Clone Sequence Records
BO04029.5prime Sequence
795 bp (784 high quality bases) assembled on 2005-12-01
> BO04029.5prime
GAAGTTATCAGTCGACATGTCGCATCACTACGTGGTGACGGCGCAAAAGC
CGACGGCCGTTGTTGCCTGCCTAACAGGCAACTTCACCTCGCCCACGGAT
CTCAATTTGATCATTGCCCGGAACAATCAGGTGGAAATCGATCTGGTCAC
GCCGGAGGGACTGCGCCCCCTAAAAGAGATCAACATAAATGGCACCATTG
CCGTGATGCGCCACTTCCGACCGCCCGACAGCAACAAGGATTTGCTCTTC
ATACTGACGCGTCGTTACAACGTCATGATCCTCGAGGCCCGTATGGTCAA
CGACGTCATCACGGTGGTGACCAAGGCCAATGGTAATGTTTCCGACTCGG
TGGGCATCCCCTCCGAAGGAGGAGTTATTGCGGCCATCGATCCCAAGGCT
AGGGTCATCGGAATGTGCCTTTACCAGGGGCTGTTCACCATCATTCCGAT
GGACAAGGATGCTAGCGAGCTGAAAGCCACAAATCTTAGAATGGATGAGC
TAAACGTGTACGATGTTGAGTTTCTGCACGGCTGCTTGAATCCCACAGTT
ATCGTGATCCACAAGGACAGCGATGGCCGGCACGTAAAGTCGCACGAGAT
TAATCTGCGGGATAAGGAGTTTATGAAAATCGCATGGAAGCAGGACAACG
TGGAAACAGAGGCCACAATGCTGATCCCGGTGCCGTCGCCCATCGGTGGT
GTTATCGTCATTGGTCGGGAATCGATTGTATACCATGACGGAAGCAACTA
TCACGCTGTGGCGCCGCTCACTTTTCGCCAAAGCACCATCAACTG
BO04029.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7769-PA | 3423 | DDB1-RA | 1..779 | 17..795 | 3895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:08:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pic-RA | 3881 | CG7769-RA | 164..943 | 16..795 | 3900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:08:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13052620..13053034 | 75..489 | 2075 | 100 | Plus |
| 3R | 32079331 | 3R | 13053235..13053542 | 488..795 | 1540 | 100 | Plus |
| 3R | 32079331 | 3R | 13052408..13052470 | 16..78 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:08:36 has no hits.
BO04029.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:52:52 Download gff for
BO04029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DDB1-PA | 1..779 | 17..795 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:05 Download gff for
BO04029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7769-PA | 1..779 | 17..795 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:00:34 Download gff for
BO04029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pic-RA | 160..943 | 9..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:44:20 Download gff for
BO04029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pic-RA | 160..943 | 9..795 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:44:20 Download gff for
BO04029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13052404..13052469 | 9..77 | 95 | -> | Plus |
| 3R | 13052623..13053034 | 78..489 | 100 | -> | Plus |
