Clone BO04026 Report

Search the DGRC for BO04026

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:40
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptTsp96F-RA
Protein status:BO04026.pep: validated full length
Sequenced Size:838

Clone Sequence Records

BO04026.3prime Sequence

836 bp (835 high quality bases) assembled on 2005-12-01

> BO04026.3prime
ATGGTCTAGAAAGCTTGCGGCCTTGTAGTGCTGATTCCTCACCGCGCAGC
AGAGGCTCAGGGCGAAAGTCAGGGACAGCAGCTCCAGCAGAATGACAGCG
GCGGTGACGGCGAAAATGGTGACCCAGTTCTCGTAGATGATTTCAATCAG
CTTGTCCACGCAGCCCTGCTGATAAATGGCGTTGTTCAATGGGCCACCAA
ATTTCAGGCGTCTGGACAGCTCACACTCATTATCCTTTAGATTATCCTTG
CAGCAGGACTCGGGTATGTTATAGAAGACATTCATGGAAGACACGGCGAT
CTCCACAATATTTGTGCGATCCACATTATTAAACCGACTCGTGGCCCAAT
CTCCAGGTCCATCGGCGCCGCAGCATTTCAAATTCTTTTGCAGCGTATCA
AAGGTGACGGTGCGCGAACTCATCGTGGACTGGCCGTACTCCTCCTGGAC
TGACGACTTGACAGCCGCCCGCACGATGTCATCCAGCTTGTCTTTGTTGT
GGAAGGCCCATGCTCCGGCTGCAATTTGTGCCACCATCACGATGAGTATG
ACACAGAAGAACGAAACCAGCAGACATTGCGACTCACGACAGACTCCGCA
ACAGCCAAAGAATGCGCCCAATGTGATCAGTATGCCGATGGCGAGGAAAA
CATACAGGGCTATGTGATAATGATTGTAGTTCTGTGTCATCGACAGCATA
AATGTGGGATCCGTCAGCATCCAAACGGAGGTCACCACGATGGTCAGTCC
GATGAGCCAGAATAAAATGTTTATAAGGACCATCAGATATTTGACGCACG
AACAGCAGCCGTTGAGACCCATGTCGACTGATAACT

BO04026.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6120-PA 807 Tsp96F-RA 1..804 822..19 4020 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp96F-RC 3343 CG6120-RC 346..1150 823..19 4025 100 Minus
Tsp96F-RB 2709 CG6120-RB 346..1150 823..19 4025 100 Minus
Tsp96F-RA 2709 CG6120-RA 346..1150 823..19 4025 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25875658..25875874 165..381 1085 100 Plus
3R 32079331 3R 25876532..25876727 562..757 980 100 Plus
3R 32079331 3R 25875945..25876125 382..562 905 100 Plus
3R 32079331 3R 25875093..25875243 19..169 755 100 Plus
3R 32079331 3R 25881016..25881082 757..823 335 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:12:42 has no hits.

BO04026.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:52:49 Download gff for BO04026.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6120-PA 1..807 16..822 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:01 Download gff for BO04026.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6120-PA 1..807 16..822 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:24:58 Download gff for BO04026.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp96F-RA 338..1150 19..832 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:50:10 Download gff for BO04026.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp96F-RA 338..1150 19..832 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:50:10 Download gff for BO04026.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25875093..25875239 19..165 100 <- Plus
3R 25875659..25875874 166..381 100 <- Plus
3R 25875945..25876124 382..561 100 <- Plus
3R 25876532..25876726 562..756 100 <- Plus
3R 25881016..25881090 757..832 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:24:58 Download gff for BO04026.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21700815..21700961 19..165 100 <- Plus
arm_3R 21701381..21701596 166..381 100 <- Plus
arm_3R 21701667..21701846 382..561 100 <- Plus
arm_3R 21702254..21702448 562..756 100 <- Plus
arm_3R 21706738..21706812 757..832 96   Plus

