Clone BO04018 Report

Search the DGRC for BO04018

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:40
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptAac11-RA
Protein status:BO04018.pep: Imported from assembly
Sequenced Size:1642

Clone Sequence Records

BO04018.5prime Sequence

334 bp (288 high quality bases) assembled on 2005-12-01

> BO04018.5prime
GAAGTTATCAGTCGACATGGACAACATAGAGCGACTGTACAAATGCTACG
AGATTCTGTCCGAGGCGGGCGATAAAATATCCGAACATGTGGATGAATAT
AAAGAGATACTCAAGGCCGTGAAGGGCACGTCGAAGGAGAAGCGCCTGGC
ATCGCAGTTCATTGGTAACTTCTTCAAACACTTTCCGGATTTGGCCGACA
CAGCCATAGACGCGCAGTTTGATTTGTGCGAGGATGACGACACACAGATC
CGCCGCCAGGCCATCAAAGATCTGCCGAAACTGTGCCAGGGAAACGCAGA
TGCTACCATCCGAGTGGGTGATACTCTGGCCCAG

BO04018.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6582-PA 1611 Aac11-RA 1..318 17..334 1590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
Aac11-RA 2458 CG6582-RA 172..489 17..334 1590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17477399..17477560 247..86 810 100 Minus
2L 23513712 2L 17477140..17477228 334..246 445 100 Minus
2L 23513712 2L 17477649..17477717 85..17 345 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:07:59 has no hits.

BO04018.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:52:41 Download gff for BO04018.5prime
Subject Subject Range Query Range Percent Splice Strand
Aac11-PA 1..318 17..334 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:00:51 Download gff for BO04018.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6582-PA 1..318 17..334 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:00:30 Download gff for BO04018.5prime
Subject Subject Range Query Range Percent Splice Strand
Aac11-RA 167..489 10..334 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:44:05 Download gff for BO04018.5prime
Subject Subject Range Query Range Percent Splice Strand
Aac11-RA 167..489 10..334 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:44:05 Download gff for BO04018.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 17477140..17477226 248..334 100 <- Minus
2L 17477399..17477560 86..247 100 <- Minus
2L 17477649..17477722 10..85 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:00:30 Download gff for BO04018.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17477140..17477226 248..334 100 <- Minus
arm_2L 17477399..17477560 86..247 100 <- Minus
arm_2L 17477649..17477722 10..85 94   Minus

BO04018.3prime Sequence

446 bp (407 high quality bases) assembled on 2005-12-01

> BO04018.3prime
ATGGTCTAGAAAGCTTGCGTACTTGTTGAATCGCCTGTTTCTGTAGCCTC
CACCGCTGCCGCCACCGCCGCCGCCGCCACGTTGTCTCGTGCGATTGTTG
TTTCCGTAGCTCTGGTTGACCTTGTTGGAGTATTTTCCAGATGGCGGCGA
GTAAAACTTCTGATCGTTGGATGGCCGCGATTTCTTCTCTGGCTCCTGAT
CCTTATCCTTGCCGTTAGCAGCGGCTTTCTCCCCAAAAGTGATGGGTGCA
TGACGCTTGCCCAGCTTGTTATTTTTTGGCACAATCCAGGAGAGCACAAT
GTCATGTTTGAATATGGGCGGTGAATGAAATAGATCCCGGATCAGAATGT
TGATGTTTGATGTCGTCTTCAGTGCCGTCTGCTTCAGTTGGTTCTCCTCC
GTTTTGAGCTCCCTCTCCGTCTTGCCTTTGAGCGACTCCTCCAGTT

BO04018.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG6582-PA 1611 Aac11-RA 1215..1608 412..19 1970 100 Minus
CG6582-PA 1611 Aac11-RA 1181..1210 446..417 150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
Aac11-RA 2458 CG6582-RA 1352..1779 446..19 2095 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17475591..17475842 19..270 1260 100 Plus
2L 23513712 2L 17475910..17476085 271..446 820 97.7 Plus
Blast to na_te.dros performed on 2015-02-12 15:58:19 has no hits.

