Clone Sequence Records
BO04026.3prime Sequence
836 bp (835 high quality bases) assembled on 2005-12-01
> BO04026.3prime
ATGGTCTAGAAAGCTTGCGGCCTTGTAGTGCTGATTCCTCACCGCGCAGC
AGAGGCTCAGGGCGAAAGTCAGGGACAGCAGCTCCAGCAGAATGACAGCG
GCGGTGACGGCGAAAATGGTGACCCAGTTCTCGTAGATGATTTCAATCAG
CTTGTCCACGCAGCCCTGCTGATAAATGGCGTTGTTCAATGGGCCACCAA
ATTTCAGGCGTCTGGACAGCTCACACTCATTATCCTTTAGATTATCCTTG
CAGCAGGACTCGGGTATGTTATAGAAGACATTCATGGAAGACACGGCGAT
CTCCACAATATTTGTGCGATCCACATTATTAAACCGACTCGTGGCCCAAT
CTCCAGGTCCATCGGCGCCGCAGCATTTCAAATTCTTTTGCAGCGTATCA
AAGGTGACGGTGCGCGAACTCATCGTGGACTGGCCGTACTCCTCCTGGAC
TGACGACTTGACAGCCGCCCGCACGATGTCATCCAGCTTGTCTTTGTTGT
GGAAGGCCCATGCTCCGGCTGCAATTTGTGCCACCATCACGATGAGTATG
ACACAGAAGAACGAAACCAGCAGACATTGCGACTCACGACAGACTCCGCA
ACAGCCAAAGAATGCGCCCAATGTGATCAGTATGCCGATGGCGAGGAAAA
CATACAGGGCTATGTGATAATGATTGTAGTTCTGTGTCATCGACAGCATA
AATGTGGGATCCGTCAGCATCCAAACGGAGGTCACCACGATGGTCAGTCC
GATGAGCCAGAATAAAATGTTTATAAGGACCATCAGATATTTGACGCACG
AACAGCAGCCGTTGAGACCCATGTCGACTGATAACT
BO04026.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6120-PA | 807 | Tsp96F-RA | 1..804 | 822..19 | 4020 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:12:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp96F-RC | 3343 | CG6120-RC | 346..1150 | 823..19 | 4025 | 100 | Minus |
Tsp96F-RB | 2709 | CG6120-RB | 346..1150 | 823..19 | 4025 | 100 | Minus |
Tsp96F-RA | 2709 | CG6120-RA | 346..1150 | 823..19 | 4025 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:12:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25875658..25875874 | 165..381 | 1085 | 100 | Plus |
3R | 32079331 | 3R | 25876532..25876727 | 562..757 | 980 | 100 | Plus |
3R | 32079331 | 3R | 25875945..25876125 | 382..562 | 905 | 100 | Plus |
3R | 32079331 | 3R | 25875093..25875243 | 19..169 | 755 | 100 | Plus |
3R | 32079331 | 3R | 25881016..25881082 | 757..823 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:12:42 has no hits.
BO04026.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:52:49 Download gff for
BO04026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6120-PA | 1..807 | 16..822 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:01 Download gff for
BO04026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6120-PA | 1..807 | 16..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:24:58 Download gff for
BO04026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp96F-RA | 338..1150 | 19..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:50:10 Download gff for
BO04026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp96F-RA | 338..1150 | 19..832 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:50:10 Download gff for
BO04026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25875093..25875239 | 19..165 | 100 | <- | Plus |
3R | 25875659..25875874 | 166..381 | 100 | <- | Plus |
3R | 25875945..25876124 | 382..561 | 100 | <- | Plus |
3R | 25876532..25876726 | 562..756 | 100 | <- | Plus |
3R | 25881016..25881090 | 757..832 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:24:58 Download gff for
BO04026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21700815..21700961 | 19..165 | 100 | <- | Plus |
arm_3R | 21701381..21701596 | 166..381 | 100 | <- | Plus |
arm_3R | 21701667..21701846 | 382..561 | 100 | <- | Plus |
arm_3R | 21702254..21702448 | 562..756 | 100 | <- | Plus |
arm_3R | 21706738..21706812 | 757..832 | 96 | | Plus |
BO04026.5prime Sequence
836 bp (804 high quality bases) assembled on 2005-12-01
> BO04026.5prime
GAAGTTATCAGTCGACATGGGTCTCAACGGCTGCTGTTCGTGCGTCAAAT
ATCTGATGGTCCTTATAAACATTTTATTCTGGCTCATCGGACTGACCATC
GTGGTGACCTCCGTTTGGATGCTGACGGATCCCACATTTATGCTGTCGAT
GACACAGAACTACAATCATTATCACATAGCCCTGTATGTTTTCCTCGCCA