| 3R | 13053237..13053542 | 490..795 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:00:34 Download gff for
BO04029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8878126..8878191 | 9..77 | 95 | -> | Plus |
| arm_3R | 8878345..8878756 | 78..489 | 100 | -> | Plus |
| arm_3R | 8878959..8879264 | 490..795 | 100 | | Plus |
BO04029.complete Sequence
3454 bp assembled on 2008-08-14
GenBank Submission: FJ629604
> BO04029.complete
GAAGTTATCAGTCGACATGTCGCATCACTACGTGGTGACGGCGCAAAAGC
CGACGGCCGTTGTTGCCTGCCTAACAGGCAACTTCACCTCGCCCACGGAT
CTCAATTTGATCATTGCCCGGAACAATCAGGTGGAAATCGATCTGGTCAC
GCCGGAGGGACTGCGCCCCCTAAAAGAGATCAACATAAATGGCACCATTG
CCGTGATGCGCCACTTCCGACCGCCCGACAGCAACAAGGATTTGCTCTTC
ATACTGACGCGTCGTTACAACGTCATGATCCTCGAGGCCCGTATGGTCAA
CGACGTCATCACGGTGGTGACCAAGGCCAATGGTAATGTTTCCGACTCGG
TGGGCATCCCCTCCGAAGGAGGAGTTATTGCGGCCATCGATCCCAAGGCT
AGGGTCATCGGAATGTGCCTTTACCAGGGGCTGTTCACCATCATTCCGAT
GGACAAGGATGCTAGCGAGCTGAAAGCCACAAATCTTAGAATGGATGAGC
TAAACGTGTACGATGTTGAGTTTCTGCACGGCTGCTTGAATCCCACAGTT
ATCGTGATCCACAAGGACAGCGATGGCCGGCACGTAAAGTCGCACGAGAT
TAATCTGCGGGATAAGGAGTTTATGAAAATCGCATGGAAGCAGGACAACG
TGGAAACAGAGGCCACAATGCTGATCCCGGTGCCGTCGCCCATCGGTGGT
GTTATCGTCATTGGTCGGGAATCGATTGTATACCATGACGGAAGCAACTA
TCACGCTGTGGCGCCGCTCACTTTTCGCCAAAGCACCATCAACTGTTACG
CCCGTGTGAGTAGCAATGGATTGCGCTATCTGCTGGGTAACATGGATGGT
CAGCTGTATATGCTGTTCCTTGGGACCGCCGAAACTAGCAAGGGAGTGAC
TGTGAAGGACATAAAAGTGGAGCAACTAGGCGAGATCTCTATACCAGAGT
GCATTACATACCTAGACAATGGTTTCCTTTACATTGGAGCACGTCATGGA
GACTCGCAGTTGGTGCGCTTGAATTCGGAGGCCATCGACGGGTCATATGT
CGTGCCTGTAGAGAATTTCACCAATCTAGCTCCCATTCTGGACATTGCTG
TGGTCGATCTGGATCGCCAGGGACAGGGCCAAATCATCACATGCTCGGGA
AGCTTTAAGGATGGATCTCTACGCATAATTCGCATAGGCATCGGCATTCA
GGAGCATGCCTGCATCGATCTCCCCGGCATTAAGGGCATGTGGTCTCTAA
AGGTGGGAGTCGATGAGAGTCCGTATGAGAACACTTTGGTGCTGGCTTTT
GTGGGACACACAAGGATTCTCACGCTTTCTGGTGAAGAGGTGGAAGAGAC
CGAGATTCCCGGATTTGCCAGCGATCTGCAGACTTTCCTTTGCTCAAATG
TGGATTATGATCAGTTGATTCAAGTTACTTCGGATAGCGTTCGCTTGGTT
AGCAGTGCCACTAAAGCCCTTGTGGCCGAATGGCGTCCTACTGGCGATCG
TACCATCGGTGTTGTGTCCTGCAACACTACCCAGATCTTGGTTGCCTCCG
CATGCGACATATTCTACATAGTTATTGAAGATGGAAGCCTCCGCGAGCAG
TCCCGCCGAACATTGGCATATGAGGTAGCCTGTTTGGACATCACTCCCTT
GGATGAGACTCAAAAAAAGTCGGATTTGGTGGCGGTGGGCCTATGGACCG
ATATATCTGCTGTTATCCTGTCGCTGCCTGATCTTGAGACCATCTACACC
GAAAAACTAAGCGGAGAAATAATTCCCCGCTCCATTCTGATGACCACATT
TGAGGGAATCCATTATCTGCTTTGCGCTTTGGGCGACGGTTCCATGTATT
ACTTTATCATGGACCAAACCACTGGGCAACTGACGGACAAGAAGAAAGTC
ACTCTCGGTACACAACCAACCACGCTCCGCACCTTCCGATCCTTATCTAC
CACTAATGTGTTTGCCTGCTCTGATCGTCCCACGGTGATTTACTCGTCGA