BO04026.5prime Sequence

836 bp (804 high quality bases) assembled on 2005-12-01

> BO04026.5prime
GAAGTTATCAGTCGACATGGGTCTCAACGGCTGCTGTTCGTGCGTCAAAT
ATCTGATGGTCCTTATAAACATTTTATTCTGGCTCATCGGACTGACCATC
GTGGTGACCTCCGTTTGGATGCTGACGGATCCCACATTTATGCTGTCGAT
GACACAGAACTACAATCATTATCACATAGCCCTGTATGTTTTCCTCGCCA
TCGGCATACTGATCACATTGGGCGCATTCTTTGGCTGTTGCGGAGTCTGT
CGTGAGTCGCAATGTCTGCTGGTTTCGTTCTTCTGTGTCATACTCATCGT
GATGGTGGCACAAATTGCAGCCGGAGCATGGGCCTTCCACAACAAAGACA
AGCTGGATGACATCGTGCGGGCGGCTGTCAAGTCGTCAGTCCAGGAGGAG
TACGGCCAGTCCACGATGAGTTCGCGCACCGTCACCTTTGATACGCTGCA
AAAGAATTTGAAATGCTGCGGCGCCGATGGACCTGGAGATTGGGCCACGA
GTCGGTTTAATAATGTGGATCGCACAAATATTGTGGAGATCGCCGTGTCT
TCCATGAATGTCTTCTATAACATACCCGAGTCCTGCTGCAAGGATAATCT
AAAGGATAATGAGTGTGAGCTGTCCAGACGCCTGAAATTTGGTGGCCCAT
TGAACAACGCCATTTATCAGCAGGGCTGCGTGGACAAGCTGATTGAAATC
ATCTACGAGAACTGGGTCACCATTTTCGCCGTCACCGCCGCTGTCATTCT
GCTGGAGCTGCTGTCCCTGACTTTCGCCCTGAGCCTCTGCTGCGCGGTGA
GGAATCAGCACTACAAGGCCGCAAGCTTTCTAGACC

BO04026.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6120-PA 807 Tsp96F-RA 1..804 17..820 4020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp96F-RC 3343 CG6120-RC 346..1150 16..820 4025 100 Plus
Tsp96F-RB 2709 CG6120-RB 346..1150 16..820 4025 100 Plus
Tsp96F-RA 2709 CG6120-RA 346..1150 16..820 4025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25875658..25875874 674..458 1085 100 Minus
3R 32079331 3R 25876532..25876727 277..82 980 100 Minus
3R 32079331 3R 25875945..25876125 457..277 905 100 Minus
3R 32079331 3R 25875093..25875243 820..670 755 100 Minus
3R 32079331 3R 25881016..25881082 82..16 335 100 Minus
Blast to na_te.dros performed on 2015-02-11 02:21:24 has no hits.

BO04026.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:52:50 Download gff for BO04026.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6120-PA 1..807 17..823 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:03 Download gff for BO04026.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6120-PA 1..807 17..823 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:46:16 Download gff for BO04026.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp96F-RA 338..1150 7..820 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:47:04 Download gff for BO04026.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp96F-RA 338..1150 7..820 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:47:04 Download gff for BO04026.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25881016..25881090 7..82 96   Minus
3R 25875093..25875239 674..820 100 <- Minus
3R 25875659..25875874 458..673 100 <- Minus
3R 25875945..25876124 278..457 100 <- Minus
3R 25876532..25876726 83..277 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:46:16 Download gff for BO04026.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21700815..21700961 674..820 100 <- Minus
arm_3R 21701381..21701596 458..673 100 <- Minus
arm_3R 21701667..21701846 278..457 100 <- Minus
arm_3R 21702254..21702448 83..277 100 <- Minus
arm_3R 21706738..21706812 7..82 96   Minus

