Clone Sequence Records
BO04024.3prime Sequence
858 bp (789 high quality bases) assembled on 2005-12-01
> BO04024.3prime
ATGGTCTAGAAAGCTTGCCGACAGCTTCTTAGCCTTCTGGTACAGTGTGT
CCACCACCTTACCCATACTTTGTATGGTTTCCAGCACGCGTTCATAGGTC
TTGTCCACGGGCGTCTCTTCGAAAACAATCAGTACTCCCTCACCCTGATC
CAGAATGCCGCTGAACTTTTTGTCCAGGATCATTTGGGACAGCTTCTTTT
CCACCTGCGGCATGGGCAGCTGAATGCTCTCGGCAACATGGGCGACCTGC
ACACGAGAGTAGGGTTCAATGATGCGGCACAAGTTTTGCTCCAACATGGT
GTCGTATAACGTGCCCAAATGCGCCTGCACAATCACATCCTCGGCGAGCT
CCTTTTTGTATTCCTTGAGGGCAGCCTGGAAGTCGGCCAGGGAACGTTTG
TGTGAAGCCTCAGCCACTGATTTCATAGCATCTATATCGCGGCCCGAATA
GGTAATAGCCAGCTTTCCACTGACGAGCTGGTTGACATCATCGGACTGTC
CCAACATGATTTTGCACAGCAACATGTATTTAAGCGAGGTCAAGGCCTTG
ACGCTGTCCACGCTGTCGAATCCTTCAAAGGCCTCGTAGAAATAGGAGAA
TGCGGTCTTAAAGTCACGCTCATCAGCCGCATGTAGGATGCCGGACTGAA
GATCCAGTGCGCCTTGCACCTTTGGCGGACAGTAGATAGCATTGGCCGTG
GTGCGGGCTGAGGTGAGGGCGGCCCTAGCCTTGGGCAGGTTGCTCAGTGC
GTGATAGGTTTTGCTCTCCAGCAGCTGCACTTCCACCAGCAGATTCTTGT
CATCCAGCTTTTTCAGCTCGCGCAGCAATTGGGCACCCAGAGCCCAGGCC
TCCGTGTA
BO04024.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10149-PA | 1320 | Rpn6-RA | 478..1317 | 858..19 | 4175 | 99.8 | Minus |
CG10149-PB | 1269 | Rpn6-RB | 427..1266 | 858..19 | 4175 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:08:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn6-RC | 1662 | CG10149-RC | 500..1339 | 858..19 | 4185 | 99.9 | Minus |
Rpn6-RB | 1827 | CG10149-RB | 665..1504 | 858..19 | 4185 | 99.9 | Minus |
Rpn6-RA | 1612 | CG10149-RA | 552..1391 | 858..19 | 4185 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:08:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14751144..14751543 | 459..858 | 1985 | 99.8 | Plus |
2R | 25286936 | 2R | 14750489..14750720 | 19..250 | 1160 | 100 | Plus |
2R | 25286936 | 2R | 14750781..14750996 | 245..460 | 1080 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:08:17 has no hits.
BO04024.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:52:47 Download gff for
BO04024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn6-PB | 428..1269 | 15..857 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:00:59 Download gff for
BO04024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10149-PB | 428..1269 | 15..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:00:32 Download gff for
BO04024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn6-RA | 553..1396 | 13..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:44:12 Download gff for
BO04024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn6-RA | 553..1396 | 13..857 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:44:12 Download gff for
BO04024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14750484..14750716 | 13..246 | 99 | <- | Plus |
2R | 14750783..14750995 | 247..459 | 100 | <- | Plus |
2R | 14751145..14751542 | 460..857 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:00:32 Download gff for
BO04024.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10637989..10638221 | 13..246 | 99 | <- | Plus |
arm_2R | 10638288..10638500 | 247..459 | 100 | <- | Plus |
arm_2R | 10638650..10639047 | 460..857 | 99 | | Plus |
BO04024.5prime Sequence
881 bp (819 high quality bases) assembled on 2005-12-01
> BO04024.5prime
GAAGTTATCAGTCGACATGGCCGGAGCAACACTTTTCGAGCGTGCCCAGG
CATTGTCCAGCGTGAATCGCGAGGAGCAGGATAGTTCGCTGCTGAACAAA
CTGGTCCGCGACCAGGAGGGCGCCGAGAACGATGAGGAGCGCATCCGAAT
CAAGGAGCAGGGCATTCTGCAGCAGGGCGAGCTCTACAAGCAGGAGGGCA
AGGCCAAGGAGCTGGCCGATCTCATCAAGGTGACGCGTCCGTTCCTCAGC
TCGATCAGCAAGGCCAAGGCGGCCAAGCTGGTGCGTTCGCTGGTGGACAT
GTTCCTGGACATGGACGCGGGCACAGGCATTGAGGTTCAATTGTGTAAAG
ACTGCATTGAGTGGGCCAAACAGGAGAAGCGCACATTTCTTCGCCAATCG
CTGGAAGCTCGTCTGATTGCCTTATATTTTGATACTGCTTTGTACACGGA
GGCCTTGGCTCTGGGTGCCCAATTGCTGCGCGAGCTGAAAAAGCTGGATG