TCGGCATACTGATCACATTGGGCGCATTCTTTGGCTGTTGCGGAGTCTGT
CGTGAGTCGCAATGTCTGCTGGTTTCGTTCTTCTGTGTCATACTCATCGT
GATGGTGGCACAAATTGCAGCCGGAGCATGGGCCTTCCACAACAAAGACA
AGCTGGATGACATCGTGCGGGCGGCTGTCAAGTCGTCAGTCCAGGAGGAG
TACGGCCAGTCCACGATGAGTTCGCGCACCGTCACCTTTGATACGCTGCA
AAAGAATTTGAAATGCTGCGGCGCCGATGGACCTGGAGATTGGGCCACGA
GTCGGTTTAATAATGTGGATCGCACAAATATTGTGGAGATCGCCGTGTCT
TCCATGAATGTCTTCTATAACATACCCGAGTCCTGCTGCAAGGATAATCT
AAAGGATAATGAGTGTGAGCTGTCCAGACGCCTGAAATTTGGTGGCCCAT
TGAACAACGCCATTTATCAGCAGGGCTGCGTGGACAAGCTGATTGAAATC
ATCTACGAGAACTGGGTCACCATTTTCGCCGTCACCGCCGCTGTCATTCT
GCTGGAGCTGCTGTCCCTGACTTTCGCCCTGAGCCTCTGCTGCGCGGTGA
GGAATCAGCACTACAAGGCCGCAAGCTTTCTAGACC
BO04026.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6120-PA | 807 | Tsp96F-RA | 1..804 | 17..820 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:21:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp96F-RC | 3343 | CG6120-RC | 346..1150 | 16..820 | 4025 | 100 | Plus |
Tsp96F-RB | 2709 | CG6120-RB | 346..1150 | 16..820 | 4025 | 100 | Plus |
Tsp96F-RA | 2709 | CG6120-RA | 346..1150 | 16..820 | 4025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:21:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25875658..25875874 | 674..458 | 1085 | 100 | Minus |
3R | 32079331 | 3R | 25876532..25876727 | 277..82 | 980 | 100 | Minus |
3R | 32079331 | 3R | 25875945..25876125 | 457..277 | 905 | 100 | Minus |
3R | 32079331 | 3R | 25875093..25875243 | 820..670 | 755 | 100 | Minus |
3R | 32079331 | 3R | 25881016..25881082 | 82..16 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:21:24 has no hits.
BO04026.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:52:50 Download gff for
BO04026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6120-PA | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:03 Download gff for
BO04026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6120-PA | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:46:16 Download gff for
BO04026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp96F-RA | 338..1150 | 7..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:47:04 Download gff for
BO04026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp96F-RA | 338..1150 | 7..820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:47:04 Download gff for
BO04026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25881016..25881090 | 7..82 | 96 | | Minus |
3R | 25875093..25875239 | 674..820 | 100 | <- | Minus |
3R | 25875659..25875874 | 458..673 | 100 | <- | Minus |
3R | 25875945..25876124 | 278..457 | 100 | <- | Minus |
3R | 25876532..25876726 | 83..277 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:46:16 Download gff for
BO04026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21700815..21700961 | 674..820 | 100 | <- | Minus |
arm_3R | 21701381..21701596 | 458..673 | 100 | <- | Minus |
arm_3R | 21701667..21701846 | 278..457 | 100 | <- | Minus |
arm_3R | 21702254..21702448 | 83..277 | 100 | <- | Minus |
arm_3R | 21706738..21706812 | 7..82 | 96 | | Minus |
BO04026.complete Sequence
838 bp (838 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629603
> BO04026.complete
GAAGTTATCAGTCGACATGGGTCTCAACGGCTGCTGTTCGTGCGTCAAAT
ATCTGATGGTCCTTATAAACATTTTATTCTGGCTCATCGGACTGACCATC
GTGGTGACCTCCGTTTGGATGCTGACGGATCCCACATTTATGCTGTCGAT
GACACAGAACTACAATCATTATCACATAGCCCTGTATGTTTTCCTCGCCA
TCGGCATACTGATCACATTGGGCGCATTCTTTGGCTGTTGCGGAGTCTGT
CGTGAGTCGCAATGTCTGCTGGTTTCGTTCTTCTGTGTCATACTCATCGT
GATGGTGGCACAAATTGCAGCCGGAGCATGGGCCTTCCACAACAAAGACA
AGCTGGATGACATCGTGCGGGCGGCTGTCAAGTCGTCAGTCCAGGAGGAG
TACGGCCAGTCCACGATGAGTTCGCGCACCGTCACCTTTGATACGCTGCA
AAAGAATTTGAAATGCTGCGGCGCCGATGGACCTGGAGATTGGGCCACGA
GTCGGTTTAATAATGTGGATCGCACAAATATTGTGGAGATCGCCGTGTCT
TCCATGAATGTCTTCTATAACATACCCGAGTCCTGCTGCAAGGATAATCT
