Clone Sequence Records
BO04030.3prime Sequence
834 bp (742 high quality bases) assembled on 2005-12-01
> BO04030.3prime
ATGGTCTAGAAAGCTTGCATCATCGAAGCTAGACGATAGCAAAAAATTAG
CTGCTTGTTCCTCGTTCTTTTCACAAGCGAAGTACGCTTGCAGTACAAGG
GCCTCTGGGAATCCAAGAGCTTTTAGCCGTTCTATTGCGTCCTTATCTTG
GCGATTTAAACGAATGGTTGATACTCCTAAAGGTTGTTCCAAGTCTTCGT
TATCCGCTGCGCTACCGCTTTGATGTGCTGCACTTGTACCCGCGGCTGAT
CTTTGTGCTGAAGTAGCTACTTCTAAATCTGGAGAAAAGAGGTCAACATT
GTCCAAAGTTGAAGGAATCCGCGCATTCGAAACGGGAGGAACGGTGGCGC
CTGACTCCGATTCGCGGTCAATCGGTTGATTAAGCATATTGAGAAACGCA
TCTTGGTTCTCCGAAATAAGTTGTAAAAGGGCTGGGTTTGTCTGACCAAT
CTGCTGCAATACTGCATGCAAAAGATGAGGGTTTTGATAAATTAAAGATC
GCATTTGAAGAAACTGTGGCTGGCTACGTAAAAATTCAAAGGGGTCTGAA
TTTGATTCTGTTGAACGCTCGGCAGAGGTTGCCGACGCAGGTTGCGGTCC
GGAGGGGATTAGACTAGGATTCGTTGATTCATTCAGCCTATTGTAAAAAG
TACCTTCCTCTGCAGGTATGCCATTAATGAGATATTCAACGGCTCTTTCC
GGGTTGTTATAACTAGCAGCCATCGCACGTTCAACCTGCTCTCTTGGGTA
ACCCATTTCCACCATTGATAGGACTGTTTGGTTGTATTCGTCACCCATAA
GCAAATTAGATTCAGCGCGCGATTGTAANGAAGC
BO04030.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1836-PB | 1032 | Rad23-RB | 214..1029 | 834..19 | 4061 | 99.8 | Minus |
CG1836-PA | 1245 | Rad23-RA | 427..1242 | 834..19 | 4061 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:08:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rad23-RC | 2009 | CG1836-RC | 558..1373 | 834..19 | 4069 | 99.9 | Minus |
Rad23-RA | 1489 | CG1836-RA | 558..1373 | 834..19 | 4069 | 99.9 | Minus |
Rad23-RB | 1507 | CG1836-RB | 576..1391 | 834..19 | 4069 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:08:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 309692..310017 | 452..127 | 1630 | 100 | Minus |
4 | 1348131 | 4 | 308791..309079 | 834..546 | 1434 | 99.7 | Minus |
4 | 1348131 | 4 | 310078..310186 | 127..19 | 545 | 100 | Minus |
4 | 1348131 | 4 | 309534..309633 | 550..451 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:08:47 has no hits.
BO04030.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:52:53 Download gff for
BO04030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad23-PA | 427..1245 | 18..834 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:06 Download gff for
BO04030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1836-PA | 427..1245 | 18..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:00:37 Download gff for
BO04030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad23-RB | 576..1391 | 19..834 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:44:29 Download gff for
BO04030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad23-RB | 576..1391 | 19..834 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:44:29 Download gff for
BO04030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 308791..309079 | 546..834 | 99 | -> | Minus |
4 | 309539..309633 | 451..545 | 100 | -> | Minus |
4 | 309694..310017 | 127..450 | 100 | -> | Minus |
4 | 310079..310186 | 19..126 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:00:37 Download gff for
BO04030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 329417..329705 | 546..834 | 99 | -> | Minus |
arm_4 | 330165..330259 | 451..545 | 100 | -> | Minus |
arm_4 | 330320..330643 | 127..450 | 100 | -> | Minus |
arm_4 | 330705..330812 | 19..126 | 100 | | Minus |
BO04030.5prime Sequence
894 bp (752 high quality bases) assembled on 2005-12-01
> BO04030.5prime
GAAGTTATCAGTCGACATGATTATTACAATTAAAAATCTTCAACAGCAAA
CTTTTACTATTGAGTTTGCCCCGGAAAAAACGGTTTTGGAACTGAAGAAG
AAAATATTCGAGGAGCGCGGTCCAGAGTACGTCGCCGAAAAACAAAAACT
GATCTACGCTGGCGTCATATTGACGGATGACCGCACCGTTGGTTCATACA
ACGTTGATGAAAAAAAGTTCATTGTGGTAATGTTGACACGCGATTCGTCT
AGTTCAAATCGTAATCAACTTAGTGTAAAAGAAAGTAATAAATTGACTAG
CACCGACGATTCAAAGCAATCTATGCCTTGCGAAGAAGCCAACCATACCA
ATTCGCCTAGTTCCACAAATACAGAAGATTCAGTTTTATCACGTGAAACC
AGACCTTTATCTAGTGACGAATTGATTGGCGAGTTGGCCCAGGCTTCCTT
ACAATCGCGCGCTGAATCTAATTTGCTTATGGGTGACGAATACAACCAAA