BO04018.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:52:40 Download gff for BO04018.3prime
Subject Subject Range Query Range Percent Splice Strand
Aac11-PA 1181..1611 15..446 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:00:49 Download gff for BO04018.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6582-PA 1181..1611 15..446 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:27:21 Download gff for BO04018.3prime
Subject Subject Range Query Range Percent Splice Strand
Aac11-RA 1352..1783 14..446 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:35 Download gff for BO04018.3prime
Subject Subject Range Query Range Percent Splice Strand
Aac11-RA 1352..1783 14..446 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:35 Download gff for BO04018.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 17475587..17475842 14..270 99 <- Plus
2L 17475910..17476085 271..446 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:27:21 Download gff for BO04018.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17475587..17475842 14..270 99 <- Plus
arm_2L 17475910..17476085 271..446 98   Plus

BO04018.complete Sequence

1642 bp assembled on 2010-06-24

GenBank Submission: KX797530

> BO04018.complete
GAAGTTATCAGTCGACATGGACAACATAGAGCGACTGTACAAATGCTACG
AGATTCTGTCCGAGGCGGGCGATAAAATATCCGAACATGTGGATGAATAT
AAAGAGATACTCAAGGCCGTGAAGGGCACGTCGAAGGAGAAGCGCCTGGC
ATCGCAGTTCATTGGTAACTTCTTCAAACACTTTCCGGATTTGGCCGACA
CAGCCATAGACGCGCAGTTTGATTTGTGCGAGGATGACGACACACAGATC
CGCCGCCAGGCCATCAAAGATCTGCCGAAACTGTGCCAGGGAAACGCAGA
TGCTACCATCCGAGTGGGTGATACTCTGGCCCAGCTGTTAATCCTGGACG
ATCCCACAGAACTCCAGCAGGTCAACAACTCACTGCTGGCCATCATAAAA
TTGGACACCAAGAGCTCCATCGCCGGATTGTTTCAGCAAATCTCCACTGG
GGATGAAACGACAAGGGAGCGCTGCCTCAAGTTCATTGCCACCAAGCTGC
TGACCATGGGTCCCACAGTTATTACCAAGGAAATCGAGGACTATATCGTG
GAGGAGATCAAAAAGGCTTTGCAGGATGTCACTGCCGATGAGTTTCATCT
GTGCATGACAATTCTGGGAGCCACCAAACTGGGAAGCACCATCACGGGAC
ACGCCGAGCTCGTCAAGCTGGCCACGGAGCAGGCGGAGCTAAATAACACA
GACGCGGACATCATAGCCGTCGACGACGAGGTGGTGGAGCGATTCATTCA
GTGCGCCTCTGCTGCGGCTCCTTACTTTTCGAAAACCATCAAATCCACGG
CCTTCGTGGCTCACGTTTGCGATAAACTGTTGCCCATCAAGACCTGGAAC
ATGATCGCCACTGCAGTTTCGCAAGATCAAATCCAACTTAGATTACTAAA
GGTATTCGCCGAGATGATAACCAACACAGACAAGCTGGACAATGCCAGCG
AACGGATTAATGCAGTCTACAATGTATTGCTGGAATACATGCCTTTGCCA
AAGCTGAGTGACGAGGATCTGGGAGATACACCGCCCTCGTTTCAGTTTTC
GCACGCCGAGTGCTTACTGTACGCATTGCACACTCTTGGAAAAAATCATC
CAAATAGTTTAAGTTTCGTCGAGGATGCAGAGAAACTAAAAGACTTTCGA
GCTAGATTGCAATATCTTGCAAGGGGAACACAGGGTTATATTAAGAAACT
GGAGGAGTCGCTCAAAGGCAAGACGGGAGAGGAGCTCAAAACGGAGGAGA
ACCAACTGAAGCAGACGGCACTGAAGACGACATCAAACATCAACATTCTG
ATCCGGGATCTATTTCATTCACCGCCCATATTCAAACATGACATTGTGCT
CTCCTGGATTGTGCCAAAAAATAACAAGCTGGGCAAGCGTCATGCACCCA
TCACTTTTGGGGAGAAAGCCGCTGCTAACGGCAAGGATAAGGATCAGGAG
CCAGAGAAGAAATCGCGGCCATCCAACGATCAGAAGTTTTACTCGCCGCC
ATCTGGAAAATACTCCAACAAGGTCAACCAGAGCTACGGAAACAACAATC
GCACGAGACAACGTGGCGGCGGCGGCGGTGGCGGCAGCGGTGGAGGCTAC
AGAAACAGGCGATTCAACAAGTACGCAAGCTTTCTAGACCAT

