAGTCGCACTACGACCTT
ATCGCGATCTTCGCCGGAGTTGTCCAGACCGTCTTGTACTGCGACTTCTT
CTACTTATACATTACCAAAGTTCTTAAGGGCAAGAAGCTCCAGCTGCCGG
CAGCAAGCTTTCTAGACCAT

BO04014.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
KdelR-RC 639 CG5183-PC 1..636 17..652 3180 100 Plus
KdelR-RB 639 CG5183-PB 1..636 17..652 3180 100 Plus
KdelR-RA 639 CG5183-PA 1..636 17..652 3180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
KdelR-RC 1679 CG5183-RC 218..853 17..652 3180 100 Plus
KdelR-RB 1273 CG5183-RB 285..920 17..652 3180 100 Plus
KdelR-RA 1201 CG5183-RA 213..848 17..652 3180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10427171..10427806 17..652 3180 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:41:28 has no hits.

BO04014.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:57 Download gff for BO04014.complete
Subject Subject Range Query Range Percent Splice Strand
KdelR-RA 1..639 17..656 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:56 Download gff for BO04014.complete
Subject Subject Range Query Range Percent Splice Strand
KdelR-RA 222..873 7..658 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:12 Download gff for BO04014.complete
Subject Subject Range Query Range Percent Splice Strand
KdelR-RB 285..920 17..654 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:57 Download gff for BO04014.complete
Subject Subject Range Query Range Percent Splice Strand
KdelR-RA 222..873 7..658 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:41 Download gff for BO04014.complete
Subject Subject Range Query Range Percent Splice Strand
KdelR-RA 213..848 17..654 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:41 Download gff for BO04014.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10427171..10427806 17..654 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:12 Download gff for BO04014.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10427171..10427806 17..654 99   Plus

BO04014.pep Sequence

Translation from 16 to 670

> BO04014.pep
MNIFRFAGDLSHVFAIIILLLKIWKTRSCAGISGKSQILFAVVYLTRYLD
LFTTYVSLYNSVMKVLFLATSGATVYLMYVKFKATYDHNHDSFRIEFLLV
PCALLSLVINHEFTVMEVLWTFSIYLESVAILPQLFLVSRTGEAESITSH
YLFALGSYRALYLLNWVYRYMVESHYDLIAIFAGVVQTVLYCDFFYLYIT
KVLKGKKLQLPAASFLDH

BO04014.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
KdelR-PC 212 CG5183-PC 1..212 1..212 1084 100 Plus
KdelR-PB 212 CG5183-PB 1..212 1..212 1084 100 Plus
KdelR-PA 212 CG5183-PA 1..212 1..212 1084 100 Plus