CAGTCCTATCAATGGTGGAAATGGGTTACCCAAGAGAGCAGGTTGAACGT
GCGATGGCTGCTAGTTATAACAACCCGGAAAGAGCCGTTGAATATCTCAT
TAATGGCATACCTGCAGAGGAAGGTACTTTTTACAATAGGCTGAATGAAT
CAACGAATCCTAGTCTAATCCCCTCCGGACCGCAACCTGCGTCGGCAACC
TCTGCCGAGCGTTCAACAGAATCAAATTCAGACCCCTTTGAATTTTTACG
TAGCCAGCCACAGTTTCTTCAAATGCGATCTTTAATTTATCAAAACCCTC
ATCTTTTGCATGCAGTATTGCAGCAGATTGGTCAGACAAACCCAGCCCTT
TTACAACTTATTTCGGAGAACCAAGATGCGTTTCTCAATATGCT
BO04030.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1836-PA | 1245 | Rad23-RA | 1..878 | 17..894 | 4390 | 100 | Plus |
CG1836-PB | 1032 | Rad23-RB | 1..665 | 230..894 | 3325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:08:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rad23-RC | 2009 | CG1836-RC | 132..1009 | 17..894 | 4390 | 100 | Plus |
Rad23-RA | 1489 | CG1836-RA | 132..1009 | 17..894 | 4390 | 100 | Plus |
Rad23-RB | 1507 | CG1836-RB | 132..1027 | 17..894 | 4200 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:08:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 308426..309079 | 78..731 | 3255 | 99.8 | Plus |
4 | 1348131 | 4 | 309534..309633 | 727..826 | 500 | 100 | Plus |
4 | 1348131 | 4 | 309692..309761 | 825..894 | 350 | 100 | Plus |
4 | 1348131 | 4 | 308224..308291 | 17..84 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:08:52 has no hits.
BO04030.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:52:54 Download gff for
BO04030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad23-PA | 1..878 | 17..894 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:08 Download gff for
BO04030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1836-PA | 1..878 | 17..894 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:00:38 Download gff for
BO04030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad23-RA | 126..1009 | 9..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:44:34 Download gff for
BO04030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad23-RA | 126..1009 | 9..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:44:34 Download gff for
BO04030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 308218..308289 | 9..82 | 94 | -> | Plus |
4 | 308431..309079 | 83..731 | 100 | -> | Plus |
4 | 309539..309633 | 732..826 | 100 | -> | Plus |
4 | 309694..309761 | 827..894 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:00:38 Download gff for
BO04030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 328844..328915 | 9..82 | 94 | -> | Plus |
arm_4 | 329057..329705 | 83..731 | 100 | -> | Plus |
arm_4 | 330165..330259 | 732..826 | 100 | -> | Plus |
arm_4 | 330320..330387 | 827..894 | 100 | | Plus |
BO04030.complete Sequence
1276 bp (1276 high quality bases) assembled on 2005-09-08
GenBank Submission: FJ629605
> BO04030.complete
GAAGTTATCAGTCGACATGATTATTACAATTAAAAATCTTCAACAGCAAA
CTTTTACTATTGAGTTTGCCCCGGAAAAAACGGTTTTGGAACTGAAGAAG
AAAATATTCGAGGAGCGCGGTCCAGAGTACGTCGCCGAAAAACAAAAACT
GATCTACGCTGGCGTCATATTGACGGATGACCGCACCGTTGGTTCATACA
ACGTTGATGAAAAAAAGTTCATTGTGGTAATGTTGACACGCGATTCGTCT
AGTTCAAATCGTAATCAACTTAGTGTAAAAGAAAGTAATAAATTGACTAG
CACCGACGATTCAAAGCAATCTATGCCTTGCGAAGAAGCCAACCATACCA
ATTCGCCTAGTTCCACAAATACAGAAGATTCAGTTTTATCACGTGAAACC
AGACCTTTATCTAGTGACGAATTGATTGGCGAGTTGGCCCAGGCTTCCTT
ACAATCGCGCGCTGAATCTAATTTGCTTATGGGTGACGAATACAACCAAA
CAGTCCTATCAATGGTGGAAATGGGTTACCCAAGAGAGCAGGTTGAACGT
GCGATGGCTGCTAGTTATAACAACCCGGAAAGAGCCGTTGAATATCTCAT
TAATGGCATACCTGCAGAGGAAGGTACTTTTTACAATAGGCTGAATGAAT
CAACGAATCCTAGTCTAATCCCCTCCGGACCGCAACCTGCGTCGGCAACC
TCTGCCGAGCGTTCAACAGAATCAAATTCAGACCCCTTTGAATTTTTACG
TAGCCAGCCACAGTTTCTTCAAATGCGATCTTTAATTTATCAAAACCCTC
ATCTTTTGCATGCAGTATTGCAGCAGATTGGTCAGACAAACCCAGCCCTT
TTACAACTTATTTCGGAGAACCAAGATGCGTTTCTCAATATGCTTAATCA
ACCGATTGACCGCGAATCGGAGTCAGGCGCCACCGTTCCTCCCGTTTCGA
ATGCGCGGATTCCTTCAACTTTGGACAATGTTGACCTCTTTTCTCCAGAT
TTAGAAGTAGCTACTTCAGCACAAAGATCAGCCGCGGGTACAAGTGCAGC
