Clone BO04016 Report

Search the DGRC for BO04016

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:40
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptdUTPase-RA
Protein status:BO04016.pep: validated full length
Sequenced Size:598

Clone Sequence Records

BO04016.3prime Sequence

596 bp (595 high quality bases) assembled on 2005-12-01

> BO04016.3prime
ATGGTCTAGAAAGCTTGCCGTAGCAACAGGAGCCGGAGCAGCTCCCTCCG
GTTCGGCAGCCTTTTCTCCGTTGCCGTTCTGCGCCTTGGCTGCCGGCAGA
TCCTTGACTCCGGTGGAACCGAATCCTGCCTCGCCGCGCTCGGTGTCCTC
CAGTTTGTCCACCATCACCAGTTGCGGATAGAAGATACGCTCGCAAATGA
ACTGGGCGATGCGGTCGCCATGCTTCACCTCGAAATCAACATCTGAGTGA
TTGAACAGGACGACGCCGAGATTGCCGCGATAATCCTCGTCCACCACACC
GGCGCCCACATCAATGAAGTTCTTCACCGCCAGCCCGGATCGTGGGGCTA
CGCGTCCGTAGGAGCCCTCCGGAACCTGCACTTGCAGATCGGTCTTGACA
ATGGCCTTTCCGCGTGCCGGCACCACAACGTCGTAGGCGCTGCGCAGGTC
AACTCCCGCCGCTTTGGCGGATCCCCTCACCGGCTCCAAAGCATTCTCGG
TGAGTTTGGCGAATCGCAGGACGCACGTGTCGATCTTCATCTTCTTGGCA
GCTGGAATGTCGGCGAAATCGGTTGATGGCATGTCGACTGATAACT

BO04016.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4584-PA 567 dUTPase-RA 1..564 582..19 2820 100 Minus
CG4584-PB 525 dUTPase-RB 1..522 540..19 2610 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:12:33
Subject Length Description Subject Range Query Range Score Percent Strand
dUTPase-RA 824 CG4584-RA 130..693 582..19 2820 100 Minus
dUTPase-RD 750 CG4584-RD 69..619 569..19 2755 100 Minus
dUTPase-RB 732 CG4584-RB 69..601 551..19 2665 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:12:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11011441..11012004 582..19 2820 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:12:29 has no hits.

BO04016.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:52:36 Download gff for BO04016.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4584-PA 1..567 15..582 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:00:43 Download gff for BO04016.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4584-PA 1..567 15..582 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:24:56 Download gff for BO04016.3prime
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 125..696 15..587 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:49:36 Download gff for BO04016.3prime
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 125..696 15..587 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:49:36 Download gff for BO04016.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 11011436..11012003 20..587 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:24:56 Download gff for BO04016.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11011436..11012003 20..587 99 -> Minus

BO04016.5prime Sequence

596 bp (595 high quality bases) assembled on 2005-12-01

> BO04016.5prime
GAAGTTATCAGTCGACATGCCATCAACCGATTTCGCCGACATTCCAGCTG
CCAAGAAGATGAAGATCGACACGTGCGTCCTGCGATTCGCCAAACTCACC
GAGAATGCTTTGGAGCCGGTGAGGGGATCCGCCAAAGCGGCGGGAGTTGA
CCTGCGCAGCGCCTACGACGTTGTGGTGCCGGCACGCGGAAAGGCCATTG
TCAAGACCGATCTGCAAGTGCAGGTTCCGGAGGGCTCCTACGGACGCGTA
GCCCCACGATCCGGGCTGGCGGTGAAGAACTTCATTGATGTGGGCGCCGG
TGTGGTGGACGAGGATTATCGCGGCAATCTCGGCGTCGTCCTGTTCAATC
ACTCAGATGTTGATTTCGAGGTGAAGCATGGCGACCGCATCGCCCAGTTC
ATTTGCGAGCGTATCTTCTATCCGCAACTGGTGATGGTGGACAAACTGGA
GGACACCGAGCGCGGCGAGGCAGGATTCGGTTCCACCGGAGTCAAGGATC
TGCCGGCAGCCAAGGCGCAGAACGGCAACGGAGAAAAGGCTGCCGAACCG
GAGGGAGCTGCTCCGGCTCCTGTTGCTACGGCAAGCTTTCTAGACC

BO04016.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4584-PA 567 dUTPase-RA 1..564 17..580 2820 100 Plus
CG4584-PB 525 dUTPase-RB 1..522 59..580 2610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
dUTPase-RA 824 CG4584-RA 130..693 17..580 2820 100 Plus
dUTPase-RD 750 CG4584-RD 69..619 30..580 2755 100 Plus
dUTPase-RB 732 CG4584-RB 69..601 48..580 2665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11011441..11012004 17..580 2820 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:38:43 has no hits.