ACCACAAGTTGGTGTTCTCTAACGTAAATCTGAAGGAGGTCAACCACATG
TGCTCCTTAAATGCTCAGGCGTATCCAGATAGTTTGGCGCTGGCGAACAA
GAACGCTGTTATTTTGGGCACTATTGATGAGATTCAGAAGCTGCATATTC
GAACAGTGCCTCTTGGGGAAGGACCACGCAGAATTGCTTACCAAGAGTCG
TCGCAGACTTTTGCTGTGTCCACCCTGCGTATTGATGTCCATGGAAGAGG
CGGAGCTAAACCACTTCGCAATAGTGCCTCTACACAGGCCCAAAACATAA
CGTGTAGCTCGAATTTCCTACCCAAACCGGGTGGTGGTAATTCCACGGCT
GCAAATGCGGAAGTTGGTCAAGAGATCGATGTACACAATCTACTGGTCAT
CGATCAAAACACGTTCGAGGTTCTGCACGCCCACCAATTCGTTGCACCCG
AAACTATATCCTCTCTAATGTCCGCCAAACTGGGCGATGATCCCAACACT
TACTATGTGGTGGCCACATCACTTGTAATTCCAGAAGAACCGGAGCCGAA
GGTTGGAAGGATTATCATCTTCCATTATCACGAGAACAAGCTTACACAAG
TGGCCGAGACCAAGGTGGATGGAACTTGCTATGCCCTGGTTGAGTTCAAT
GGCAAGGTCCTGGCAGGAATCGGTAGTTTTGTCCGTCTATACGAGTGGAC
CAATGAGAAGGAGTTGCGCATGGAGTGCAACATTCAAAATATGATTGCTG
CTTTGTTTCTGAAGGCCAAGGGCGATTTTATATTGGTTGGAGATCTGATG
CGCTCCATCACGCTGCTGCAGCACAAGCAGATGGAGGGAATCTTTGTCGA
GATCGCGCGCGACTGCGAACCCAAGTGGATGCGAGCGGTCGAGATTCTTG
ACGACGATACGTTCCTAGGATCCGAGACAAATGGAAATCTGTTCGTGTGC
CAGAAGGACAGTGCTGCTACCACCGATGAGGAGCGTCAGTTGCTACCGGA
ATTGGCGCGTTTTCATTTGGGCGATACGGTGAACGTTTTCCGTCACGGAT
CTCTGGTGATGCAGAACGTTGGTGAGCGAACTACGCCGATCAATGGATGT
GTTCTGTACGGAACATGCAACGGAGCCATTGGCATTGTAACCCAGATACC
GCAGGACTTCTACGACTTCCTGCACGGCCTGGAGGAGCGGCTGAAGAAAA
TAATCAAGTCGGTGGGCAAGATTGAGCACACGTACTACCGCAATTTCCAA
ATCAACAGCAAAGTTGAACCCAGCGAGGGATTCATCGATGGAGATCTAAT
TGAGAGCTTTTTGGACTTGAGTCGCGACAAGATGCGCGATGCCGTTCAGG
GATTGGAGTTGACACTGAATGGCGAACGAAAGAGTGCGGATGTGGAGGAT
GTCATAAAGATCGTCGAGGACCTCACGCGCATGCATGCAAGCTTTCTAGA
CCAT
BO04029.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:37:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pic-RA | 3423 | CG7769-PA | 1..3420 | 17..3436 | 17100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:37:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pic-RA | 3881 | CG7769-RA | 164..3584 | 16..3436 | 17105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:37:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13054639..13055835 | 1765..2961 | 5985 | 100 | Plus |
| 3R | 32079331 | 3R | 13053235..13054165 | 488..1418 | 4640 | 99.9 | Plus |
| 3R | 32079331 | 3R | 13052620..13053034 | 75..489 | 2075 | 100 | Plus |
| 3R | 32079331 | 3R | 13055889..13056292 | 2959..3362 | 2005 | 99.8 | Plus |
| 3R | 32079331 | 3R | 13054222..13054577 | 1411..1766 | 1780 | 100 | Plus |
| 3R | 32079331 | 3R | 13056349..13056428 | 3357..3436 | 400 | 100 | Plus |
| 3R | 32079331 | 3R | 13052408..13052470 | 16..78 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:37:15 has no hits.