ACATCAAAGCGGTAGCGCAGCGGATAACGAAGACTTGGAACAACCTTTAG
GAGTATCAACCATTCGTTTAAATCGCCAAGATAAGGACGCAATAGAACGG
CTAAAAGCTCTTGGATTCCCAGAGGCCCTTGTACTGCAAGCGTACTTCGC
TTGTGAAAAGAACGAGGAACAAGCAGCTAATTTTTTGCTATCGTCTAGCT
TCGATGATGCAAGCTTTCTAGACCAT
BO04030.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:54:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rad23-RC | 1245 | CG1836-PC | 1..1242 | 17..1258 | 6210 | 100 | Plus |
Rad23-RA | 1245 | CG1836-PA | 1..1242 | 17..1258 | 6210 | 100 | Plus |
Rad23-RB | 1032 | CG1836-PB | 1..1029 | 230..1258 | 5145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:54:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rad23-RC | 2009 | CG1836-RC | 132..1373 | 17..1258 | 6210 | 100 | Plus |
Rad23-RA | 1489 | CG1836-RA | 132..1373 | 17..1258 | 6210 | 100 | Plus |
Rad23-RB | 1507 | CG1836-RB | 132..1391 | 17..1258 | 5995 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:54:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 308426..309079 | 78..731 | 3255 | 99.8 | Plus |
4 | 1348131 | 4 | 309692..310017 | 825..1150 | 1630 | 100 | Plus |
4 | 1348131 | 4 | 310078..310186 | 1150..1258 | 545 | 100 | Plus |
4 | 1348131 | 4 | 309534..309633 | 727..826 | 500 | 100 | Plus |
4 | 1348131 | 4 | 308224..308291 | 17..84 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:54:56 has no hits.
BO04030.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:42:43 Download gff for
BO04030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad23-RA | 1..1245 | 17..1259 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:12:42 Download gff for
BO04030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad23-RA | 112..1359 | 9..1258 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:32 Download gff for
BO04030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad23-RA | 132..1373 | 17..1260 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:42:43 Download gff for
BO04030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad23-RA | 112..1359 | 9..1258 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:58 Download gff for
BO04030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rad23-RA | 132..1373 | 17..1260 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:58 Download gff for
BO04030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 308224..308289 | 17..82 | 100 | -> | Plus |
4 | 308431..309079 | 83..731 | 100 | -> | Plus |
4 | 309539..309633 | 732..826 | 100 | -> | Plus |
4 | 309694..310017 | 827..1150 | 100 | -> | Plus |
4 | 310079..310186 | 1151..1260 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:32 Download gff for
BO04030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 328850..328915 | 17..82 | 100 | -> | Plus |
arm_4 | 329057..329705 | 83..731 | 100 | -> | Plus |
arm_4 | 330165..330259 | 732..826 | 100 | -> | Plus |
arm_4 | 330320..330643 | 827..1150 | 100 | -> | Plus |
arm_4 | 330705..330812 | 1151..1260 | 98 | | Plus |
BO04030.pep Sequence
Translation from 16 to 1276
> BO04030.pep
MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPEYVAEKQKLIYAGV
ILTDDRTVGSYNVDEKKFIVVMLTRDSSSSNRNQLSVKESNKLTSTDDSK
QSMPCEEANHTNSPSSTNTEDSVLSRETRPLSSDELIGELAQASLQSRAE
SNLLMGDEYNQTVLSMVEMGYPREQVERAMAASYNNPERAVEYLINGIPA
EEGTFYNRLNESTNPSLIPSGPQPASATSAERSTESNSDPFEFLRSQPQF
LQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIDRE
SESGATVPPVSNARIPSTLDNVDLFSPDLEVATSAQRSAAGTSAAHQSGS
AADNEDLEQPLGVSTIRLNRQDKDAIERLKALGFPEALVLQAYFACEKNE
EQAANFLLSSSFDDASFLDH
BO04030.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:47:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rad23-PC | 414 | CG1836-PC | 1..414 | 1..414 | 2071 | 100 | Plus |
Rad23-PA | 414 | CG1836-PA | 1..414 | 1..414 | 2071 | 100 | Plus |
Rad23-PB | 343 | CG1836-PB | 1..343 | 72..414 | 1718 | 100 | Plus |
CG10694-PA | 290 | CG10694-PA | 1..288 | 1..414 | 293 | 24.9 | Plus |