BO04018.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
Aac11-RA 1611 CG6582-PA 1..1608 17..1624 8040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
Aac11-RA 2458 CG6582-RA 172..1779 17..1624 8040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17476693..17477228 781..246 2680 100 Minus
2L 23513712 2L 17475591..17475842 1624..1373 1260 100 Minus
2L 23513712 2L 17476159..17476362 1185..982 1020 100 Minus
2L 23513712 2L 17476416..17476618 983..781 1015 100 Minus
2L 23513712 2L 17475910..17476097 1372..1185 940 100 Minus
2L 23513712 2L 17477399..17477560 247..86 810 100 Minus
2L 23513712 2L 17477649..17477717 85..17 345 100 Minus
Blast to na_te.dros performed on 2014-11-28 07:44:08 has no hits.

BO04018.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-24 14:15:32 Download gff for BO04018.complete
Subject Subject Range Query Range Percent Splice Strand
Aac11-RA 170..1777 17..1626 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:46 Download gff for BO04018.complete
Subject Subject Range Query Range Percent Splice Strand
Aac11-RA 172..1779 17..1626 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:02:48 Download gff for BO04018.complete
Subject Subject Range Query Range Percent Splice Strand
Aac11-RA 172..1779 17..1626 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:02:48 Download gff for BO04018.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17477399..17477560 86..247 100 <- Minus
2L 17477649..17477717 17..85 100   Minus
2L 17475589..17475842 1373..1626 99 <- Minus
2L 17475910..17476096 1186..1372 100 <- Minus
2L 17476159..17476361 983..1185 100 <- Minus
2L 17476417..17476617 782..982 100 <- Minus
2L 17476693..17477226 248..781 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:46 Download gff for BO04018.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17475589..17475842 1373..1626 99 <- Minus
arm_2L 17475910..17476096 1186..1372 100 <- Minus
arm_2L 17476159..17476361 983..1185 100 <- Minus
arm_2L 17476417..17476617 782..982 100 <- Minus
arm_2L 17476693..17477226 248..781 100 <- Minus
arm_2L 17477399..17477560 86..247 100 <- Minus
arm_2L 17477649..17477717 17..85 100   Minus

BO04018.pep Sequence

Translation from 16 to 1642

> BO04018.pep
MDNIERLYKCYEILSEAGDKISEHVDEYKEILKAVKGTSKEKRLASQFIG
NFFKHFPDLADTAIDAQFDLCEDDDTQIRRQAIKDLPKLCQGNADATIRV
GDTLAQLLILDDPTELQQVNNSLLAIIKLDTKSSIAGLFQQISTGDETTR
ERCLKFIATKLLTMGPTVITKEIEDYIVEEIKKALQDVTADEFHLCMTIL
GATKLGSTITGHAELVKLATEQAELNNTDADIIAVDDEVVERFIQCASAA
APYFSKTIKSTAFVAHVCDKLLPIKTWNMIATAVSQDQIQLRLLKVFAEM
ITNTDKLDNASERINAVYNVLLEYMPLPKLSDEDLGDTPPSFQFSHAECL
LYALHTLGKNHPNSLSFVEDAEKLKDFRARLQYLARGTQGYIKKLEESLK
GKTGEELKTEENQLKQTALKTTSNINILIRDLFHSPPIFKHDIVLSWIVP
KNNKLGKRHAPITFGEKAAANGKDKDQEPEKKSRPSNDQKFYSPPSGKYS
NKVNQSYGNNNRTRQRGGGGGGGSGGGYRNRRFNKYASFLDH

BO04018.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:42:47
Subject Length Description Subject Range Query Range Score Percent Strand
Aac11-PA 536 CG6582-PA 1..536 1..536 2758 100 Plus