BO04026.complete Sequence

838 bp (838 high quality bases) assembled on 2005-09-08

GenBank Submission: FJ629603

> BO04026.complete
GAAGTTATCAGTCGACATGGGTCTCAACGGCTGCTGTTCGTGCGTCAAAT
ATCTGATGGTCCTTATAAACATTTTATTCTGGCTCATCGGACTGACCATC
GTGGTGACCTCCGTTTGGATGCTGACGGATCCCACATTTATGCTGTCGAT
GACACAGAACTACAATCATTATCACATAGCCCTGTATGTTTTCCTCGCCA
TCGGCATACTGATCACATTGGGCGCATTCTTTGGCTGTTGCGGAGTCTGT
CGTGAGTCGCAATGTCTGCTGGTTTCGTTCTTCTGTGTCATACTCATCGT
GATGGTGGCACAAATTGCAGCCGGAGCATGGGCCTTCCACAACAAAGACA
AGCTGGATGACATCGTGCGGGCGGCTGTCAAGTCGTCAGTCCAGGAGGAG
TACGGCCAGTCCACGATGAGTTCGCGCACCGTCACCTTTGATACGCTGCA
AAAGAATTTGAAATGCTGCGGCGCCGATGGACCTGGAGATTGGGCCACGA
GTCGGTTTAATAATGTGGATCGCACAAATATTGTGGAGATCGCCGTGTCT
TCCATGAATGTCTTCTATAACATACCCGAGTCCTGCTGCAAGGATAATCT
AAAGGATAATGAGTGTGAGCTGTCCAGACGCCTGAAATTTGGTGGCCCAT
TGAACAACGCCATTTATCAGCAGGGCTGCGTGGACAAGCTGATTGAAATC
ATCTACGAGAACTGGGTCACCATTTTCGCCGTCACCGCCGCTGTCATTCT
GCTGGAGCTGCTGTCCCTGACTTTCGCCCTGAGCCTCTGCTGCGCGGTGA
GGAATCAGCACTACAAGGCCGCAAGCTTTCTAGACCAT

BO04026.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp96F-RB 855 CG6120-PB 1..804 17..820 4020 100 Plus
Tsp96F-RC 807 CG6120-PC 1..804 17..820 4020 100 Plus
Tsp96F-RA 807 CG6120-PA 1..804 17..820 4020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp96F-RC 3343 CG6120-RC 346..1150 16..820 4025 100 Plus
Tsp96F-RB 2709 CG6120-RB 346..1150 16..820 4025 100 Plus
Tsp96F-RA 2709 CG6120-RA 346..1150 16..820 4025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25875658..25875874 674..458 1085 100 Minus
3R 32079331 3R 25876532..25876727 277..82 980 100 Minus
3R 32079331 3R 25875945..25876125 457..277 905 100 Minus
3R 32079331 3R 25875093..25875243 820..670 755 100 Minus
3R 32079331 3R 25881016..25881082 82..16 335 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:49:44 has no hits.

BO04026.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:59 Download gff for BO04026.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp96F-RA 1..807 17..823 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:59 Download gff for BO04026.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp96F-RA 351..1163 7..820 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:19 Download gff for BO04026.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp96F-RA 347..1150 17..822 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:59 Download gff for BO04026.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp96F-RA 351..1163 7..820 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:45 Download gff for BO04026.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp96F-RA 347..1150 17..822 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:45 Download gff for BO04026.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25875090..25875239 674..822 98 <- Minus
3R 25875659..25875874 458..673 100 <- Minus
3R 25875945..25876124 278..457 100 <- Minus
3R 25876532..25876726 83..277 100 <- Minus
3R 25881016..25881081 17..82 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:19 Download gff for BO04026.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21701381..21701596 458..673 100 <- Minus
arm_3R 21701667..21701846 278..457 100 <- Minus
arm_3R 21700812..21700961 674..822 98 <- Minus
arm_3R 21702254..21702448 83..277 100 <- Minus
arm_3R 21706738..21706803 17..82 100   Minus

BO04026.pep Sequence

Translation from 16 to 838

> BO04026.pep
MGLNGCCSCVKYLMVLINILFWLIGLTIVVTSVWMLTDPTFMLSMTQNYN
HYHIALYVFLAIGILITLGAFFGCCGVCRESQCLLVSFFCVILIVMVAQI
AAGAWAFHNKDKLDDIVRAAVKSSVQEEYGQSTMSSRTVTFDTLQKNLKC
CGADGPGDWATSRFNNVDRTNIVEIAVSSMNVFYNIPESCCKDNLKDNEC
ELSRRLKFGGPLNNAIYQQGCVDKLIEIIYENWVTIFAVTAAVILLELLS
LTFALSLCCAVRNQHYKAASFLDH

BO04026.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp96F-PC 268 CG6120-PC 1..268 1..268 1417 100 Plus
Tsp96F-PA 268 CG6120-PA 1..268 1..268 1417 100 Plus
Tsp96F-PB 284 CG6120-PB 1..268 1..268 1417 100 Plus
Tsp26A-PC 277 CG9093-PC 18..275 9..267 263 28.4 Plus
Tsp47F-PB 239 CG9033-PB 7..239 8..267 260 25.3 Plus