Clone Sequence Records
BO04018.5prime Sequence
334 bp (288 high quality bases) assembled on 2005-12-01
> BO04018.5prime
GAAGTTATCAGTCGACATGGACAACATAGAGCGACTGTACAAATGCTACG
AGATTCTGTCCGAGGCGGGCGATAAAATATCCGAACATGTGGATGAATAT
AAAGAGATACTCAAGGCCGTGAAGGGCACGTCGAAGGAGAAGCGCCTGGC
ATCGCAGTTCATTGGTAACTTCTTCAAACACTTTCCGGATTTGGCCGACA
CAGCCATAGACGCGCAGTTTGATTTGTGCGAGGATGACGACACACAGATC
CGCCGCCAGGCCATCAAAGATCTGCCGAAACTGTGCCAGGGAAACGCAGA
TGCTACCATCCGAGTGGGTGATACTCTGGCCCAG
BO04018.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6582-PA | 1611 | Aac11-RA | 1..318 | 17..334 | 1590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:08:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aac11-RA | 2458 | CG6582-RA | 172..489 | 17..334 | 1590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:07:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17477399..17477560 | 247..86 | 810 | 100 | Minus |
2L | 23513712 | 2L | 17477140..17477228 | 334..246 | 445 | 100 | Minus |
2L | 23513712 | 2L | 17477649..17477717 | 85..17 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:07:59 has no hits.
BO04018.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:52:41 Download gff for
BO04018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aac11-PA | 1..318 | 17..334 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:00:51 Download gff for
BO04018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6582-PA | 1..318 | 17..334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:00:30 Download gff for
BO04018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aac11-RA | 167..489 | 10..334 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:44:05 Download gff for
BO04018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aac11-RA | 167..489 | 10..334 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:44:05 Download gff for
BO04018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17477140..17477226 | 248..334 | 100 | <- | Minus |
2L | 17477399..17477560 | 86..247 | 100 | <- | Minus |
2L | 17477649..17477722 | 10..85 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:00:30 Download gff for
BO04018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17477140..17477226 | 248..334 | 100 | <- | Minus |
arm_2L | 17477399..17477560 | 86..247 | 100 | <- | Minus |
arm_2L | 17477649..17477722 | 10..85 | 94 | | Minus |
BO04018.3prime Sequence
446 bp (407 high quality bases) assembled on 2005-12-01
> BO04018.3prime
ATGGTCTAGAAAGCTTGCGTACTTGTTGAATCGCCTGTTTCTGTAGCCTC
CACCGCTGCCGCCACCGCCGCCGCCGCCACGTTGTCTCGTGCGATTGTTG
TTTCCGTAGCTCTGGTTGACCTTGTTGGAGTATTTTCCAGATGGCGGCGA
GTAAAACTTCTGATCGTTGGATGGCCGCGATTTCTTCTCTGGCTCCTGAT
CCTTATCCTTGCCGTTAGCAGCGGCTTTCTCCCCAAAAGTGATGGGTGCA
TGACGCTTGCCCAGCTTGTTATTTTTTGGCACAATCCAGGAGAGCACAAT
GTCATGTTTGAATATGGGCGGTGAATGAAATAGATCCCGGATCAGAATGT
TGATGTTTGATGTCGTCTTCAGTGCCGTCTGCTTCAGTTGGTTCTCCTCC
GTTTTGAGCTCCCTCTCCGTCTTGCCTTTGAGCGACTCCTCCAGTT
BO04018.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6582-PA | 1611 | Aac11-RA | 1215..1608 | 412..19 | 1970 | 100 | Minus |
CG6582-PA | 1611 | Aac11-RA | 1181..1210 | 446..417 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:58:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aac11-RA | 2458 | CG6582-RA | 1352..1779 | 446..19 | 2095 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:58:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17475591..17475842 | 19..270 | 1260 | 100 | Plus |
2L | 23513712 | 2L | 17475910..17476085 | 271..446 | 820 | 97.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:58:19 has no hits.