BO04016.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:52:37 Download gff for BO04016.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4584-PA 1..567 17..584 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:00:45 Download gff for BO04016.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4584-PA 1..567 17..584 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:11:19 Download gff for BO04016.5prime
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 125..696 12..584 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:08:42 Download gff for BO04016.5prime
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 125..696 12..584 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:08:42 Download gff for BO04016.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11011436..11012003 12..579 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:11:19 Download gff for BO04016.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11011436..11012003 12..579 99 -> Plus

BO04016.complete Sequence

598 bp (598 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ629600

> BO04016.complete
GAAGTTATCAGTCGACATGCCATCAACCGATTTCGCCGACATTCCAGCTG
CCAAGAAGATGAAGATCGACACGTGCGTCCTGCGATTCGCCAAACTCACC
GAGAATGCTTTGGAGCCGGTGAGGGGATCCGCCAAAGCGGCGGGAGTTGA
CCTGCGCAGCGCCTACGACGTTGTGGTGCCGGCACGCGGAAAGGCCATTG
TCAAGACCGATCTGCAAGTGCAGGTTCCGGAGGGCTCCTACGGACGCGTA
GCCCCACGATCCGGGCTGGCGGTGAAGAACTTCATTGATGTGGGCGCCGG
TGTGGTGGACGAGGATTATCGCGGCAATCTCGGCGTCGTCCTGTTCAATC
ACTCAGATGTTGATTTCGAGGTGAAGCATGGCGACCGCATCGCCCAGTTC
ATTTGCGAGCGTATCTTCTATCCGCAACTGGTGATGGTGGACAAACTGGA
GGACACCGAGCGCGGCGAGGCAGGATTCGGTTCCACCGGAGTCAAGGATC
TGCCGGCAGCCAAGGCGCAGAACGGCAACGGAGAAAAGGCTGCCGAACCG
GAGGGAGCTGCTCCGGCTCCTGTTGCTACGGCAAGCTTTCTAGACCAT

BO04016.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
dUTPase-RA 567 CG4584-PA 1..564 17..580 2820 100 Plus
dUTPase-RB 525 CG4584-PB 1..522 59..580 2610 100 Plus
dUTPase-RD 525 CG4584-PD 1..522 59..580 2610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
dUTPase-RA 824 CG4584-RA 130..693 17..580 2820 100 Plus
dUTPase-RD 750 CG4584-RD 69..619 30..580 2755 100 Plus
dUTPase-RB 732 CG4584-RB 69..601 48..580 2665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11011441..11012004 17..580 2820 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:42:39 has no hits.

BO04016.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:38 Download gff for BO04016.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 1..567 17..584 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:01:02 Download gff for BO04016.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 102..673 12..584 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:20:59 Download gff for BO04016.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 130..693 17..582 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:38 Download gff for BO04016.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 102..673 12..584 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:37 Download gff for BO04016.complete
Subject Subject Range Query Range Percent Splice Strand
dUTPase-RA 130..693 17..582 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:37 Download gff for BO04016.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11011441..11012004 17..582 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:20:59 Download gff for BO04016.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11011441..11012004 17..582 99   Plus

BO04016.pep Sequence

Translation from 16 to 598

> BO04016.pep
MPSTDFADIPAAKKMKIDTCVLRFAKLTENALEPVRGSAKAAGVDLRSAY
DVVVPARGKAIVKTDLQVQVPEGSYGRVAPRSGLAVKNFIDVGAGVVDED
YRGNLGVVLFNHSDVDFEVKHGDRIAQFICERIFYPQLVMVDKLEDTERG
EAGFGSTGVKDLPAAKAQNGNGEKAAEPEGAAPAPVATASFLDH

BO04016.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:44
Subject Length Description Subject Range Query Range Score Percent Strand
dUTPase-PA 188 CG4584-PA 1..188 1..188 959 100 Plus
dUTPase-PB 174 CG4584-PB 1..174 15..188 887 100 Plus
dUTPase-PD 174 CG4584-PD 1..174 15..188 887 100 Plus
dUTPase-PC 174 CG4584-PC 1..174 15..188 887 100 Plus