Clone Sequence Records
BO04031.3prime Sequence
746 bp (745 high quality bases) assembled on 2005-12-01
> BO04031.3prime
ATGGTCTAGAAAGCTTGCGAACATCTTCTTCCTGACCGCCGTATACCGCT
CCATGTAGACATCGTAGCCATCGAGATCGGTGAACTGTTTCGAGTTGAAC
AGATTGCCGTCGACGGCCAGGTTGCAGATTTTCGAGTCCTTGAGGATCTT
GGGTGTAAAGGCCGCTGCCTGAAGGCAGTTCTCCTCGAGCCGCAGTGTCT
TCAGCTTGGGACAATCGGCTACTTCCTCCGCCAGCGAGGATATTTGGTTC
TGGTTAAGGTTCAGTTCGGTCACAAACAGTCCGCCCACATCGGCGGGCAC
ATCGGTGATCTTGTTCCTGGACAGGTCCAGGACATCCAGCTGCTTCAGAC
CGCACAGCATGGAGGGGAACTCCTTCAGCTGATTGTTGCTCAGATTCACG
GTCTTCAGGTGCGTGCAATTGGCCAGGGTTTTGGGCAGCCTTGTCAGCAT
ATTGTCCATCAGCAACAGCACCTCCAGCTTGGCCAGTTCGCCCACCACCT
CGTTGAGTTCCACCAGTCGATTTCCGCTTAGATTGAGGTGCTTGAGTAGC
GTCAGCTTGCCCAGTTCGTCGGGCACACGTTCGAAGCGATTCTCGGAGAG
ATCCAGGGTTTTCAGGACATTCGGGTAGGCCCTTAGCTGCAGTGGGAATT
CTTGCAGCCGCTGCAAGGATATCTTCAGGATTCCCGTCTTCTGGGCCGTC
TCCAGTTGTTGTTTTATCTGTTTATTGCCCATGTCGACTGATAACT
BO04031.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3040-PA | 717 | CG3040-RA | 1..714 | 732..19 | 3570 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:26:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3040-RA | 1070 | CG3040-RA | 219..932 | 732..19 | 3570 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:26:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6972462..6973175 | 19..732 | 3570 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:26:56 has no hits.
BO04031.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:52:55 Download gff for
BO04031.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3040-PA | 1..717 | 18..732 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:09 Download gff for
BO04031.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3040-PA | 1..717 | 18..732 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:31:53 Download gff for
BO04031.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3040-RA | 236..949 | 19..732 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:26:01 Download gff for
BO04031.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3040-RA | 219..932 | 19..732 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:01 Download gff for
BO04031.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6972462..6973175 | 19..732 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:31:53 Download gff for
BO04031.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6866495..6867208 | 19..732 | 100 | | Plus |
BO04031.5prime Sequence
746 bp (718 high quality bases) assembled on 2005-12-01
> BO04031.5prime
GAAGTTATCAGTCGACATGGGCAATAAACAGATAAAACAACAACTGGAGA
CGGCCCAGAAGACGGGAATCCTGAAGATATCCTTGCAGCGGCTGCAAGAA
TTCCCACTGCAGCTAAGGGCCTACCCGAATGTCCTGAAAACCCTGGATCT
CTCCGAGAATCGCTTCGAACGTGTGCCCGACGAACTGGGCAAGCTGACGC
TACTCAAGCACCTCAATCTAAGCGGAAATCGACTGGTGGAACTCAACGAG
GTGGTGGGCGAACTGGCCAAGCTGGAGGTGCTGTTGCTGATGGACAATAT
GCTGACAAGGCTGCCCAAAACCCTGGCCAATTGCACGCACCTGAAGACCG
TGAATCTGAGCAACAATCAGCTGAAGGAGTTCCCCTCCATGCTGTGCGGT
CTGAAGCAGCTGGATGTCCTGGACCTGTCCAGGAACAAGATCACCGATGT
GCCCGCCGATGTGGGCGGACTGTTTGTGACCGAACTGAACCTTAACCAGA
ACCAAATATCCTCGCTGGCGGAGGAAGTAGCCGATTGTCCCAAGCTGAAG
ACACTGCGGCTCGAGGAGAACTGCCTTCAGGCAGCGGCCTTTACACCCAA
GATCCTCAAGGACTCGAAAATCTGCAACCTGGCCGTCGACGGCAATCTGT
TCAACTCGAAACAGTTCACCGATCTCGATGGCTACGATGTCTACATGGAG
CGGTATACGGCGGTCAGGAAGAAGATGTTCGCAAGCTTTCTAGACC
BO04031.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 11:57:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3040-PA | 717 | CG3040-RA | 1..714 | 17..730 | 3570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:13:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3040-RA | 1070 | CG3040-RA | 219..932 | 17..730 | 3570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:13:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6972462..6973175 | 730..17 | 3570 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:13:10 has no hits.