BO04018.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:52:40 Download gff for
BO04018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aac11-PA | 1181..1611 | 15..446 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:00:49 Download gff for
BO04018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6582-PA | 1181..1611 | 15..446 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:27:21 Download gff for
BO04018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aac11-RA | 1352..1783 | 14..446 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:35 Download gff for
BO04018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aac11-RA | 1352..1783 | 14..446 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:35 Download gff for
BO04018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17475587..17475842 | 14..270 | 99 | <- | Plus |
2L | 17475910..17476085 | 271..446 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:27:21 Download gff for
BO04018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17475587..17475842 | 14..270 | 99 | <- | Plus |
arm_2L | 17475910..17476085 | 271..446 | 98 | | Plus |
BO04018.complete Sequence
1642 bp assembled on 2010-06-24
GenBank Submission: KX797530
> BO04018.complete
GAAGTTATCAGTCGACATGGACAACATAGAGCGACTGTACAAATGCTACG
AGATTCTGTCCGAGGCGGGCGATAAAATATCCGAACATGTGGATGAATAT
AAAGAGATACTCAAGGCCGTGAAGGGCACGTCGAAGGAGAAGCGCCTGGC
ATCGCAGTTCATTGGTAACTTCTTCAAACACTTTCCGGATTTGGCCGACA
CAGCCATAGACGCGCAGTTTGATTTGTGCGAGGATGACGACACACAGATC
CGCCGCCAGGCCATCAAAGATCTGCCGAAACTGTGCCAGGGAAACGCAGA
TGCTACCATCCGAGTGGGTGATACTCTGGCCCAGCTGTTAATCCTGGACG
ATCCCACAGAACTCCAGCAGGTCAACAACTCACTGCTGGCCATCATAAAA
TTGGACACCAAGAGCTCCATCGCCGGATTGTTTCAGCAAATCTCCACTGG
GGATGAAACGACAAGGGAGCGCTGCCTCAAGTTCATTGCCACCAAGCTGC
TGACCATGGGTCCCACAGTTATTACCAAGGAAATCGAGGACTATATCGTG
GAGGAGATCAAAAAGGCTTTGCAGGATGTCACTGCCGATGAGTTTCATCT
GTGCATGACAATTCTGGGAGCCACCAAACTGGGAAGCACCATCACGGGAC
ACGCCGAGCTCGTCAAGCTGGCCACGGAGCAGGCGGAGCTAAATAACACA
GACGCGGACATCATAGCCGTCGACGACGAGGTGGTGGAGCGATTCATTCA
GTGCGCCTCTGCTGCGGCTCCTTACTTTTCGAAAACCATCAAATCCACGG
CCTTCGTGGCTCACGTTTGCGATAAACTGTTGCCCATCAAGACCTGGAAC
ATGATCGCCACTGCAGTTTCGCAAGATCAAATCCAACTTAGATTACTAAA
GGTATTCGCCGAGATGATAACCAACACAGACAAGCTGGACAATGCCAGCG
AACGGATTAATGCAGTCTACAATGTATTGCTGGAATACATGCCTTTGCCA
AAGCTGAGTGACGAGGATCTGGGAGATACACCGCCCTCGTTTCAGTTTTC
GCACGCCGAGTGCTTACTGTACGCATTGCACACTCTTGGAAAAAATCATC
CAAATAGTTTAAGTTTCGTCGAGGATGCAGAGAAACTAAAAGACTTTCGA
GCTAGATTGCAATATCTTGCAAGGGGAACACAGGGTTATATTAAGAAACT
GGAGGAGTCGCTCAAAGGCAAGACGGGAGAGGAGCTCAAAACGGAGGAGA
ACCAACTGAAGCAGACGGCACTGAAGACGACATCAAACATCAACATTCTG
ATCCGGGATCTATTTCATTCACCGCCCATATTCAAACATGACATTGTGCT
CTCCTGGATTGTGCCAAAAAATAACAAGCTGGGCAAGCGTCATGCACCCA
TCACTTTTGGGGAGAAAGCCGCTGCTAACGGCAAGGATAAGGATCAGGAG
CCAGAGAAGAAATCGCGGCCATCCAACGATCAGAAGTTTTACTCGCCGCC
ATCTGGAAAATACTCCAACAAGGTCAACCAGAGCTACGGAAACAACAATC
GCACGAGACAACGTGGCGGCGGCGGCGGTGGCGGCAGCGGTGGAGGCTAC
AGAAACAGGCGATTCAACAAGTACGCAAGCTTTCTAGACCAT
BO04018.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:44:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aac11-RA | 1611 | CG6582-PA | 1..1608 | 17..1624 | 8040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:44:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aac11-RA | 2458 | CG6582-RA | 172..1779 | 17..1624 | 8040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:44:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17476693..17477228 | 781..246 | 2680 | 100 | Minus |
2L | 23513712 | 2L | 17475591..17475842 | 1624..1373 | 1260 | 100 | Minus |
2L | 23513712 | 2L | 17476159..17476362 | 1185..982 | 1020 | 100 | Minus |
2L | 23513712 | 2L | 17476416..17476618 | 983..781 | 1015 | 100 | Minus |
2L | 23513712 | 2L | 17475910..17476097 | 1372..1185 | 940 | 100 | Minus |
2L | 23513712 | 2L | 17477399..17477560 | 247..86 | 810 | 100 | Minus |
2L | 23513712 | 2L | 17477649..17477717 | 85..17 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 07:44:08 has no hits.