BO04029.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:42 Download gff for
BO04029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DDB1-RA | 149..3573 | 9..3436 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:41 Download gff for
BO04029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pic-RA | 165..3584 | 17..3438 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:02 Download gff for
BO04029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DDB1-RA | 154..3573 | 17..3438 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:06 Download gff for
BO04029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pic-RA | 165..3584 | 17..3438 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:06 Download gff for
BO04029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13055892..13056288 | 2962..3358 | 100 | -> | Plus |
| 3R | 13056351..13056428 | 3359..3438 | 97 | | Plus |
| 3R | 13052409..13052469 | 17..77 | 100 | -> | Plus |
| 3R | 13052623..13053034 | 78..489 | 100 | -> | Plus |
| 3R | 13053237..13054161 | 490..1414 | 100 | -> | Plus |
| 3R | 13054226..13054577 | 1415..1766 | 100 | -> | Plus |
| 3R | 13054641..13055835 | 1767..2961 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:41 Download gff for
BO04029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8878131..8878191 | 17..77 | 100 | -> | Plus |
| arm_3R | 8878345..8878756 | 78..489 | 100 | -> | Plus |
| arm_3R | 8878959..8879883 | 490..1414 | 100 | -> | Plus |
| arm_3R | 8879948..8880299 | 1415..1766 | 100 | -> | Plus |
| arm_3R | 8880363..8881557 | 1767..2961 | 100 | -> | Plus |
| arm_3R | 8881614..8882010 | 2962..3358 | 100 | -> | Plus |
| arm_3R | 8882073..8882150 | 3359..3438 | 97 | | Plus |
BO04029.pep Sequence
Translation from 16 to 3454
> BO04029.pep
MSHHYVVTAQKPTAVVACLTGNFTSPTDLNLIIARNNQVEIDLVTPEGLR
PLKEININGTIAVMRHFRPPDSNKDLLFILTRRYNVMILEARMVNDVITV
VTKANGNVSDSVGIPSEGGVIAAIDPKARVIGMCLYQGLFTIIPMDKDAS
ELKATNLRMDELNVYDVEFLHGCLNPTVIVIHKDSDGRHVKSHEINLRDK
EFMKIAWKQDNVETEATMLIPVPSPIGGVIVIGRESIVYHDGSNYHAVAP
LTFRQSTINCYARVSSNGLRYLLGNMDGQLYMLFLGTAETSKGVTVKDIK
VEQLGEISIPECITYLDNGFLYIGARHGDSQLVRLNSEAIDGSYVVPVEN
FTNLAPILDIAVVDLDRQGQGQIITCSGSFKDGSLRIIRIGIGIQEHACI
DLPGIKGMWSLKVGVDESPYENTLVLAFVGHTRILTLSGEEVEETEIPGF
ASDLQTFLCSNVDYDQLIQVTSDSVRLVSSATKALVAEWRPTGDRTIGVV
SCNTTQILVASACDIFYIVIEDGSLREQSRRTLAYEVACLDITPLDETQK
KSDLVAVGLWTDISAVILSLPDLETIYTEKLSGEIIPRSILMTTFEGIHY
LLCALGDGSMYYFIMDQTTGQLTDKKKVTLGTQPTTLRTFRSLSTTNVFA
CSDRPTVIYSSNHKLVFSNVNLKEVNHMCSLNAQAYPDSLALANKNAVIL
GTIDEIQKLHIRTVPLGEGPRRIAYQESSQTFAVSTLRIDVHGRGGAKPL
RNSASTQAQNITCSSNFLPKPGGGNSTAANAEVGQEIDVHNLLVIDQNTF
EVLHAHQFVAPETISSLMSAKLGDDPNTYYVVATSLVIPEEPEPKVGRII
IFHYHENKLTQVAETKVDGTCYALVEFNGKVLAGIGSFVRLYEWTNEKEL
RMECNIQNMIAALFLKAKGDFILVGDLMRSITLLQHKQMEGIFVEIARDC
EPKWMRAVEILDDDTFLGSETNGNLFVCQKDSAATTDEERQLLPELARFH
LGDTVNVFRHGSLVMQNVGERTTPINGCVLYGTCNGAIGIVTQIPQDFYD
FLHGLEERLKKIIKSVGKIEHTYYRNFQINSKVEPSEGFIDGDLIESFLD
LSRDKMRDAVQGLELTLNGERKSADVEDVIKIVEDLTRMHASFLDH
BO04029.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:15:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pic-PA | 1140 | CG7769-PA | 1..1140 | 1..1140 | 5858 | 100 | Plus |
| CG13900-PA | 1227 | CG13900-PA | 4..1226 | 5..1141 | 529 | 20.8 | Plus |