ACAAGAATCTGCTGGTGGAAGTGCAGCTGCTGGAGAGCAAAACCTATCAC
GCACTGAGCAACCTGCCCAAGGCTAGGGCCGCCCTCACCTCAGCCCGCAC
CACGGCCAATGCTATCTACTGTCCGCCAAAGGTGCAAGGCGCACTGGATC
TTCAGTCCGGCATCCTACATGCGGCTGATGAGCGTGACTTTAAGACCGCA
TTCTCCTATTTCTACGAGGCCTTTGAAGGATTCGACAGCGTGGACAGCGT
CAAGGCCTTGACCTCGCTTAAATACATGTTGCTGTGCAAAATCATGTTGG
GACAGTCCGATGATGTCAACCAGCTCGTCAGTGGAAAGCTGGCTATTACC
TATTCGGGCCGCGATATAGATGCTATGAAAT
BO04024.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10149-PA | 1320 | Rpn6-RA | 52..916 | 17..881 | 4325 | 100 | Plus |
CG10149-PB | 1269 | Rpn6-RB | 1..865 | 17..881 | 4325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:58:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn6-RC | 1662 | CG10149-RC | 74..938 | 17..881 | 4325 | 100 | Plus |
Rpn6-RB | 1827 | CG10149-RB | 239..1103 | 17..881 | 4325 | 100 | Plus |
Rpn6-RA | 1612 | CG10149-RA | 126..990 | 17..881 | 4325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:58:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14751144..14751653 | 842..333 | 2550 | 100 | Minus |
2R | 25286936 | 2R | 14751714..14752033 | 336..17 | 1600 | 100 | Minus |
2R | 25286936 | 2R | 14750956..14750996 | 881..841 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:58:26 has no hits.
BO04024.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:52:48 Download gff for
BO04024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn6-PB | 1..865 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:00 Download gff for
BO04024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10149-PB | 1..865 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:27:23 Download gff for
BO04024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn6-RA | 119..990 | 8..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:44 Download gff for
BO04024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn6-RA | 119..990 | 8..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:44 Download gff for
BO04024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14750956..14750995 | 842..881 | 100 | <- | Minus |
2R | 14751145..14751651 | 335..841 | 100 | <- | Minus |
2R | 14751716..14752047 | 5..334 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:27:23 Download gff for
BO04024.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10638461..10638500 | 842..881 | 100 | <- | Minus |
arm_2R | 10638650..10639156 | 335..841 | 100 | <- | Minus |
arm_2R | 10639221..10639552 | 5..334 | 98 | | Minus |
BO04024.complete Sequence
1300 bp (1300 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629602
> BO04024.complete
GAAGTTATCAGTCGACATGGCCGGAGCAACACTTTTCGAGCGTGCCCAGG
CATTGTCCAGCGTGAATCGCGAGGAGCAGGATAGTTCGCTGCTGAACAAA
CTGGTCCGCGACCAGGAGGGCGCCGAGAACGATGAGGAGCGCATCCGAAT
CAAGGAGCAGGGCATTCTGCAGCAGGGCGAGCTCTACAAGCAGGAGGGCA
AGGCCAAGGAGCTGGCCGATCTCATCAAGGTGACGCGTCCGTTCCTCAGC
TCGATCAGCAAGGCCAAGGCGGCCAAGCTGGTGCGTTCGCTGGTGGACAT
GTTCCTGGACATGGACGCGGGCACAGGCATTGAGGTTCAATTGTGTAAAG
ACTGCATTGAGTGGGCCAAACAGGAGAAGCGCACATTTCTTCGCCAATCG
CTGGAAGCTCGTCTGATTGCCTTATATTTTGATACTGCTTTGTACACGGA
GGCCTTGGCTCTGGGTGCCCAATTGCTGCGCGAGCTGAAAAAGCTGGATG
ACAAGAATCTGCTGGTGGAAGTGCAGCTGCTGGAGAGCAAAACCTATCAC
GCACTGAGCAACCTGCCCAAGGCTAGGGCCGCCCTCACCTCAGCCCGCAC
CACGGCCAATGCTATCTACTGTCCGCCAAAGGTGCAAGGCGCACTGGATC
TTCAGTCCGGCATCCTACATGCGGCTGATGAGCGTGACTTTAAGACCGCA
TTCTCCTATTTCTACGAGGCCTTTGAAGGATTCGACAGCGTGGACAGCGT
CAAGGCCTTGACCTCGCTTAAATACATGTTGCTGTGCAAAATCATGTTGG
GACAGTCCGATGATGTCAACCAGCTCGTCAGTGGAAAGCTGGCTATTACC
TATTCGGGCCGCGATATAGATGCTATGAAATCAGTGGCTGAGGCTTCACA
CAAACGTTCCCTGGCCGACTTCCAGGCTGCCCTCAAGGAATACAAAAAGG
AGCTCGCCGAGGATGTGATTGTGCAGGCGCATTTGGGCACGTTATACGAC
ACCATGTTGGAGCAAAACTTGTGCCGCATCATTGAACCCTACTCTCGTGT
GCAGGTCGCCCATGTTGCCGAGAGCATTCAGCTGCCCATGCCGCAGGTGG
AAAAGAAGCTGTCCCAAATGATCCTGGACAAAAAGTTCAGCGGCATTCTG