BO04018.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-24 14:15:32 Download gff for
BO04018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aac11-RA | 170..1777 | 17..1626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:46 Download gff for
BO04018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aac11-RA | 172..1779 | 17..1626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:02:48 Download gff for
BO04018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aac11-RA | 172..1779 | 17..1626 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:02:48 Download gff for
BO04018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17477399..17477560 | 86..247 | 100 | <- | Minus |
2L | 17477649..17477717 | 17..85 | 100 | | Minus |
2L | 17475589..17475842 | 1373..1626 | 99 | <- | Minus |
2L | 17475910..17476096 | 1186..1372 | 100 | <- | Minus |
2L | 17476159..17476361 | 983..1185 | 100 | <- | Minus |
2L | 17476417..17476617 | 782..982 | 100 | <- | Minus |
2L | 17476693..17477226 | 248..781 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:46 Download gff for
BO04018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17475589..17475842 | 1373..1626 | 99 | <- | Minus |
arm_2L | 17475910..17476096 | 1186..1372 | 100 | <- | Minus |
arm_2L | 17476159..17476361 | 983..1185 | 100 | <- | Minus |
arm_2L | 17476417..17476617 | 782..982 | 100 | <- | Minus |
arm_2L | 17476693..17477226 | 248..781 | 100 | <- | Minus |
arm_2L | 17477399..17477560 | 86..247 | 100 | <- | Minus |
arm_2L | 17477649..17477717 | 17..85 | 100 | | Minus |
BO04018.pep Sequence
Translation from 16 to 1642
> BO04018.pep
MDNIERLYKCYEILSEAGDKISEHVDEYKEILKAVKGTSKEKRLASQFIG
NFFKHFPDLADTAIDAQFDLCEDDDTQIRRQAIKDLPKLCQGNADATIRV
GDTLAQLLILDDPTELQQVNNSLLAIIKLDTKSSIAGLFQQISTGDETTR
ERCLKFIATKLLTMGPTVITKEIEDYIVEEIKKALQDVTADEFHLCMTIL
GATKLGSTITGHAELVKLATEQAELNNTDADIIAVDDEVVERFIQCASAA
APYFSKTIKSTAFVAHVCDKLLPIKTWNMIATAVSQDQIQLRLLKVFAEM
ITNTDKLDNASERINAVYNVLLEYMPLPKLSDEDLGDTPPSFQFSHAECL
LYALHTLGKNHPNSLSFVEDAEKLKDFRARLQYLARGTQGYIKKLEESLK
GKTGEELKTEENQLKQTALKTTSNINILIRDLFHSPPIFKHDIVLSWIVP
KNNKLGKRHAPITFGEKAAANGKDKDQEPEKKSRPSNDQKFYSPPSGKYS
NKVNQSYGNNNRTRQRGGGGGGGSGGGYRNRRFNKYASFLDH
BO04018.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:42:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aac11-PA | 536 | CG6582-PA | 1..536 | 1..536 | 2758 | 100 | Plus |