AAAGGATAATGAGTGTGAGCTGTCCAGACGCCTGAAATTTGGTGGCCCAT
TGAACAACGCCATTTATCAGCAGGGCTGCGTGGACAAGCTGATTGAAATC
ATCTACGAGAACTGGGTCACCATTTTCGCCGTCACCGCCGCTGTCATTCT
GCTGGAGCTGCTGTCCCTGACTTTCGCCCTGAGCCTCTGCTGCGCGGTGA
GGAATCAGCACTACAAGGCCGCAAGCTTTCTAGACCAT
BO04026.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:49:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp96F-RB | 855 | CG6120-PB | 1..804 | 17..820 | 4020 | 100 | Plus |
Tsp96F-RC | 807 | CG6120-PC | 1..804 | 17..820 | 4020 | 100 | Plus |
Tsp96F-RA | 807 | CG6120-PA | 1..804 | 17..820 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:49:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp96F-RC | 3343 | CG6120-RC | 346..1150 | 16..820 | 4025 | 100 | Plus |
Tsp96F-RB | 2709 | CG6120-RB | 346..1150 | 16..820 | 4025 | 100 | Plus |
Tsp96F-RA | 2709 | CG6120-RA | 346..1150 | 16..820 | 4025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:49:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25875658..25875874 | 674..458 | 1085 | 100 | Minus |
3R | 32079331 | 3R | 25876532..25876727 | 277..82 | 980 | 100 | Minus |
3R | 32079331 | 3R | 25875945..25876125 | 457..277 | 905 | 100 | Minus |
3R | 32079331 | 3R | 25875093..25875243 | 820..670 | 755 | 100 | Minus |
3R | 32079331 | 3R | 25881016..25881082 | 82..16 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:49:44 has no hits.
BO04026.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:59 Download gff for
BO04026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp96F-RA | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:59 Download gff for
BO04026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp96F-RA | 351..1163 | 7..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:19 Download gff for
BO04026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp96F-RA | 347..1150 | 17..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:59 Download gff for
BO04026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp96F-RA | 351..1163 | 7..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:45 Download gff for
BO04026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp96F-RA | 347..1150 | 17..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:45 Download gff for
BO04026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25875090..25875239 | 674..822 | 98 | <- | Minus |
3R | 25875659..25875874 | 458..673 | 100 | <- | Minus |
3R | 25875945..25876124 | 278..457 | 100 | <- | Minus |
3R | 25876532..25876726 | 83..277 | 100 | <- | Minus |
3R | 25881016..25881081 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:19 Download gff for
BO04026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21701381..21701596 | 458..673 | 100 | <- | Minus |
arm_3R | 21701667..21701846 | 278..457 | 100 | <- | Minus |
arm_3R | 21700812..21700961 | 674..822 | 98 | <- | Minus |
arm_3R | 21702254..21702448 | 83..277 | 100 | <- | Minus |
arm_3R | 21706738..21706803 | 17..82 | 100 | | Minus |
BO04026.pep Sequence
Translation from 16 to 838
> BO04026.pep
MGLNGCCSCVKYLMVLINILFWLIGLTIVVTSVWMLTDPTFMLSMTQNYN
HYHIALYVFLAIGILITLGAFFGCCGVCRESQCLLVSFFCVILIVMVAQI
AAGAWAFHNKDKLDDIVRAAVKSSVQEEYGQSTMSSRTVTFDTLQKNLKC
CGADGPGDWATSRFNNVDRTNIVEIAVSSMNVFYNIPESCCKDNLKDNEC
ELSRRLKFGGPLNNAIYQQGCVDKLIEIIYENWVTIFAVTAAVILLELLS
LTFALSLCCAVRNQHYKAASFLDH
BO04026.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp96F-PC | 268 | CG6120-PC | 1..268 | 1..268 | 1417 | 100 | Plus |
Tsp96F-PA | 268 | CG6120-PA | 1..268 | 1..268 | 1417 | 100 | Plus |
Tsp96F-PB | 284 | CG6120-PB | 1..268 | 1..268 | 1417 | 100 | Plus |
Tsp26A-PC | 277 | CG9093-PC | 18..275 | 9..267 | 263 | 28.4 | Plus |
Tsp47F-PB | 239 | CG9033-PB | 7..239 | 8..267 | 260 | 25.3 | Plus |