GATCAGGGTGAGGGAGTACTGATTGTTTTCGAAGAGACGCCCGTGGACAA
GACCTATGAACGCGTGCTGGAAACCATACAAAGTATGGGTAAGGTGGTGG
ACACACTGTACCAGAAGGCTAAGAAGCTGTCGGCAAGCTTTCTAGACCAT
BO04024.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:42:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn6-RC | 1269 | CG10149-PC | 1..1266 | 17..1282 | 6330 | 100 | Plus |
Rpn6-RB | 1269 | CG10149-PB | 1..1266 | 17..1282 | 6330 | 100 | Plus |
Rpn6-RA | 1320 | CG10149-PA | 52..1317 | 17..1282 | 6330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:42:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn6-RC | 1662 | CG10149-RC | 74..1339 | 17..1282 | 6330 | 100 | Plus |
Rpn6-RB | 1827 | CG10149-RB | 239..1504 | 17..1282 | 6330 | 100 | Plus |
Rpn6-RA | 1612 | CG10149-RA | 126..1391 | 17..1282 | 6330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:42:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14751144..14751653 | 842..333 | 2550 | 100 | Minus |
2R | 25286936 | 2R | 14751714..14752033 | 336..17 | 1600 | 100 | Minus |
2R | 25286936 | 2R | 14750489..14750720 | 1282..1051 | 1160 | 100 | Minus |
2R | 25286936 | 2R | 14750781..14750996 | 1056..841 | 1080 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:42:53 has no hits.
BO04024.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:58 Download gff for
BO04024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn6-RB | 1..1269 | 17..1286 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:58 Download gff for
BO04024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn6-RB | 272..1556 | 5..1288 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:07 Download gff for
BO04024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn6-RA | 126..1391 | 17..1284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:58 Download gff for
BO04024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn6-RB | 272..1556 | 5..1288 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:41 Download gff for
BO04024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpn6-RA | 126..1391 | 17..1284 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:41 Download gff for
BO04024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14750487..14750716 | 1055..1284 | 99 | <- | Minus |
2R | 14750783..14750995 | 842..1054 | 100 | <- | Minus |
2R | 14751145..14751651 | 335..841 | 100 | <- | Minus |
2R | 14751716..14752033 | 17..334 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:07 Download gff for
BO04024.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10637992..10638221 | 1055..1284 | 99 | <- | Minus |
arm_2R | 10638288..10638500 | 842..1054 | 100 | <- | Minus |
arm_2R | 10638650..10639156 | 335..841 | 100 | <- | Minus |
arm_2R | 10639221..10639538 | 17..334 | 100 | | Minus |
BO04024.pep Sequence
Translation from 16 to 1300
> BO04024.pep
MAGATLFERAQALSSVNREEQDSSLLNKLVRDQEGAENDEERIRIKEQGI
LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMD
AGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALG
AQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI
YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTS
LKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLA
DFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHV
AESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYERV
LETIQSMGKVVDTLYQKAKKLSASFLDH
BO04024.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpn6-PC | 422 | CG10149-PC | 1..422 | 1..422 | 2086 | 100 | Plus |
Rpn6-PB | 422 | CG10149-PB | 1..422 | 1..422 | 2086 | 100 | Plus |
Rpn6-PA | 439 | CG10149-PA | 18..439 | 1..422 | 2086 | 100 | Plus |
alien-PD | 444 | CG9556-PD | 41..410 | 15..385 | 233 | 22.3 | Plus |
alien-PE | 444 | CG9556-PE | 41..410 | 15..385 | 233 | 22.3 | Plus |