BO04031.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 01:52:55 Download gff for
BO04031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3040-PA | 1..717 | 17..731 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:10 Download gff for
BO04031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3040-PA | 1..717 | 17..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:25:02 Download gff for
BO04031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3040-RA | 236..949 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:51:19 Download gff for
BO04031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3040-RA | 219..932 | 17..730 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:51:19 Download gff for
BO04031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6972462..6973175 | 17..730 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:25:02 Download gff for
BO04031.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6866495..6867208 | 17..730 | 100 | | Minus |
BO04031.complete Sequence
748 bp (748 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ629606
> BO04031.complete
GAAGTTATCAGTCGACATGGGCAATAAACAGATAAAACAACAACTGGAGA
CGGCCCAGAAGACGGGAATCCTGAAGATATCCTTGCAGCGGCTGCAAGAA
TTCCCACTGCAGCTAAGGGCCTACCCGAATGTCCTGAAAACCCTGGATCT
CTCCGAGAATCGCTTCGAACGTGTGCCCGACGAACTGGGCAAGCTGACGC
TACTCAAGCACCTCAATCTAAGCGGAAATCGACTGGTGGAACTCAACGAG
GTGGTGGGCGAACTGGCCAAGCTGGAGGTGCTGTTGCTGATGGACAATAT
GCTGACAAGGCTGCCCAAAACCCTGGCCAATTGCACGCACCTGAAGACCG
TGAATCTGAGCAACAATCAGCTGAAGGAGTTCCCCTCCATGCTGTGCGGT
CTGAAGCAGCTGGATGTCCTGGACCTGTCCAGGAACAAGATCACCGATGT
GCCCGCCGATGTGGGCGGACTGTTTGTGACCGAACTGAACCTTAACCAGA
ACCAAATATCCTCGCTGGCGGAGGAAGTAGCCGATTGTCCCAAGCTGAAG
ACACTGCGGCTCGAGGAGAACTGCCTTCAGGCAGCGGCCTTTACACCCAA
GATCCTCAAGGACTCGAAAATCTGCAACCTGGCCGTCGACGGCAATCTGT
TCAACTCGAAACAGTTCACCGATCTCGATGGCTACGATGTCTACATGGAG
CGGTATACGGCGGTCAGGAAGAAGATGTTCGCAAGCTTTCTAGACCAT
BO04031.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:34:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3040-RA | 717 | CG3040-PA | 1..714 | 17..730 | 3570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:34:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3040-RA | 1070 | CG3040-RA | 219..932 | 17..730 | 3570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:34:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6972462..6973175 | 730..17 | 3570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:34:19 has no hits.
BO04031.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:33:39 Download gff for
BO04031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3040-RA | 1..717 | 17..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:01:04 Download gff for
BO04031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3040-RA | 236..949 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:48 Download gff for
BO04031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3040-RA | 236..949 | 17..732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:33:39 Download gff for
BO04031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3040-RA | 236..949 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:17 Download gff for
BO04031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3040-RA | 219..932 | 17..732 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:17 Download gff for
BO04031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6972460..6973175 | 17..732 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:48 Download gff for
BO04031.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6866493..6867208 | 17..732 | 99 | | Minus |
BO04031.pep Sequence
Translation from 16 to 748
> BO04031.pep
MGNKQIKQQLETAQKTGILKISLQRLQEFPLQLRAYPNVLKTLDLSENRF
ERVPDELGKLTLLKHLNLSGNRLVELNEVVGELAKLEVLLLMDNMLTRLP
KTLANCTHLKTVNLSNNQLKEFPSMLCGLKQLDVLDLSRNKITDVPADVG
GLFVTELNLNQNQISSLAEEVADCPKLKTLRLEENCLQAAAFTPKILKDS
KICNLAVDGNLFNSKQFTDLDGYDVYMERYTAVRKKMFASFLDH
BO04031.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:35:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3040-PA | 238 | CG3040-PA | 1..238 | 1..238 | 1201 | 100 | Plus |
| scrib-PC | 1247 | CG43398-PC | 154..323 | 40..210 | 228 | 34.9 | Plus |
| scrib-PI | 1711 | CG43398-PI | 154..323 | 40..210 | 228 | 34.9 | Plus |
| scrib-PP | 1729 | CG43398-PP | 154..323 | 40..210 | 228 | 34.9 | Plus |
| scrib-PB | 1756 | CG43398-PB | 154..323 | 40..210 | 228 | 34.9 | Plus |
| scrib-PC | 1247 | CG43398-PC | 209..371 | 25..187 | 211 | 32.9 | Plus |
| scrib-PI | 1711 | CG43398-PI | 209..371 | 25..187 | 211 | 32.9 | Plus |
| scrib-PP | 1729 | CG43398-PP | 209..371 | 25..187 | 211 | 32.9 | Plus |
| scrib-PC | 1247 | CG43398-PC | 98..280 | 6..188 | 209 | 31.5 | Plus |
| scrib-PI | 1711 | CG43398-PI | 98..280 | 6..188 | 209 | 31.5 | Plus |
| scrib-PP | 1729 | CG43398-PP | 98..280 | 6..188 | 209 | 31.5 | Plus |
| scrib-PC | 1247 | CG43398-PC | 58..234 | 9..188 | 194 | 32.6 | Plus |
| scrib-PI | 1711 | CG43398-PI | 58..234 | 9..188 | 194 | 32.6 | Plus |
| scrib-PP | 1729 | CG43398-PP | 58..234 | 9..188 | 194 | 32.6 | Plus |
| scrib-PC | 1247 | CG43398-PC | 25..185 | 26..185 | 171 | 29.8 | Plus |
| scrib-PI | 1711 | CG43398-PI | 25..185 | 26..185 | 171 | 29.8 | Plus |
| scrib-PP | 1729 | CG43398-PP | 25..185 | 26..185 | 171 | 29.8 | Plus |
| scrib-PC | 1247 | CG43398-PC | 211..396 | 4..167 | 168 | 29 | Plus |
| scrib-PI | 1711 | CG43398-PI | 211..396 | 4..167 | 168 | 29 | Plus |
| scrib-PP | 1729 | CG43398-PP | 211..396 | 4..167 | 168 | 29 | Plus |
